Wall clock time and date at job start Tue Mar 31 2020 20:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35654 * 117.00082 * 2 1 4 4 C 1.38638 * 120.14194 * 0.25686 * 3 2 1 5 5 C 1.38210 * 120.07047 * 180.27441 * 4 3 2 6 6 Cl 1.73602 * 119.81864 * 179.76386 * 5 4 3 7 7 C 1.38699 * 120.36045 * 359.74931 * 5 4 3 8 8 C 1.37726 * 120.28772 * 359.97040 * 7 5 4 9 9 C 1.39744 * 119.92133 * 0.02900 * 8 7 5 10 10 C 1.47474 * 120.17725 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99683 * 205.04410 * 10 9 8 12 12 N 1.34775 * 120.00331 * 25.04624 * 10 9 8 13 13 C 1.46505 * 119.99773 * 3.46324 * 12 10 9 14 14 C 1.46498 * 120.00359 * 183.46521 * 12 10 9 15 15 H 1.08996 * 110.88173 * 3.87676 * 14 12 10 16 16 C 1.55160 * 111.00165 * 240.00194 * 14 12 10 17 17 C 1.54325 * 102.93759 * 206.38482 * 16 14 12 18 18 N 1.47023 * 107.27461 * 22.18987 * 17 16 14 19 19 C 1.36928 * 125.64834 * 181.01913 * 18 17 16 20 20 H 1.08006 * 120.00031 * 175.14296 * 19 18 17 21 21 C 1.38809 * 120.00454 * 355.15145 * 19 18 17 22 22 N 1.31620 * 120.00472 * 156.53404 * 21 19 18 23 23 Si 1.86806 * 119.99720 * 336.25546 * 21 19 18 24 24 H 1.48497 * 109.47158 * 185.85645 * 23 21 19 25 25 H 1.48498 * 109.47069 * 305.86150 * 23 21 19 26 26 H 1.48506 * 109.47001 * 65.86086 * 23 21 19 27 27 C 1.47420 * 108.69841 * 1.28925 * 18 17 16 28 28 H 1.08998 * 109.46532 * 299.99526 * 1 2 3 29 29 H 1.08996 * 109.47126 * 59.99758 * 1 2 3 30 30 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.96965 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.85338 * 179.97438 * 7 5 4 33 33 H 1.08000 * 120.03699 * 180.02562 * 8 7 5 34 34 H 1.08994 * 109.47227 * 264.05960 * 13 12 10 35 35 H 1.09000 * 109.46873 * 24.06103 * 13 12 10 36 36 H 1.09004 * 109.47105 * 144.05951 * 13 12 10 37 37 H 1.08993 * 110.72146 * 88.02241 * 16 14 12 38 38 H 1.08997 * 110.71905 * 324.74287 * 16 14 12 39 39 H 1.09005 * 109.88280 * 262.77133 * 17 16 14 40 40 H 1.08998 * 110.01021 * 141.68509 * 17 16 14 41 41 H 0.96997 * 119.99899 * 354.71203 * 22 21 19 42 42 H 1.08999 * 110.36687 * 94.48376 * 27 18 17 43 43 H 1.09008 * 110.36304 * 216.80136 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2928 2.3733 0.0054 5 6 1.9218 3.6039 -0.0004 6 17 0.9735 5.0581 0.0002 7 6 3.3065 3.6835 -0.0063 8 6 4.0682 2.5361 -0.0059 9 6 3.4446 1.2855 -0.0001 10 6 4.2547 0.0532 -0.0002 11 8 3.7896 -0.9801 -0.4414 12 7 5.5105 0.0721 0.4888 13 6 6.0442 1.2971 1.0895 14 6 6.3419 -1.1321 0.4195 15 1 5.8258 -1.9304 -0.1138 16 6 6.7683 -1.5957 1.8375 17 6 8.0881 -2.3502 1.5720 18 7 8.6214 -1.8601 0.2925 19 6 9.7717 -2.2931 -0.3109 20 1 10.0387 -1.9259 -1.2910 21 6 10.5947 -3.2042 0.3367 22 7 11.4124 -3.9641 -0.3607 23 14 10.5475 -3.3462 2.1987 24 1 11.6109 -4.2788 2.6512 25 1 10.7721 -2.0085 2.8030 26 1 9.2218 -3.8644 2.6221 27 6 7.7158 -0.8207 -0.2299 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2141 2.3189 0.0100 32 1 3.7894 4.6496 -0.0111 33 1 5.1461 2.6027 -0.0101 34 1 6.6198 1.8463 0.3445 35 1 5.2203 1.9177 1.4420 36 1 6.6895 1.0388 1.9292 37 1 6.0214 -2.2642 2.2656 38 1 6.9385 -0.7383 2.4886 39 1 7.8964 -3.4213 1.5078 40 1 8.8004 -2.1486 2.3720 41 1 11.3858 -3.9430 -1.3301 42 1 8.0628 0.1689 0.0671 43 1 7.6460 -0.8892 -1.3156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033374428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:53 Heat of formation + Delta-G solvation = 17.608773 kcal Electronic energy + Delta-G solvation = -27197.861477 eV Core-core repulsion = 23272.017246 eV Total energy + Delta-G solvation = -3925.844231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10016 -39.54609 -38.07563 -37.56083 -36.72818 -35.08180 -32.58046 -31.47631 -30.72407 -29.47747 -28.31133 -27.57173 -27.15818 -24.47946 -23.40537 -22.71071 -21.21222 -20.53799 -19.47775 -18.31197 -17.60564 -17.42966 -16.92932 -16.30783 -16.10807 -15.75378 -15.30043 -15.10177 -14.77007 -14.60037 -14.04299 -13.78978 -13.60187 -13.46093 -13.24565 -12.91239 -12.78159 -12.48471 -12.35326 -12.26650 -12.17797 -11.96543 -11.64359 -11.45978 -11.34588 -11.06327 -11.05440 -10.95725 -10.49070 -10.04870 -9.77503 -9.48655 -9.30825 -9.02809 -8.73316 -8.60283 -8.39694 -7.08409 -6.32432 -3.18147 0.33473 0.85946 1.56912 2.60597 2.84903 2.92439 3.39144 3.44670 3.52256 3.73489 4.23090 4.28667 4.53629 4.56504 4.65393 4.76974 4.79895 4.89222 4.98842 4.99623 5.12670 5.15604 5.19084 5.22616 5.38051 5.43956 5.44701 5.54698 5.62238 5.66602 5.73402 5.87835 5.91162 6.05574 6.20922 6.38775 6.42663 6.55976 6.74250 6.77772 6.91842 7.43444 7.65593 8.22442 8.33865 9.03863 9.57162 10.22351 11.17489 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.002583 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.892764 B =10839.168027 C =11428.426694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.279 6.279 3 C 0.197 3.803 4 C -0.216 4.216 5 C 0.027 3.973 6 Cl -0.063 7.063 7 C -0.160 4.160 8 C -0.052 4.052 9 C -0.162 4.162 10 C 0.561 3.439 11 O -0.518 6.518 12 N -0.598 5.598 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.112 0.888 16 C -0.139 4.139 17 C 0.120 3.880 18 N -0.609 5.609 19 C -0.327 4.327 20 H 0.080 0.920 21 C -0.018 4.018 22 N -0.919 5.919 23 Si 1.054 2.946 24 H -0.300 1.300 25 H -0.298 1.298 26 H -0.281 1.281 27 C 0.132 3.868 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.026 0.974 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.606 18.261 3.770 30.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.190 6.190 3 C 0.148 3.852 4 C -0.235 4.235 5 C 0.000 4.000 6 Cl -0.034 7.034 7 C -0.179 4.179 8 C -0.070 4.070 9 C -0.166 4.166 10 C 0.349 3.651 11 O -0.394 6.394 12 N -0.330 5.330 13 C -0.085 4.085 14 C 0.023 3.977 15 H 0.130 0.870 16 C -0.178 4.178 17 C -0.006 4.006 18 N -0.337 5.337 19 C -0.454 4.454 20 H 0.097 0.903 21 C -0.218 4.218 22 N -0.560 5.560 23 Si 0.887 3.113 24 H -0.228 1.228 25 H -0.226 1.226 26 H -0.208 1.208 27 C 0.005 3.995 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.061 16.816 4.756 28.935 hybrid contribution -1.011 1.329 -1.222 2.070 sum -24.072 18.146 3.534 30.351 Atomic orbital electron populations 1.23223 0.78202 1.04738 1.01354 1.86373 1.21238 1.24884 1.86459 1.18815 0.90730 0.84542 0.91135 1.21035 1.00955 0.90300 1.11248 1.20870 0.92016 0.87258 0.99848 1.98391 1.72411 1.36061 1.96529 1.20939 0.91222 0.99820 1.05928 1.22018 1.01940 0.89849 0.93194 1.19449 0.90796 0.94632 1.11720 1.17900 0.81056 0.87710 0.78459 1.90824 1.70441 1.32171 1.45954 1.47604 1.13153 1.12920 1.59361 1.22443 1.00037 0.87081 0.98908 1.22478 0.91478 0.86565 0.97220 0.87006 1.22946 0.97946 1.00340 0.96592 1.21916 0.92137 0.97536 0.88966 1.44756 1.24974 1.42635 1.21294 1.20100 0.99091 1.24605 1.01597 0.90270 1.25741 0.95631 0.93968 1.06450 1.70902 1.41596 1.35495 1.07997 0.84118 0.75082 0.75349 0.76722 1.22842 1.22625 1.20848 1.21800 0.87930 0.92424 0.97394 0.92420 0.92311 0.87596 0.83794 0.84026 0.81778 0.91657 0.89760 0.90495 0.90938 0.91190 0.93410 0.95436 0.92733 0.95590 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.14 16 2 O -0.28 -3.47 8.87 -38.87 -0.34 -3.81 16 3 C 0.20 2.27 6.67 -38.71 -0.26 2.01 16 4 C -0.22 -1.93 8.80 -39.44 -0.35 -2.27 16 5 C 0.03 0.23 6.32 -39.42 -0.25 -0.02 16 6 Cl -0.06 -0.47 28.94 -51.86 -1.50 -1.97 16 7 C -0.16 -1.25 9.80 -39.60 -0.39 -1.64 16 8 C -0.05 -0.46 7.50 -39.21 -0.29 -0.76 16 9 C -0.16 -1.97 5.53 -104.84 -0.58 -2.55 16 10 C 0.56 8.65 7.43 -12.50 -0.09 8.55 16 11 O -0.52 -9.96 14.96 -14.93 -0.22 -10.18 16 12 N -0.60 -8.55 2.91 -172.60 -0.50 -9.06 16 13 C 0.06 0.59 7.46 59.85 0.45 1.03 16 14 C 0.13 2.21 3.46 -65.67 -0.23 1.98 16 15 H 0.11 2.20 7.03 -51.93 -0.37 1.84 16 16 C -0.14 -2.39 6.53 -24.89 -0.16 -2.55 16 17 C 0.12 2.62 4.58 -3.06 -0.01 2.60 16 18 N -0.61 -14.97 3.34 -169.94 -0.57 -15.54 16 19 C -0.33 -9.41 10.49 -15.06 -0.16 -9.57 16 20 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 21 C -0.02 -0.53 5.47 -17.43 -0.10 -0.62 16 22 N -0.92 -29.02 13.70 55.49 0.76 -28.26 16 23 Si 1.05 26.51 24.71 -169.99 -4.20 22.31 16 24 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.30 -7.21 7.08 56.52 0.40 -6.81 16 26 H -0.28 -6.46 5.22 56.52 0.30 -6.16 16 27 C 0.13 2.64 6.79 -2.42 -0.02 2.62 16 28 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 29 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 32 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.17 1.19 4.41 -52.49 -0.23 0.96 16 34 H 0.07 0.58 6.96 -51.93 -0.36 0.21 16 35 H 0.08 0.67 4.95 -51.93 -0.26 0.42 16 36 H 0.08 0.79 6.38 -51.93 -0.33 0.46 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 39 H 0.05 1.11 6.85 -51.93 -0.36 0.76 16 40 H 0.03 0.63 4.24 -51.93 -0.22 0.41 16 41 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 42 H 0.03 0.49 6.87 -51.93 -0.36 0.13 16 43 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -35.39 348.43 -8.08 -43.47 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.31 Total: -2.17 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.45 Total: -0.04 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.31 Total: -52.85 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.57 Total: -13.99 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -4.20 Total: 22.31 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.39 -8.08 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033374428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.077 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds