Wall clock time and date at job start Tue Mar 31 2020 20:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35653 * 117.00178 * 2 1 4 4 C 1.38645 * 120.13870 * 0.21861 * 3 2 1 5 5 C 1.38203 * 120.06826 * 180.27466 * 4 3 2 6 6 Cl 1.73606 * 119.81948 * 179.71587 * 5 4 3 7 7 C 1.38702 * 120.36375 * 359.74137 * 5 4 3 8 8 C 1.37725 * 120.28676 * 0.02562 * 7 5 4 9 9 C 1.39748 * 119.91877 * 359.97438 * 8 7 5 10 10 C 1.47478 * 120.17543 * 179.97438 * 9 8 7 11 11 O 1.21601 * 119.99619 * 205.05748 * 10 9 8 12 12 N 1.34773 * 120.00336 * 25.05107 * 10 9 8 13 13 C 1.46500 * 119.99738 * 2.03413 * 12 10 9 14 14 C 1.46502 * 119.99934 * 182.02875 * 12 10 9 15 15 H 1.08993 * 110.78178 * 1.78987 * 14 12 10 16 16 C 1.55154 * 110.71602 * 125.03049 * 14 12 10 17 17 C 1.55125 * 101.48854 * 82.69437 * 16 14 12 18 18 N 1.47419 * 104.72501 * 37.29563 * 17 16 14 19 19 C 1.36933 * 125.65417 * 155.81448 * 18 17 16 20 20 H 1.07996 * 120.00423 * 192.12112 * 19 18 17 21 21 C 1.38806 * 119.99810 * 12.12407 * 19 18 17 22 22 N 1.31621 * 120.00345 * 205.46959 * 21 19 18 23 23 Si 1.86806 * 120.00120 * 25.46925 * 21 19 18 24 24 H 1.48498 * 109.47039 * 270.00234 * 23 21 19 25 25 H 1.48504 * 109.46900 * 29.99937 * 23 21 19 26 26 H 1.48494 * 109.47418 * 149.99993 * 23 21 19 27 27 C 1.47028 * 108.69898 * 335.55315 * 18 17 16 28 28 H 1.09001 * 109.46744 * 299.99268 * 1 2 3 29 29 H 1.09000 * 109.47288 * 59.99960 * 1 2 3 30 30 H 1.09002 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.96519 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.85699 * 180.02562 * 7 5 4 33 33 H 1.07994 * 120.03818 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46873 * 264.08852 * 13 12 10 35 35 H 1.08997 * 109.47708 * 24.09170 * 13 12 10 36 36 H 1.09001 * 109.47318 * 144.09211 * 13 12 10 37 37 H 1.09008 * 111.00346 * 200.94020 * 16 14 12 38 38 H 1.09008 * 111.00443 * 324.74455 * 16 14 12 39 39 H 1.08998 * 110.49918 * 278.45233 * 17 16 14 40 40 H 1.09008 * 110.34241 * 156.05527 * 17 16 14 41 41 H 0.96998 * 119.99506 * 354.92702 * 22 21 19 42 42 H 1.08996 * 109.88535 * 120.70384 * 27 18 17 43 43 H 1.09004 * 109.88044 * 241.71163 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 0.0046 5 6 1.9216 3.6039 -0.0012 6 17 0.9733 5.0581 -0.0029 7 6 3.3064 3.6835 -0.0061 8 6 4.0681 2.5361 -0.0059 9 6 3.4445 1.2855 -0.0001 10 6 4.2547 0.0532 -0.0004 11 8 3.7896 -0.9800 -0.4419 12 7 5.5105 0.0722 0.4885 13 6 6.0551 1.3058 1.0609 14 6 6.3309 -1.1409 0.4475 15 1 5.7919 -1.9562 -0.0350 16 6 7.6768 -0.8692 -0.2750 17 6 8.5219 -0.2499 0.8689 18 7 8.1254 -0.9985 2.0754 19 6 8.8848 -1.1531 3.2043 20 1 8.5967 -1.8748 3.9543 21 6 10.0248 -0.3820 3.3848 22 7 11.0039 -0.8230 4.1460 23 14 10.1696 1.2815 2.5474 24 1 10.7977 1.1108 1.2127 25 1 8.8174 1.8738 2.3860 26 1 11.0087 2.1824 3.3777 27 6 6.7770 -1.5466 1.8681 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2141 2.3187 0.0086 32 1 3.7894 4.6496 -0.0102 33 1 5.1460 2.6028 -0.0102 34 1 6.6353 1.8326 0.3034 35 1 5.2369 1.9416 1.3991 36 1 6.6983 1.0612 1.9062 37 1 8.1211 -1.7971 -0.6354 38 1 7.5456 -0.1586 -1.0911 39 1 8.2890 0.8085 0.9856 40 1 9.5852 -0.3856 0.6707 41 1 10.8991 -1.6516 4.6393 42 1 6.8012 -2.6330 1.9528 43 1 6.0909 -1.1325 2.6070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033374429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:56 Heat of formation + Delta-G solvation = 13.939244 kcal Electronic energy + Delta-G solvation = -27714.402257 eV Core-core repulsion = 23788.398904 eV Total energy + Delta-G solvation = -3926.003354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05403 -39.59602 -38.01282 -37.57412 -36.65992 -34.66598 -32.57361 -31.34566 -30.65065 -29.47041 -28.57984 -27.57771 -26.71981 -24.38994 -23.30685 -22.70574 -21.30036 -20.51756 -19.25063 -18.21215 -17.51957 -17.43829 -16.81287 -16.28772 -16.01487 -15.68481 -15.21596 -15.14669 -14.72522 -14.37639 -14.11973 -13.74996 -13.63396 -13.42625 -13.08778 -13.00232 -12.55088 -12.38708 -12.22530 -12.04553 -11.89869 -11.80868 -11.57394 -11.34604 -11.20944 -11.18381 -10.97416 -10.92371 -10.70874 -10.06005 -9.70692 -9.59365 -9.28173 -9.19517 -8.66586 -8.50668 -8.39589 -7.09677 -6.34267 -3.21290 0.41687 0.94102 1.64212 2.68028 2.90851 3.03939 3.36498 3.43656 3.48309 3.61751 4.31574 4.37816 4.56530 4.60701 4.64775 4.83983 4.84387 4.98356 5.02079 5.09682 5.13493 5.22369 5.27217 5.31314 5.46831 5.51080 5.56229 5.64569 5.74505 5.81555 5.90855 5.97126 6.03658 6.13652 6.25316 6.33186 6.52743 6.56701 6.72332 6.86338 6.98711 7.52907 7.70527 8.29303 8.33114 9.02682 9.57345 10.24482 11.14050 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.003295 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.663324 B = 8496.540760 C = 9669.709069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.279 6.279 3 C 0.196 3.804 4 C -0.217 4.217 5 C 0.027 3.973 6 Cl -0.064 7.064 7 C -0.160 4.160 8 C -0.052 4.052 9 C -0.162 4.162 10 C 0.561 3.439 11 O -0.526 6.526 12 N -0.592 5.592 13 C 0.049 3.951 14 C 0.128 3.872 15 H 0.108 0.892 16 C -0.140 4.140 17 C 0.098 3.902 18 N -0.606 5.606 19 C -0.327 4.327 20 H 0.075 0.925 21 C -0.021 4.021 22 N -0.921 5.921 23 Si 1.064 2.936 24 H -0.294 1.294 25 H -0.287 1.287 26 H -0.299 1.299 27 C 0.126 3.874 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.263 0.737 42 H 0.039 0.961 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.918 9.979 -10.934 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.190 6.190 3 C 0.147 3.853 4 C -0.236 4.236 5 C 0.000 4.000 6 Cl -0.035 7.035 7 C -0.179 4.179 8 C -0.070 4.070 9 C -0.166 4.166 10 C 0.350 3.650 11 O -0.403 6.403 12 N -0.324 5.324 13 C -0.094 4.094 14 C 0.025 3.975 15 H 0.126 0.874 16 C -0.179 4.179 17 C -0.027 4.027 18 N -0.334 5.334 19 C -0.455 4.455 20 H 0.092 0.908 21 C -0.221 4.221 22 N -0.562 5.562 23 Si 0.897 3.103 24 H -0.222 1.222 25 H -0.214 1.214 26 H -0.227 1.227 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.184 0.816 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.101 10.576 -11.294 25.367 hybrid contribution -1.410 -0.843 0.402 1.691 sum -21.511 9.733 -10.892 26.002 Atomic orbital electron populations 1.23212 0.78304 1.04641 1.01343 1.86365 1.21150 1.24924 1.86543 1.18796 0.90702 0.84502 0.91250 1.21017 1.00894 0.90306 1.11388 1.20863 0.91989 0.87223 0.99893 1.98388 1.72416 1.36117 1.96543 1.20951 0.91223 0.99855 1.05865 1.22099 1.02086 0.89904 0.92951 1.19439 0.90789 0.94676 1.11676 1.17903 0.81087 0.87679 0.78381 1.90790 1.70658 1.32203 1.46608 1.47651 1.13068 1.12178 1.59498 1.22756 1.00059 0.86539 1.00009 1.22137 0.91138 0.86626 0.97635 0.87440 1.23125 0.95276 1.01801 0.97680 1.22242 0.98500 0.95295 0.86655 1.44830 1.13299 1.61834 1.13463 1.20013 1.07269 1.19839 0.98339 0.90757 1.25860 0.91818 1.03352 1.01094 1.70899 1.28337 1.24768 1.32159 0.83848 0.74744 0.76830 0.74900 1.22186 1.21395 1.22725 1.21668 0.87871 0.97439 0.93033 0.92418 0.92377 0.87667 0.83831 0.84007 0.81631 0.92033 0.90010 0.88538 0.89964 0.91213 0.94740 0.92209 0.92665 0.94288 0.94937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.64 8.87 -38.87 -0.34 -3.98 16 3 C 0.20 2.44 6.67 -38.71 -0.26 2.18 16 4 C -0.22 -2.14 8.80 -39.44 -0.35 -2.48 16 5 C 0.03 0.26 6.32 -39.42 -0.25 0.01 16 6 Cl -0.06 -0.54 28.94 -51.86 -1.50 -2.04 16 7 C -0.16 -1.47 9.80 -39.60 -0.39 -1.86 16 8 C -0.05 -0.55 7.50 -39.21 -0.29 -0.84 16 9 C -0.16 -2.16 5.55 -104.84 -0.58 -2.74 16 10 C 0.56 9.08 7.44 -12.50 -0.09 8.98 16 11 O -0.53 -10.02 14.95 -14.93 -0.22 -10.25 16 12 N -0.59 -9.35 2.83 -173.09 -0.49 -9.84 16 13 C 0.05 0.68 6.71 59.85 0.40 1.08 16 14 C 0.13 2.21 3.58 -66.10 -0.24 1.97 16 15 H 0.11 1.86 7.01 -51.93 -0.36 1.50 16 16 C -0.14 -2.32 6.54 -24.47 -0.16 -2.48 16 17 C 0.10 2.00 3.84 -2.42 -0.01 1.99 16 18 N -0.61 -14.28 2.87 -169.94 -0.49 -14.77 16 19 C -0.33 -9.14 10.43 -15.06 -0.16 -9.29 16 20 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 21 C -0.02 -0.60 5.41 -17.43 -0.09 -0.69 16 22 N -0.92 -28.41 13.70 55.49 0.76 -27.65 16 23 Si 1.06 25.41 24.69 -169.99 -4.20 21.21 16 24 H -0.29 -6.67 6.60 56.52 0.37 -6.30 16 25 H -0.29 -6.13 5.98 56.52 0.34 -5.79 16 26 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 27 C 0.13 2.57 6.20 -3.06 -0.02 2.55 16 28 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.17 1.54 4.36 -52.49 -0.23 1.31 16 34 H 0.06 0.74 6.87 -51.93 -0.36 0.38 16 35 H 0.08 0.97 4.81 -51.93 -0.25 0.72 16 36 H 0.10 1.68 5.36 -51.93 -0.28 1.40 16 37 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.04 0.69 2.95 -51.93 -0.15 0.53 16 40 H 0.06 1.33 6.21 -51.92 -0.32 1.01 16 41 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -33.54 345.80 -8.04 -41.59 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.28 Total: 0.99 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.49 Total: -0.47 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.22 Total: -52.26 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.57 Total: -14.23 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.20 Total: 21.21 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.54 -8.04 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033374429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.524 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds