Wall clock time and date at job start Tue Mar 31 2020 21:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35704 * 117.00071 * 2 1 4 4 C 1.38817 * 120.14983 * 275.08411 * 3 2 1 5 5 F 1.35103 * 119.93796 * 0.02562 * 4 3 2 6 6 C 1.38272 * 120.11952 * 180.02562 * 4 3 2 7 7 C 1.38445 * 120.40761 * 0.02562 * 6 4 3 8 8 C 1.38094 * 120.28757 * 359.68718 * 7 6 4 9 9 F 1.35100 * 120.05773 * 180.30346 * 8 7 6 10 10 C 1.39987 * 119.87713 * 0.58667 * 8 7 6 11 11 C 1.47396 * 120.19840 * 179.71764 * 10 8 7 12 12 O 1.21606 * 119.99536 * 94.53880 * 11 10 8 13 13 N 1.34770 * 120.00160 * 274.53694 * 11 10 8 14 14 C 1.49763 * 127.90245 * 354.10205 * 13 11 10 15 15 C 1.56017 * 105.31987 * 182.15494 * 14 13 11 16 16 H 1.09003 * 116.24856 * 159.16820 * 15 14 13 17 17 C 1.57080 * 99.60577 * 33.13769 * 15 14 13 18 18 C 1.49291 * 126.94597 * 174.90624 * 13 11 10 19 19 H 1.09000 * 116.15019 * 15.81720 * 18 13 11 20 20 C 1.56018 * 104.09114 * 246.67592 * 18 13 11 21 21 N 1.47874 * 105.10383 * 287.91642 * 20 18 13 22 22 C 1.36934 * 126.94419 * 182.00203 * 21 20 18 23 23 H 1.08004 * 119.99620 * 180.02562 * 22 21 20 24 24 C 1.38809 * 119.99886 * 0.02844 * 22 21 20 25 25 N 1.31614 * 120.00209 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99753 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47109 * 89.99738 * 26 24 22 28 28 H 1.48496 * 109.47184 * 209.99747 * 26 24 22 29 29 H 1.48504 * 109.47086 * 329.99753 * 26 24 22 30 30 H 1.09002 * 109.46663 * 55.02841 * 1 2 3 31 31 H 1.08999 * 109.46919 * 175.02770 * 1 2 3 32 32 H 1.08994 * 109.47204 * 295.03086 * 1 2 3 33 33 H 1.08001 * 119.79515 * 179.97438 * 6 4 3 34 34 H 1.08000 * 119.85640 * 179.97438 * 7 6 4 35 35 H 1.09010 * 109.93467 * 63.32292 * 14 13 11 36 36 H 1.09001 * 110.48963 * 301.27873 * 14 13 11 37 37 H 1.09004 * 112.36883 * 191.71640 * 17 15 14 38 38 H 1.08998 * 112.44840 * 64.29816 * 17 15 14 39 39 H 1.08995 * 110.31505 * 46.82725 * 20 18 13 40 40 H 1.08999 * 110.31538 * 169.01261 * 20 18 13 41 41 H 0.97005 * 119.99783 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.2669 1.8786 -1.1957 5 9 1.8681 1.3257 -2.3621 6 6 2.8952 3.1104 -1.1950 7 6 3.3083 3.6856 -0.0054 8 6 3.0909 3.0371 1.1943 9 9 3.4905 3.6055 2.3529 10 6 2.4611 1.7870 1.2070 11 6 2.2311 1.0857 2.4829 12 8 1.1667 1.2047 3.0588 13 7 3.2004 0.3126 3.0112 14 6 4.5186 -0.0546 2.4024 15 6 5.1980 -1.0075 3.4341 16 1 5.9848 -1.6550 3.0470 17 6 3.9230 -1.7213 4.0108 18 6 3.1761 -0.3779 4.3346 19 1 2.2004 -0.4666 4.8123 20 6 4.2854 0.3445 5.1603 21 7 5.5628 -0.1116 4.5712 22 6 6.8251 0.2208 4.9850 23 1 7.6854 -0.1795 4.4691 24 6 6.9989 1.0721 6.0675 25 7 5.9505 1.5602 6.6959 26 14 8.7210 1.5261 6.6315 27 1 9.1703 2.7475 5.9162 28 1 8.7109 1.7845 8.0938 29 1 9.6507 0.4073 6.3329 30 1 -0.3633 0.5891 -0.8421 31 1 -0.3633 -1.0238 -0.0891 32 1 -0.3633 0.4348 0.9311 33 1 3.0654 3.6265 -2.1283 34 1 3.7985 4.6479 -0.0152 35 1 5.1237 0.8406 2.2585 36 1 4.3703 -0.5688 1.4528 37 1 4.1420 -2.3007 4.9078 38 1 3.4024 -2.3147 3.2592 39 1 4.1875 1.4255 5.0612 40 1 4.2269 0.0529 6.2090 41 1 6.0721 2.1555 7.4522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032556810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:38 Heat of formation + Delta-G solvation = -61.103730 kcal Electronic energy + Delta-G solvation = -30637.047596 eV Core-core repulsion = 26155.993455 eV Total energy + Delta-G solvation = -4481.054141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.17409 -48.98940 -40.48184 -39.48401 -37.72922 -37.34799 -33.60053 -31.95265 -30.89190 -30.08044 -28.96169 -28.55485 -27.20026 -25.26284 -24.66827 -23.20356 -22.77531 -20.91669 -19.88708 -18.97624 -18.40886 -17.90971 -17.81888 -16.93556 -16.57254 -16.25007 -16.08066 -15.74084 -15.43166 -15.21127 -14.88286 -14.75330 -14.62927 -14.34387 -13.96080 -13.46822 -13.40522 -13.05776 -12.76216 -12.45138 -12.24136 -12.01335 -11.89742 -11.69451 -11.60749 -11.31013 -11.04574 -10.86197 -10.79332 -10.61891 -10.39714 -10.27654 -10.08354 -9.76923 -9.63729 -9.28572 -8.78703 -8.71765 -8.08803 -6.93591 -5.76683 -3.11331 0.46623 0.57746 2.72971 2.75295 3.13730 3.37426 3.38347 3.42171 3.44774 3.88104 3.99723 4.29588 4.41822 4.55525 4.66527 4.88940 5.05111 5.08620 5.17709 5.21129 5.34212 5.44826 5.50626 5.55762 5.56084 5.60783 5.63391 5.70015 5.76138 5.94299 6.13726 6.22934 6.27306 6.37858 6.44403 6.58074 6.64216 7.05156 7.40945 7.47021 7.71347 7.93745 8.09545 8.36701 9.09921 9.70981 10.39769 11.35528 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.004006 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.863745 B = 6987.924900 C = 7693.408286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.322 6.322 3 C 0.125 3.875 4 C 0.064 3.936 5 F -0.127 7.127 6 C -0.101 4.101 7 C -0.133 4.133 8 C 0.143 3.857 9 F -0.112 7.112 10 C -0.140 4.140 11 C 0.587 3.413 12 O -0.543 6.543 13 N -0.592 5.592 14 C 0.085 3.915 15 C 0.143 3.857 16 H 0.109 0.891 17 C -0.150 4.150 18 C 0.097 3.903 19 H 0.114 0.886 20 C 0.175 3.825 21 N -0.596 5.596 22 C -0.232 4.232 23 H 0.081 0.919 24 C -0.004 4.004 25 N -0.919 5.919 26 Si 0.912 3.088 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -0.444 -16.361 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.238 6.238 3 C 0.079 3.921 4 C 0.044 3.956 5 F -0.105 7.105 6 C -0.120 4.120 7 C -0.152 4.152 8 C 0.122 3.878 9 F -0.090 7.090 10 C -0.144 4.144 11 C 0.373 3.627 12 O -0.422 6.422 13 N -0.324 5.324 14 C -0.040 4.040 15 C 0.034 3.966 16 H 0.127 0.873 17 C -0.190 4.190 18 C -0.005 4.005 19 H 0.132 0.868 20 C 0.050 3.950 21 N -0.320 5.320 22 C -0.360 4.360 23 H 0.099 0.901 24 C -0.201 4.201 25 N -0.565 5.565 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.519 -0.347 -15.855 18.002 hybrid contribution 0.779 0.646 0.234 1.039 sum -7.739 0.299 -15.622 17.436 Atomic orbital electron populations 1.23164 0.77247 1.03914 1.01651 1.85997 1.21052 1.22791 1.93954 1.18237 0.97733 0.86821 0.89311 1.17843 1.03024 0.93621 0.81123 1.91519 1.88762 1.85164 1.45084 1.20976 0.97847 0.93499 0.99640 1.20992 1.02450 1.02018 0.89692 1.17503 0.96548 0.90947 0.82755 1.91656 1.87640 1.83564 1.46172 1.20266 1.04037 0.95194 0.94932 1.17019 0.83369 0.79078 0.83244 1.90782 1.24771 1.64375 1.62252 1.49525 1.16853 1.46270 1.19752 1.23722 0.83156 1.00388 0.96732 1.23147 0.93854 0.90937 0.88701 0.87317 1.24157 0.97767 0.95659 1.01380 1.24400 0.99927 0.92500 0.83685 0.86833 1.21945 0.81518 0.96874 0.94709 1.45232 1.02226 1.52518 1.32051 1.19040 0.82217 1.23869 1.10886 0.90134 1.24809 0.97380 0.99653 0.98284 1.69911 1.27344 1.35960 1.23290 0.86125 0.83484 0.78317 0.77825 1.21620 1.21679 1.20629 0.93249 0.88141 0.92049 0.82815 0.82643 0.91059 0.92334 0.89542 0.91467 0.93324 0.92392 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.13 101.05 1.12 1.51 16 2 O -0.32 -4.68 9.73 -18.82 -0.18 -4.86 16 3 C 0.13 1.80 5.74 -38.65 -0.22 1.58 16 4 C 0.06 0.76 7.30 -39.35 -0.29 0.48 16 5 F -0.13 -1.49 17.11 2.25 0.04 -1.46 16 6 C -0.10 -0.96 10.00 -39.49 -0.40 -1.35 16 7 C -0.13 -1.43 10.00 -39.56 -0.40 -1.82 16 8 C 0.14 2.16 7.28 -38.98 -0.28 1.88 16 9 F -0.11 -2.03 16.83 2.25 0.04 -1.99 16 10 C -0.14 -2.30 5.01 -104.80 -0.52 -2.82 16 11 C 0.59 11.52 6.51 -12.54 -0.08 11.44 16 12 O -0.54 -11.91 17.45 5.27 0.09 -11.81 16 13 N -0.59 -11.54 3.01 -156.49 -0.47 -12.01 16 14 C 0.08 1.53 6.15 -0.61 0.00 1.53 16 15 C 0.14 2.68 5.53 -62.55 -0.35 2.33 16 16 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 17 C -0.15 -2.57 6.82 -22.30 -0.15 -2.72 16 18 C 0.10 1.92 5.20 -62.55 -0.33 1.59 16 19 H 0.11 2.17 8.03 -51.93 -0.42 1.76 16 20 C 0.17 4.21 4.76 -1.67 -0.01 4.21 16 21 N -0.60 -14.34 3.02 -156.34 -0.47 -14.81 16 22 C -0.23 -6.16 10.37 -15.06 -0.16 -6.31 16 23 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 24 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 25 N -0.92 -26.73 10.56 55.49 0.59 -26.15 16 26 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.36 7.67 -51.93 -0.40 0.96 16 40 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -32.66 356.42 -7.15 -39.81 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.98 Total: -0.02 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -2.15 Total: 11.29 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.36 Total: -52.97 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.09 Total: -16.67 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.66 -7.15 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032556810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.293 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds