Wall clock time and date at job start Tue Mar 31 2020 20:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35936 * 117.00369 * 2 1 4 4 C 1.38407 * 119.98790 * 0.02562 * 3 2 1 5 5 C 1.39547 * 119.80854 * 179.97438 * 4 3 2 6 6 C 1.47796 * 120.10552 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00484 * 327.76400 * 6 5 4 8 8 N 1.34779 * 119.99883 * 147.76561 * 6 5 4 9 9 C 1.46498 * 119.99781 * 4.00640 * 8 6 5 10 10 C 1.46501 * 119.99886 * 184.01541 * 8 6 5 11 11 H 1.08993 * 110.88898 * 3.87241 * 10 8 6 12 12 C 1.55158 * 110.99784 * 239.99697 * 10 8 6 13 13 C 1.54327 * 102.94193 * 277.42636 * 12 10 8 14 14 N 1.47022 * 107.26968 * 337.80858 * 13 12 10 15 15 C 1.36939 * 125.64818 * 178.98943 * 14 13 12 16 16 H 1.07997 * 120.00039 * 179.97438 * 15 14 13 17 17 C 1.38813 * 119.99820 * 359.97437 * 15 14 13 18 18 N 1.31616 * 120.00376 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99811 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47209 * 59.99912 * 19 17 15 21 21 H 1.48507 * 109.47054 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46868 * 299.99225 * 19 17 15 23 23 C 1.47422 * 108.70247 * 358.93962 * 14 13 12 24 24 C 1.39624 * 119.78703 * 0.02562 * 5 4 3 25 25 C 1.37925 * 119.96974 * 359.97438 * 24 5 4 26 26 C 1.38416 * 120.19617 * 359.74489 * 25 24 5 27 27 Cl 1.73605 * 119.89195 * 180.27957 * 26 25 24 28 28 H 1.08998 * 109.46668 * 299.99829 * 1 2 3 29 29 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47183 * 59.99500 * 1 2 3 31 31 H 1.08001 * 120.09408 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.47006 * 95.49166 * 9 8 6 33 33 H 1.09002 * 109.47091 * 215.48653 * 9 8 6 34 34 H 1.08996 * 109.47737 * 335.48948 * 9 8 6 35 35 H 1.08998 * 110.72540 * 35.79168 * 12 10 8 36 36 H 1.09004 * 110.71939 * 159.06698 * 12 10 8 37 37 H 1.08996 * 109.88276 * 97.22572 * 13 12 10 38 38 H 1.09001 * 109.88334 * 218.24031 * 13 12 10 39 39 H 0.96996 * 120.00675 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.36984 * 265.28393 * 23 14 13 41 41 H 1.09003 * 110.36240 * 142.96756 * 23 14 13 42 42 H 1.08000 * 120.01535 * 179.97438 * 24 5 4 43 43 H 1.07998 * 119.89948 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2922 2.3718 0.0005 5 6 1.9297 3.6132 0.0011 6 6 1.1310 4.8567 0.0022 7 8 0.0530 4.8874 -0.5588 8 7 1.5978 5.9569 0.6253 9 6 2.9341 5.9471 1.2256 10 6 0.7689 7.1623 0.7024 11 1 -0.2161 6.9849 0.2707 12 6 1.4694 8.3638 0.0145 13 6 2.4248 8.8807 1.1107 14 7 1.8978 8.4179 2.4028 15 6 2.4677 8.6494 3.6262 16 1 2.0005 8.2654 4.5210 17 6 3.6460 9.3777 3.7164 18 7 4.2158 9.8453 2.6259 19 14 4.4238 9.6929 5.3853 20 1 4.7530 8.3967 6.0308 21 1 5.6660 10.4877 5.2103 22 1 3.4713 10.4446 6.2412 23 6 0.6535 7.6645 2.1633 24 6 3.3245 3.6766 0.0005 25 6 4.0671 2.5143 0.0000 26 6 3.4337 1.2836 0.0053 27 17 4.3762 -0.1744 0.0120 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 0.2136 2.3169 0.0014 32 1 3.6518 6.3683 0.5215 33 1 2.9270 6.5439 2.1378 34 1 3.2179 4.9222 1.4643 35 1 2.0290 8.0344 -0.8609 36 1 0.7431 9.1300 -0.2566 37 1 3.4245 8.4764 0.9518 38 1 2.4581 9.9700 1.0900 39 1 5.0393 10.3539 2.6888 40 1 -0.2124 8.3173 2.2728 41 1 0.5828 6.8208 2.8499 42 1 3.8217 4.6353 0.0005 43 1 5.1459 2.5647 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033474302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:58 Heat of formation + Delta-G solvation = 6.802811 kcal Electronic energy + Delta-G solvation = -27507.155953 eV Core-core repulsion = 23580.843140 eV Total energy + Delta-G solvation = -3926.312813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83250 -39.67414 -37.81812 -37.27899 -36.47877 -34.42725 -32.40635 -31.15186 -30.52970 -29.31191 -28.06516 -27.37897 -26.35375 -24.68159 -23.55600 -22.51504 -21.02083 -20.13273 -19.23057 -18.10957 -17.12135 -17.04101 -16.54468 -16.26024 -16.04556 -15.71021 -15.06121 -14.72418 -14.48610 -14.14679 -13.97103 -13.81080 -13.51411 -13.27988 -12.93992 -12.55145 -12.19276 -12.11037 -11.99618 -11.78603 -11.73096 -11.68960 -11.48850 -11.14962 -11.00345 -10.96955 -10.81062 -10.78787 -10.35697 -10.21792 -9.99274 -9.72550 -9.55814 -9.14680 -8.76328 -8.40419 -8.27263 -6.88710 -5.80628 -3.15265 0.56453 1.05737 1.94024 2.73218 2.89565 3.18016 3.34809 3.40418 3.40794 3.54970 4.41878 4.44158 4.49441 4.74487 4.87515 4.91919 4.95351 5.13418 5.25381 5.29800 5.38386 5.39449 5.44360 5.57564 5.64081 5.71334 5.83737 5.88820 5.98613 6.05849 6.14635 6.25606 6.30623 6.43920 6.48219 6.56081 6.71889 6.93835 6.97856 7.47488 7.52456 7.68456 7.73937 8.14884 8.29960 9.12340 9.71745 10.36968 11.30106 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.003139 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.144572 B = 8917.073714 C =10005.349573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.127 3.873 4 C -0.144 4.144 5 C -0.079 4.079 6 C 0.551 3.449 7 O -0.548 6.548 8 N -0.576 5.576 9 C 0.044 3.956 10 C 0.122 3.878 11 H 0.101 0.899 12 C -0.155 4.155 13 C 0.174 3.826 14 N -0.602 5.602 15 C -0.234 4.234 16 H 0.077 0.923 17 C -0.003 4.003 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.125 3.875 24 C -0.121 4.121 25 C -0.082 4.082 26 C -0.051 4.051 27 Cl -0.057 7.057 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.146 0.854 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.254 0.746 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.159 0.841 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -16.682 -6.716 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.080 3.920 4 C -0.164 4.164 5 C -0.082 4.082 6 C 0.339 3.661 7 O -0.428 6.428 8 N -0.305 5.305 9 C -0.098 4.098 10 C 0.019 3.981 11 H 0.118 0.882 12 C -0.195 4.195 13 C 0.050 3.950 14 N -0.329 5.329 15 C -0.362 4.362 16 H 0.095 0.905 17 C -0.200 4.200 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.002 4.002 24 C -0.139 4.139 25 C -0.100 4.100 26 C -0.079 4.079 27 Cl -0.028 7.028 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.176 0.824 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.034 -16.834 -6.902 18.445 hybrid contribution 0.382 0.327 0.897 1.029 sum -2.651 -16.507 -6.005 17.764 Atomic orbital electron populations 1.23155 0.77770 1.04273 1.01944 1.86151 1.21765 1.25430 1.88474 1.18481 0.90398 0.85109 0.97982 1.21205 1.00816 0.90097 1.04284 1.19845 0.93851 0.93401 1.01127 1.18225 0.85487 0.83160 0.79181 1.90740 1.22389 1.84495 1.45173 1.47604 1.17637 1.11802 1.53497 1.22836 0.81956 1.03049 1.01911 1.22313 0.94275 0.83448 0.98109 0.88153 1.23259 1.00169 0.96605 0.99431 1.21232 0.94056 0.98008 0.81706 1.44575 1.23291 1.61873 1.03192 1.18981 1.04202 1.29339 0.83665 0.90494 1.24776 0.97935 1.00053 0.97209 1.69945 1.20376 1.40606 1.25657 0.86233 0.78597 0.77884 0.83225 1.21108 1.21603 1.21211 1.21892 0.90871 0.94723 0.92683 1.21945 0.92740 0.99774 0.99448 1.20922 1.00944 0.89316 0.98836 1.20385 0.88724 0.88952 1.09803 1.98367 1.71738 1.35769 1.96927 0.92253 0.87861 0.92170 0.83644 0.92268 0.86269 0.90811 0.91860 0.91279 0.93105 0.93924 0.93612 0.94992 0.93755 0.82380 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.40 9.94 -19.54 -0.19 -3.60 16 3 C 0.13 1.54 6.67 -39.26 -0.26 1.28 16 4 C -0.14 -1.84 8.59 -39.03 -0.34 -2.17 16 5 C -0.08 -1.10 5.46 -104.98 -0.57 -1.67 16 6 C 0.55 9.11 7.44 -12.35 -0.09 9.01 16 7 O -0.55 -10.36 16.15 5.31 0.09 -10.28 16 8 N -0.58 -9.62 2.91 -172.62 -0.50 -10.12 16 9 C 0.04 0.72 7.03 59.85 0.42 1.14 16 10 C 0.12 2.17 3.66 -65.78 -0.24 1.93 16 11 H 0.10 1.75 7.03 -51.93 -0.37 1.39 16 12 C -0.16 -2.80 6.48 -24.89 -0.16 -2.96 16 13 C 0.17 3.88 4.36 -3.06 -0.01 3.86 16 14 N -0.60 -13.95 1.89 -170.08 -0.32 -14.27 16 15 C -0.23 -6.00 9.80 -15.06 -0.15 -6.15 16 16 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 17 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 18 N -0.92 -25.05 10.31 55.49 0.57 -24.47 16 19 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.13 2.46 6.36 -2.53 -0.02 2.44 16 24 C -0.12 -1.45 7.42 -39.18 -0.29 -1.74 16 25 C -0.08 -0.89 9.80 -39.63 -0.39 -1.27 16 26 C -0.05 -0.60 6.34 -39.25 -0.25 -0.85 16 27 Cl -0.06 -0.63 28.49 -51.86 -1.48 -2.11 16 28 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.15 1.74 6.19 -52.49 -0.32 1.41 16 32 H 0.06 0.93 6.93 -51.93 -0.36 0.57 16 33 H 0.12 2.37 5.12 -51.93 -0.27 2.11 16 34 H 0.07 1.02 4.68 -51.93 -0.24 0.78 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 38 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 39 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.16 1.81 4.86 -52.49 -0.26 1.55 16 43 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -29.52 354.03 -8.38 -37.90 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.40 Total: 1.87 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.45 Total: 3.83 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.25 Total: -48.87 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.11 Total: -13.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.52 -8.38 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033474302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.702 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds