Wall clock time and date at job start Tue Mar 31 2020 20:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35706 * 117.00100 * 2 1 4 4 C 1.39055 * 119.89794 * 179.97438 * 3 2 1 5 5 C 1.37647 * 120.12324 * 179.97438 * 4 3 2 6 6 C 1.39782 * 119.92377 * 359.97438 * 5 4 3 7 7 C 1.47527 * 120.09964 * 180.02562 * 6 5 4 8 8 O 1.21589 * 119.99778 * 229.42409 * 7 6 5 9 9 N 1.34780 * 119.99930 * 49.42629 * 7 6 5 10 10 C 1.46494 * 120.00028 * 355.74951 * 9 7 6 11 11 C 1.46500 * 119.99783 * 175.75430 * 9 7 6 12 12 H 1.09003 * 110.88755 * 3.88060 * 11 9 7 13 13 C 1.55160 * 111.00116 * 240.00016 * 11 9 7 14 14 C 1.54325 * 102.93828 * 206.42224 * 13 11 9 15 15 N 1.47027 * 107.27342 * 22.19635 * 14 13 11 16 16 C 1.36932 * 125.64919 * 181.02322 * 15 14 13 17 17 H 1.07997 * 120.00071 * 185.40176 * 16 15 14 18 18 C 1.38813 * 119.99952 * 5.40075 * 16 15 14 19 19 N 1.31616 * 120.00038 * 6.05319 * 18 16 15 20 20 Si 1.86803 * 119.99893 * 185.77908 * 18 16 15 21 21 H 1.48503 * 109.46860 * 265.28006 * 20 18 16 22 22 H 1.48496 * 109.47071 * 25.27933 * 20 18 16 23 23 H 1.48494 * 109.47118 * 145.27915 * 20 18 16 24 24 C 1.47422 * 108.70058 * 1.28326 * 15 14 13 25 25 C 1.39853 * 119.80107 * 0.27657 * 6 5 4 26 26 Cl 1.73604 * 120.06596 * 179.70258 * 25 6 5 27 27 C 1.37898 * 119.87292 * 359.44598 * 25 6 5 28 28 H 1.09003 * 109.46761 * 60.00620 * 1 2 3 29 29 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47428 * 299.99762 * 1 2 3 31 31 H 1.07999 * 119.94207 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.03916 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47240 * 275.18357 * 10 9 7 34 34 H 1.09009 * 109.47092 * 35.18689 * 10 9 7 35 35 H 1.09006 * 109.47077 * 155.17563 * 10 9 7 36 36 H 1.09002 * 110.72074 * 88.06144 * 13 11 9 37 37 H 1.08996 * 110.71815 * 324.78295 * 13 11 9 38 38 H 1.09000 * 109.88831 * 262.77103 * 14 13 11 39 39 H 1.09005 * 110.00895 * 141.68027 * 14 13 11 40 40 H 0.97003 * 119.99848 * 179.72984 * 19 18 16 41 41 H 1.08996 * 110.37174 * 94.48667 * 24 15 14 42 42 H 1.08999 * 110.36418 * 216.81028 * 24 15 14 43 43 H 1.08000 * 119.96199 * 180.25820 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4339 1.2794 0.0005 5 6 4.0636 2.5034 0.0000 6 6 3.3054 3.6777 -0.0016 7 6 3.9763 4.9916 -0.0028 8 8 3.6424 5.8453 0.7960 9 7 4.9593 5.2455 -0.8892 10 6 5.4255 4.1876 -1.7890 11 6 5.5617 6.5794 -0.9528 12 1 5.1540 7.2274 -0.1768 13 6 5.3728 7.2085 -2.3585 14 6 6.5656 8.1818 -2.4647 15 7 7.5921 7.7191 -1.5192 16 6 8.8004 8.3229 -1.2944 17 1 9.5239 7.8569 -0.6420 18 6 9.0952 9.5341 -1.9051 19 7 8.1724 10.1608 -2.6036 20 14 10.7996 10.2783 -1.7293 21 1 10.8040 11.2440 -0.6012 22 1 11.7852 9.2003 -1.4619 23 1 11.1643 10.9822 -2.9849 24 6 7.1077 6.4938 -0.8579 25 6 1.9089 3.6033 0.0032 26 17 0.9605 5.0574 0.0090 27 6 1.2866 2.3727 -0.0021 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0196 0.3720 0.0014 32 1 5.1424 2.5564 0.0000 33 1 6.1780 3.5843 -1.2813 34 1 4.5841 3.5555 -2.0733 35 1 5.8610 4.6360 -2.6820 36 1 4.4278 7.7489 -2.4154 37 1 5.4285 6.4442 -3.1336 38 1 6.2462 9.1900 -2.2010 39 1 6.9650 8.1730 -3.4789 40 1 8.3773 11.0092 -3.0271 41 1 7.4738 5.6103 -1.3808 42 1 7.4229 6.4759 0.1854 43 1 0.2082 2.3137 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033509779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:30 Heat of formation + Delta-G solvation = -8.523468 kcal Electronic energy + Delta-G solvation = -26940.223534 eV Core-core repulsion = 23013.246125 eV Total energy + Delta-G solvation = -3926.977410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85393 -39.77245 -37.90588 -37.03155 -36.51616 -34.79575 -32.24571 -31.36800 -30.76519 -29.15037 -27.95242 -27.48916 -26.62911 -24.60676 -23.39388 -22.99553 -20.79591 -20.10980 -19.14497 -18.59977 -17.52096 -16.99171 -16.77998 -16.29953 -16.18005 -15.44320 -14.90986 -14.72352 -14.57895 -14.33795 -14.11971 -13.88162 -13.54537 -13.21412 -12.99044 -12.67343 -12.55675 -12.35437 -12.27473 -12.20829 -11.99232 -11.75010 -11.50153 -11.16674 -11.07368 -10.92002 -10.82186 -10.76365 -10.26413 -10.08124 -9.84859 -9.74757 -9.62672 -9.29266 -8.64485 -8.62298 -8.33268 -6.83027 -5.69608 -3.06179 0.61668 0.76200 1.85257 2.68714 2.73180 3.04433 3.34563 3.41310 3.46473 3.48457 4.30211 4.39918 4.44252 4.51663 4.66483 4.68320 4.81517 5.01244 5.05796 5.14680 5.21077 5.32745 5.42359 5.54157 5.55875 5.64622 5.66759 5.71746 5.75500 5.84217 5.89536 6.08742 6.20895 6.31288 6.51748 6.58689 6.69978 6.79969 6.96570 7.47816 7.55468 7.65410 7.83389 8.25084 8.29765 9.20880 9.81594 10.46662 11.40020 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.002515 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.386186 B =11130.303213 C =11723.641895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.309 6.309 3 C 0.157 3.843 4 C -0.153 4.153 5 C -0.038 4.038 6 C -0.152 4.152 7 C 0.558 3.442 8 O -0.521 6.521 9 N -0.594 5.594 10 C 0.073 3.927 11 C 0.124 3.876 12 H 0.108 0.892 13 C -0.152 4.152 14 C 0.174 3.826 15 N -0.602 5.602 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.131 3.869 25 C 0.047 3.953 26 Cl -0.040 7.040 27 C -0.210 4.210 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.252 0.748 41 H 0.023 0.977 42 H 0.042 0.958 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 -21.952 2.325 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.110 3.890 4 C -0.171 4.171 5 C -0.057 4.057 6 C -0.156 4.156 7 C 0.345 3.655 8 O -0.397 6.397 9 N -0.326 5.326 10 C -0.070 4.070 11 C 0.021 3.979 12 H 0.126 0.874 13 C -0.191 4.191 14 C 0.049 3.951 15 N -0.328 5.328 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.004 3.996 25 C 0.019 3.981 26 Cl -0.010 7.010 27 C -0.230 4.230 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.200 -21.338 2.672 26.923 hybrid contribution 0.505 0.600 -0.069 0.787 sum -15.695 -20.738 2.603 26.138 Atomic orbital electron populations 1.23172 0.77773 1.04436 1.01862 1.86068 1.21929 1.26247 1.87954 1.19047 0.92206 0.83830 0.93902 1.20449 0.91183 0.98888 1.06620 1.21231 1.00564 0.89796 0.94059 1.19767 0.92039 0.94881 1.08931 1.17982 0.79822 0.86475 0.81214 1.90823 1.63898 1.46829 1.38114 1.47718 1.36196 1.12648 1.35989 1.21938 0.99662 0.90653 0.94792 1.22555 0.94566 0.81602 0.99194 0.87371 1.23225 1.00694 0.99680 0.95473 1.21216 0.85103 0.95306 0.93464 1.44386 1.17081 1.26284 1.45082 1.19044 0.90291 1.01635 1.24715 0.90402 1.24828 0.98206 0.96990 1.00400 1.69953 1.31720 1.16739 1.38277 0.86091 0.83516 0.79021 0.77073 1.21597 1.20640 1.21661 1.21805 0.90285 0.90925 0.96569 1.20616 0.90581 0.88355 0.98574 1.98426 1.71250 1.35178 1.96184 1.21015 1.00901 0.90278 1.10797 0.92190 0.87793 0.92205 0.83876 0.83391 0.92366 0.91410 0.89998 0.91845 0.92191 0.91827 0.94922 0.93725 0.95951 0.94006 0.83899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.45 10.48 -18.82 -0.20 -2.65 16 3 C 0.16 1.41 6.69 -39.03 -0.26 1.14 16 4 C -0.15 -1.30 9.97 -39.49 -0.39 -1.69 16 5 C -0.04 -0.37 7.79 -39.22 -0.31 -0.67 16 6 C -0.15 -1.94 4.87 -104.93 -0.51 -2.45 16 7 C 0.56 8.95 6.74 -12.47 -0.08 8.87 16 8 O -0.52 -10.23 15.23 5.29 0.08 -10.15 16 9 N -0.59 -9.13 2.91 -172.57 -0.50 -9.63 16 10 C 0.07 0.84 7.65 59.84 0.46 1.29 16 11 C 0.12 2.34 3.46 -65.66 -0.23 2.11 16 12 H 0.11 2.30 7.02 -51.93 -0.36 1.94 16 13 C -0.15 -2.89 6.49 -24.89 -0.16 -3.05 16 14 C 0.17 4.24 5.43 -3.06 -0.02 4.22 16 15 N -0.60 -15.43 3.39 -169.93 -0.58 -16.01 16 16 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 19 N -0.92 -27.13 10.42 55.49 0.58 -26.56 16 20 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 C 0.13 2.74 6.79 -2.41 -0.02 2.72 16 25 C 0.05 0.57 6.33 -39.10 -0.25 0.32 16 26 Cl -0.04 -0.53 27.16 -51.86 -1.41 -1.94 16 27 C -0.21 -2.00 8.80 -39.46 -0.35 -2.34 16 28 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.15 1.20 6.34 -52.48 -0.33 0.87 16 33 H 0.06 0.57 7.06 -51.93 -0.37 0.20 16 34 H 0.07 0.66 6.32 -51.92 -0.33 0.33 16 35 H 0.08 0.99 6.37 -51.93 -0.33 0.66 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.03 6.46 -51.93 -0.34 0.69 16 38 H 0.06 1.74 6.93 -51.93 -0.36 1.38 16 39 H 0.03 0.86 7.92 -51.93 -0.41 0.44 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.44 6.96 -51.93 -0.36 0.08 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.14 1.05 6.27 -52.49 -0.33 0.72 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -33.57 358.61 -8.57 -42.14 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.55 Total: -2.48 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.37 Total: 4.69 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.50 Total: -52.19 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.12 Total: -12.80 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.41 Total: -1.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.57 -8.57 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033509779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.618 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds