Wall clock time and date at job start Tue Mar 31 2020 21:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35729 * 117.00081 * 2 1 4 4 C 1.38980 * 119.91254 * 0.02593 * 3 2 1 5 5 C 1.37712 * 120.09684 * 179.73858 * 4 3 2 6 6 C 1.39731 * 119.93388 * 0.53312 * 5 4 3 7 7 C 1.47615 * 120.08368 * 179.71776 * 6 5 4 8 8 O 1.21580 * 120.00062 * 179.72650 * 7 6 5 9 9 N 1.34776 * 119.99526 * 359.73141 * 7 6 5 10 10 C 1.46505 * 119.99638 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47097 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.63669 * 51.85851 * 11 10 9 13 13 C 1.55156 * 110.71830 * 174.99627 * 11 10 9 14 14 C 1.54906 * 101.61451 * 154.02508 * 13 11 10 15 15 N 1.47471 * 104.81210 * 323.04512 * 14 13 11 16 16 C 1.36937 * 125.62509 * 204.14198 * 15 14 13 17 17 H 1.08004 * 119.99479 * 179.91598 * 16 15 14 18 18 C 1.38806 * 120.00537 * 359.91425 * 16 15 14 19 19 N 1.31628 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47376 * 90.00011 * 20 18 16 22 22 H 1.48499 * 109.46835 * 210.00000 * 20 18 16 23 23 H 1.48494 * 109.47029 * 329.99798 * 20 18 16 24 24 C 1.47017 * 108.71970 * 24.07007 * 15 14 13 25 25 C 1.39712 * 119.83400 * 359.44513 * 6 5 4 26 26 C 1.37814 * 119.89948 * 0.27751 * 25 6 5 27 27 Cl 1.73598 * 119.97182 * 180.02562 * 26 25 6 28 28 H 1.08998 * 109.47070 * 59.99857 * 1 2 3 29 29 H 1.09007 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47068 * 299.99685 * 1 2 3 31 31 H 1.07996 * 119.95274 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.02982 * 180.25681 * 5 4 3 33 33 H 0.97001 * 120.00552 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.47066 * 59.99373 * 10 9 7 35 35 H 1.09000 * 109.47236 * 299.99784 * 10 9 7 36 36 H 1.09002 * 111.00677 * 272.12092 * 13 11 10 37 37 H 1.09002 * 111.00564 * 35.93350 * 13 11 10 38 38 H 1.09008 * 110.36753 * 81.85112 * 14 13 11 39 39 H 1.09001 * 110.37094 * 204.16995 * 14 13 11 40 40 H 0.96994 * 120.00079 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.88206 * 239.55467 * 24 15 14 42 42 H 1.09007 * 109.88177 * 118.39340 * 24 15 14 43 43 H 1.08003 * 120.05288 * 180.25486 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2866 2.3738 0.0005 5 6 1.9078 3.6028 0.0060 6 6 3.3031 3.6788 -0.0003 7 6 3.9724 4.9945 -0.0008 8 8 5.1865 5.0589 -0.0013 9 7 3.2376 6.1243 -0.0006 10 6 3.9018 7.4301 -0.0017 11 6 2.8474 8.5387 -0.0019 12 1 2.1265 8.3834 0.8008 13 6 3.5167 9.9329 0.1235 14 6 2.4653 10.8458 -0.5552 15 7 1.9350 10.0435 -1.6732 16 6 1.3543 10.5429 -2.8083 17 1 0.9970 9.8694 -3.5733 18 6 1.2248 11.9147 -2.9759 19 7 1.6598 12.7356 -2.0434 20 14 0.4320 12.5960 -4.5241 21 1 -1.0312 12.7343 -4.3112 22 1 1.0150 13.9259 -4.8346 23 1 0.6819 11.6692 -5.6571 24 6 2.1345 8.6192 -1.3681 25 6 4.0630 2.5065 -0.0004 26 6 3.4342 1.2802 0.0000 27 17 4.3767 -0.1777 0.0006 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2082 2.3147 0.0005 32 1 1.3172 4.5070 0.0106 33 1 2.2689 6.0730 -0.0006 34 1 4.5240 7.5206 -0.8922 35 1 4.5253 7.5213 0.8877 36 1 3.6553 10.2071 1.1694 37 1 4.4643 9.9612 -0.4145 38 1 1.6679 11.0926 0.1459 39 1 2.9369 11.7544 -0.9297 40 1 1.5696 13.6942 -2.1606 41 1 2.7543 8.1586 -2.1374 42 1 1.1705 8.1132 -1.3137 43 1 5.1417 2.5611 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028973035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:16 Heat of formation + Delta-G solvation = -27.517323 kcal Electronic energy + Delta-G solvation = -25956.860586 eV Core-core repulsion = 22029.059540 eV Total energy + Delta-G solvation = -3927.801045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87125 -39.70996 -37.91670 -37.39544 -36.62969 -34.77519 -32.64331 -31.39956 -30.98031 -29.73284 -28.41588 -27.73456 -25.62138 -24.14875 -23.37883 -22.69256 -20.82907 -20.04027 -19.77162 -18.88242 -17.76299 -17.04758 -16.82508 -16.35440 -15.87628 -15.61368 -15.38600 -14.86052 -14.59253 -14.52030 -14.40410 -13.91778 -13.65118 -13.59099 -13.20025 -12.85113 -12.53758 -12.45737 -11.95895 -11.82504 -11.76578 -11.61682 -11.54151 -11.46926 -11.21629 -10.97777 -10.83229 -10.47402 -10.18838 -10.07226 -9.99707 -9.80270 -9.54014 -9.39984 -9.07462 -8.67686 -8.64717 -6.86373 -5.68133 -3.09921 0.43521 0.70172 1.78365 2.55452 2.63944 3.12590 3.37859 3.42996 3.45090 3.45609 4.20891 4.31089 4.45299 4.49968 4.61464 4.66574 4.71350 4.91469 5.01704 5.07501 5.21725 5.26455 5.36466 5.43991 5.50378 5.62700 5.68207 5.78477 5.85151 6.03005 6.04055 6.08535 6.31757 6.37656 6.51382 6.55953 6.67721 6.69007 6.87119 7.45462 7.48522 7.59940 7.83167 8.14379 8.33763 9.19396 9.80378 10.44951 11.35883 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002124 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.611276 B =13180.192839 C =14092.864376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.161 3.839 4 C -0.205 4.205 5 C -0.038 4.038 6 C -0.158 4.158 7 C 0.560 3.440 8 O -0.539 6.539 9 N -0.719 5.719 10 C 0.132 3.868 11 C -0.115 4.115 12 H 0.076 0.924 13 C -0.135 4.135 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.141 3.859 25 C -0.013 4.013 26 C -0.080 4.080 27 Cl -0.051 7.051 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.107 0.893 40 H 0.252 0.748 41 H 0.025 0.975 42 H 0.017 0.983 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -24.371 7.728 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.113 3.887 4 C -0.224 4.224 5 C -0.057 4.057 6 C -0.162 4.162 7 C 0.347 3.653 8 O -0.417 6.417 9 N -0.370 5.370 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.094 0.906 13 C -0.174 4.174 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.015 3.985 25 C -0.032 4.032 26 C -0.107 4.107 27 Cl -0.022 7.022 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.235 0.765 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.341 -24.418 7.618 25.581 hybrid contribution -1.267 0.324 -0.763 1.514 sum -1.608 -24.094 6.855 25.102 Atomic orbital electron populations 1.23207 0.77473 1.04629 1.01897 1.86137 1.22040 1.25792 1.87433 1.18934 0.90509 0.85318 0.93930 1.21160 1.00669 0.91231 1.09333 1.21255 0.93357 0.97928 0.93176 1.19823 0.93439 0.93580 1.09334 1.17976 0.86900 0.83718 0.76724 1.90790 1.13391 1.87445 1.50103 1.45990 1.10365 1.06039 1.74623 1.21515 0.95195 0.79970 1.02404 1.22452 0.96973 0.94950 0.99064 0.90577 1.23009 1.00107 0.94173 1.00153 1.21947 0.92361 0.95215 0.87794 1.44515 1.70246 0.99168 1.19148 1.19070 1.30974 0.90566 0.94550 0.90550 1.24793 1.01550 0.95862 0.98490 1.69796 1.51858 1.02183 1.33247 0.86071 0.78777 0.78369 0.82276 1.21647 1.21611 1.20694 1.21332 0.96099 0.88276 0.92766 1.21009 1.01471 0.88357 0.92392 1.20019 0.88742 0.89085 1.12860 1.98377 1.71661 1.35030 1.97140 0.92030 0.87695 0.92085 0.83762 0.84372 0.76506 0.90951 0.91348 0.92078 0.91769 0.96986 0.87516 0.93701 0.95746 0.96495 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.53 9.94 -18.89 -0.19 -2.71 16 3 C 0.16 1.47 6.69 -39.00 -0.26 1.21 16 4 C -0.21 -1.56 9.01 -39.50 -0.36 -1.91 16 5 C -0.04 -0.32 9.53 -39.22 -0.37 -0.70 16 6 C -0.16 -1.74 5.87 -104.96 -0.62 -2.35 16 7 C 0.56 7.56 7.76 -12.43 -0.10 7.46 16 8 O -0.54 -9.15 16.34 5.29 0.09 -9.06 16 9 N -0.72 -8.86 5.42 -61.32 -0.33 -9.19 16 10 C 0.13 1.88 5.02 -4.04 -0.02 1.86 16 11 C -0.12 -1.83 2.95 -88.79 -0.26 -2.09 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.14 -2.43 6.53 -24.58 -0.16 -2.60 16 14 C 0.15 3.58 5.89 -2.50 -0.01 3.57 16 15 N -0.60 -15.15 3.40 -170.04 -0.58 -15.73 16 16 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 17 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 20 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.14 2.78 6.76 -3.07 -0.02 2.76 16 25 C -0.01 -0.14 9.36 -39.19 -0.37 -0.51 16 26 C -0.08 -0.82 6.32 -39.43 -0.25 -1.07 16 27 Cl -0.05 -0.51 28.49 -51.86 -1.48 -1.99 16 28 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 31 H 0.14 0.70 6.28 -52.49 -0.33 0.37 16 32 H 0.14 0.87 6.39 -52.49 -0.34 0.54 16 33 H 0.40 3.99 6.49 -40.82 -0.26 3.72 16 34 H 0.07 1.15 7.94 -51.93 -0.41 0.73 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 38 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.11 2.86 5.88 -51.93 -0.31 2.56 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.49 7.69 -51.93 -0.40 0.10 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.15 1.71 7.64 -52.48 -0.40 1.31 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -32.96 368.49 -9.20 -42.16 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.74 Total: 0.19 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.06 Total: 0.00 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.35 Total: -50.97 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.10 Total: -11.77 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -1.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.96 -9.20 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028973035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.643 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds