Wall clock time and date at job start Tue Mar 31 2020 21:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35704 * 117.00071 * 2 1 4 4 C 1.38817 * 120.14983 * 275.08411 * 3 2 1 5 5 F 1.35103 * 119.93796 * 0.02562 * 4 3 2 6 6 C 1.38272 * 120.11952 * 180.02562 * 4 3 2 7 7 C 1.38445 * 120.40761 * 0.02562 * 6 4 3 8 8 C 1.38094 * 120.28757 * 359.68718 * 7 6 4 9 9 F 1.35100 * 120.05773 * 180.30346 * 8 7 6 10 10 C 1.39987 * 119.87713 * 0.58667 * 8 7 6 11 11 C 1.47396 * 120.19840 * 179.71764 * 10 8 7 12 12 O 1.21606 * 119.99536 * 94.53880 * 11 10 8 13 13 N 1.34770 * 120.00160 * 274.53694 * 11 10 8 14 14 C 1.49763 * 127.90245 * 354.10205 * 13 11 10 15 15 C 1.56017 * 105.31987 * 182.15494 * 14 13 11 16 16 H 1.09003 * 116.24856 * 159.16820 * 15 14 13 17 17 C 1.57080 * 99.60577 * 33.13769 * 15 14 13 18 18 C 1.49291 * 126.94597 * 174.90624 * 13 11 10 19 19 H 1.09000 * 116.15019 * 15.81720 * 18 13 11 20 20 C 1.56018 * 104.09114 * 246.67592 * 18 13 11 21 21 N 1.47874 * 105.10383 * 287.91642 * 20 18 13 22 22 C 1.36934 * 126.94419 * 182.00203 * 21 20 18 23 23 H 1.08004 * 119.99620 * 180.02562 * 22 21 20 24 24 C 1.38809 * 119.99886 * 0.02844 * 22 21 20 25 25 N 1.31614 * 120.00209 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99753 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47109 * 89.99738 * 26 24 22 28 28 H 1.48496 * 109.47184 * 209.99747 * 26 24 22 29 29 H 1.48504 * 109.47086 * 329.99753 * 26 24 22 30 30 H 1.09002 * 109.46663 * 55.02841 * 1 2 3 31 31 H 1.08999 * 109.46919 * 175.02770 * 1 2 3 32 32 H 1.08994 * 109.47204 * 295.03086 * 1 2 3 33 33 H 1.08001 * 119.79515 * 179.97438 * 6 4 3 34 34 H 1.08000 * 119.85640 * 179.97438 * 7 6 4 35 35 H 1.09010 * 109.93467 * 63.32292 * 14 13 11 36 36 H 1.09001 * 110.48963 * 301.27873 * 14 13 11 37 37 H 1.09004 * 112.36883 * 191.71640 * 17 15 14 38 38 H 1.08998 * 112.44840 * 64.29816 * 17 15 14 39 39 H 1.08995 * 110.31505 * 46.82725 * 20 18 13 40 40 H 1.08999 * 110.31538 * 169.01261 * 20 18 13 41 41 H 0.97005 * 119.99783 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 2.2669 1.8786 -1.1957 5 9 1.8681 1.3257 -2.3621 6 6 2.8952 3.1104 -1.1950 7 6 3.3083 3.6856 -0.0054 8 6 3.0909 3.0371 1.1943 9 9 3.4905 3.6055 2.3529 10 6 2.4611 1.7870 1.2070 11 6 2.2311 1.0857 2.4829 12 8 1.1667 1.2047 3.0588 13 7 3.2004 0.3126 3.0112 14 6 4.5186 -0.0546 2.4024 15 6 5.1980 -1.0075 3.4341 16 1 5.9848 -1.6550 3.0470 17 6 3.9230 -1.7213 4.0108 18 6 3.1761 -0.3779 4.3346 19 1 2.2004 -0.4666 4.8123 20 6 4.2854 0.3445 5.1603 21 7 5.5628 -0.1116 4.5712 22 6 6.8251 0.2208 4.9850 23 1 7.6854 -0.1795 4.4691 24 6 6.9989 1.0721 6.0675 25 7 5.9505 1.5602 6.6959 26 14 8.7210 1.5261 6.6315 27 1 9.1703 2.7475 5.9162 28 1 8.7109 1.7845 8.0938 29 1 9.6507 0.4073 6.3329 30 1 -0.3633 0.5891 -0.8421 31 1 -0.3633 -1.0238 -0.0891 32 1 -0.3633 0.4348 0.9311 33 1 3.0654 3.6265 -2.1283 34 1 3.7985 4.6479 -0.0152 35 1 5.1237 0.8406 2.2585 36 1 4.3703 -0.5688 1.4528 37 1 4.1420 -2.3007 4.9078 38 1 3.4024 -2.3147 3.2592 39 1 4.1875 1.4255 5.0612 40 1 4.2269 0.0529 6.2090 41 1 6.0721 2.1555 7.4522 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032556810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:37 Heat of formation + Delta-G solvation = -81.709582 kcal Electronic energy + Delta-G solvation = -30637.941133 eV Core-core repulsion = 26155.993455 eV Total energy + Delta-G solvation = -4481.947678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.24495 -50.09353 -41.84396 -40.79961 -39.20000 -38.39264 -35.46230 -33.54727 -32.23324 -31.08389 -30.60107 -30.29643 -28.12686 -27.02038 -26.05143 -24.75482 -23.78773 -22.42572 -21.48285 -20.47582 -19.63010 -19.22534 -18.94588 -18.39513 -17.97362 -17.49357 -17.29231 -17.19251 -16.66571 -16.48097 -16.15467 -16.05170 -15.80965 -15.68789 -15.50137 -15.09004 -14.76324 -14.22243 -13.93029 -13.83794 -13.59543 -13.47748 -13.34774 -13.13666 -13.02308 -12.85863 -12.70961 -12.58814 -12.37929 -12.20435 -12.06655 -11.93216 -11.55713 -11.46695 -11.19555 -10.75693 -10.31822 -9.80140 -9.70654 -8.93803 -7.84609 -5.20882 -0.52923 -0.41508 1.26156 1.47151 1.48724 1.57451 1.67261 1.90852 2.33061 2.48358 2.83536 2.96936 3.17282 3.32826 3.38792 3.56168 3.71408 3.73737 3.82868 3.93646 3.99618 4.15475 4.24401 4.32802 4.45326 4.49837 4.57013 4.58849 4.65261 4.71165 4.74393 4.82387 4.84451 4.96182 5.07872 5.17578 5.32712 5.42050 5.46754 5.63344 6.06398 6.08162 6.41505 6.84130 7.01823 7.69818 8.40154 9.26886 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.004006 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.863745 B = 6987.924900 C = 7693.408286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.339 6.339 3 C 0.117 3.883 4 C 0.070 3.930 5 F -0.122 7.122 6 C -0.071 4.071 7 C -0.113 4.113 8 C 0.112 3.888 9 F -0.142 7.142 10 C -0.167 4.167 11 C 0.582 3.418 12 O -0.579 6.579 13 N -0.598 5.598 14 C 0.095 3.905 15 C 0.139 3.861 16 H 0.141 0.859 17 C -0.126 4.126 18 C 0.098 3.902 19 H 0.115 0.885 20 C 0.190 3.810 21 N -0.614 5.614 22 C -0.231 4.231 23 H 0.097 0.903 24 C -0.069 4.069 25 N -0.957 5.957 26 Si 0.977 3.023 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.261 1.261 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.038 0.962 33 H 0.203 0.797 34 H 0.190 0.810 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.101 0.899 39 H -0.005 1.005 40 H 0.023 0.977 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -1.253 -20.258 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.255 6.255 3 C 0.071 3.929 4 C 0.050 3.950 5 F -0.100 7.100 6 C -0.089 4.089 7 C -0.131 4.131 8 C 0.092 3.908 9 F -0.120 7.120 10 C -0.171 4.171 11 C 0.370 3.630 12 O -0.460 6.460 13 N -0.329 5.329 14 C -0.029 4.029 15 C 0.032 3.968 16 H 0.159 0.841 17 C -0.165 4.165 18 C -0.005 4.005 19 H 0.133 0.867 20 C 0.064 3.936 21 N -0.338 5.338 22 C -0.360 4.360 23 H 0.114 0.886 24 C -0.262 4.262 25 N -0.606 5.606 26 Si 0.806 3.194 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.185 1.185 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.207 0.793 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.014 0.986 40 H 0.042 0.958 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.609 -1.198 -19.814 21.258 hybrid contribution 0.439 0.902 1.327 1.664 sum -7.169 -0.296 -18.487 19.830 Atomic orbital electron populations 1.23314 0.75983 1.05619 1.01216 1.85956 1.22379 1.23195 1.94015 1.18332 0.98016 0.87102 0.89487 1.17902 1.02775 0.94062 0.80306 1.91540 1.88709 1.85262 1.44524 1.21476 0.94617 0.91998 1.00837 1.21366 1.00990 1.02666 0.88082 1.17990 0.98168 0.91285 0.83330 1.91582 1.88278 1.84003 1.48166 1.20077 1.06933 0.96117 0.93989 1.17593 0.82725 0.78414 0.84260 1.90737 1.26240 1.65329 1.63734 1.49623 1.17469 1.46424 1.19410 1.23591 0.82093 0.99486 0.97703 1.23561 0.95318 0.90695 0.87180 0.84114 1.24055 0.96113 0.94118 1.02204 1.24260 0.98764 0.93846 0.83635 0.86734 1.21505 0.83912 0.94224 0.93981 1.45470 1.01393 1.53421 1.33566 1.19541 0.83728 1.22600 1.10136 0.88553 1.25663 1.00820 1.00542 0.99156 1.70160 1.29455 1.37170 1.23832 0.85087 0.79628 0.78267 0.76406 1.21795 1.22796 1.18524 0.91458 0.85816 0.94288 0.77992 0.79293 0.93232 0.88954 0.89325 0.88061 0.98640 0.95841 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.13 113.37 1.26 1.95 16 2 O -0.34 -9.37 9.73 -90.24 -0.88 -10.25 16 3 C 0.12 3.19 5.74 22.87 0.13 3.32 16 4 C 0.07 1.43 7.30 22.42 0.16 1.59 16 5 F -0.12 -2.40 17.11 44.97 0.77 -1.63 16 6 C -0.07 -1.02 10.00 22.33 0.22 -0.79 16 7 C -0.11 -2.08 10.00 22.28 0.22 -1.85 16 8 C 0.11 3.39 7.28 22.66 0.17 3.55 16 9 F -0.14 -5.41 16.83 44.97 0.76 -4.65 16 10 C -0.17 -5.49 5.01 -19.98 -0.10 -5.59 16 11 C 0.58 23.65 6.51 86.66 0.56 24.22 16 12 O -0.58 -26.78 17.45 -4.05 -0.07 -26.85 16 13 N -0.60 -23.74 3.01 -767.27 -2.31 -26.05 16 14 C 0.09 3.34 6.15 86.79 0.53 3.87 16 15 C 0.14 4.99 5.53 46.93 0.26 5.25 16 16 H 0.14 4.18 8.14 -2.39 -0.02 4.16 16 17 C -0.13 -4.10 6.82 33.46 0.23 -3.87 16 18 C 0.10 3.98 5.20 46.93 0.24 4.23 16 19 H 0.11 4.60 8.03 -2.39 -0.02 4.58 16 20 C 0.19 9.74 4.76 87.16 0.41 10.15 16 21 N -0.61 -30.02 3.02 -648.54 -1.96 -31.98 16 22 C -0.23 -12.36 10.37 84.03 0.87 -11.49 16 23 H 0.10 4.73 7.83 -2.91 -0.02 4.71 16 24 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 25 N -0.96 -58.92 10.56 21.65 0.23 -58.70 16 26 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 29 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.00 -0.28 7.67 -2.39 -0.02 -0.30 16 40 H 0.02 1.34 7.46 -2.39 -0.02 1.32 16 41 H 0.24 14.80 8.31 -92.70 -0.77 14.03 16 Total: -1.00 -77.73 356.42 5.28 -72.44 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.07 Total: 9.13 kcal Atomic # 6 Polarization: 25.43 SS G_CDS: 5.65 Total: 31.08 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.04 Total: -116.73 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.95 Total: -37.10 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 1.53 Total: -6.28 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.73 5.28 -72.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032556810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.266 kcal (2) G-P(sol) polarization free energy of solvation -77.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds