Wall clock time and date at job start Tue Mar 31 2020 20:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35911 * 116.99961 * 2 1 4 4 C 1.38831 * 119.97570 * 359.73151 * 3 2 1 5 5 C 1.38353 * 120.22619 * 179.76231 * 4 3 2 6 6 Cl 1.73593 * 119.91059 * 180.25446 * 5 4 3 7 7 C 1.38129 * 120.17586 * 0.50829 * 5 4 3 8 8 C 1.39551 * 119.95498 * 359.74430 * 7 5 4 9 9 C 1.47865 * 120.11367 * 180.02562 * 8 7 5 10 10 O 1.21551 * 119.99488 * 320.87875 * 9 8 7 11 11 N 1.34769 * 119.99800 * 140.88286 * 9 8 7 12 12 C 1.46504 * 120.00424 * 4.91202 * 11 9 8 13 13 C 1.46499 * 119.99701 * 184.91569 * 11 9 8 14 14 H 1.08998 * 110.64728 * 1.68711 * 13 11 9 15 15 C 1.55158 * 110.72185 * 125.02189 * 13 11 9 16 16 C 1.54908 * 101.58367 * 153.86248 * 15 13 11 17 17 N 1.47421 * 104.83365 * 322.99260 * 16 15 13 18 18 C 1.36940 * 125.64912 * 204.09337 * 17 16 15 19 19 H 1.08010 * 119.99823 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99987 * 0.03729 * 18 17 16 21 21 N 1.31617 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47059 * 90.00250 * 22 20 18 24 24 H 1.48499 * 109.46653 * 210.00338 * 22 20 18 25 25 H 1.48500 * 109.46799 * 329.99728 * 22 20 18 26 26 C 1.47024 * 108.70267 * 24.12607 * 17 16 15 27 27 C 1.38456 * 119.97628 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47222 * 59.99657 * 1 2 3 30 30 H 1.08993 * 109.47019 * 299.99243 * 1 2 3 31 31 H 1.08006 * 119.88652 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.02199 * 179.72406 * 7 5 4 33 33 H 1.09000 * 109.46607 * 85.12295 * 12 11 9 34 34 H 1.08997 * 109.46871 * 205.12494 * 12 11 9 35 35 H 1.08992 * 109.46629 * 325.12337 * 12 11 9 36 36 H 1.09000 * 111.00471 * 271.93905 * 15 13 11 37 37 H 1.08997 * 111.00530 * 35.79403 * 15 13 11 38 38 H 1.09000 * 110.37452 * 204.15221 * 16 15 13 39 39 H 1.09010 * 110.45909 * 81.87427 * 16 15 13 40 40 H 0.97004 * 119.99806 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.88444 * 239.52547 * 26 17 16 42 42 H 1.09003 * 109.88159 * 118.36374 * 26 17 16 43 43 H 1.08002 * 120.08902 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3750 -0.0056 5 6 1.9121 3.6105 -0.0007 6 17 0.9580 5.0607 -0.0011 7 6 3.2909 3.6931 -0.0007 8 6 4.0588 2.5278 -0.0004 9 6 5.5350 2.6121 0.0002 10 8 6.0953 3.4621 -0.6639 11 7 6.2591 1.7465 0.7369 12 6 5.5915 0.6556 1.4515 13 6 7.7138 1.8966 0.8232 14 1 8.0442 2.7700 0.2611 15 6 8.1695 1.9873 2.3036 16 6 9.6232 1.4597 2.2145 17 7 9.5736 0.3850 1.2067 18 6 10.4522 -0.6611 1.1115 19 1 10.3297 -1.4001 0.3334 20 6 11.5001 -0.7717 2.0151 21 7 11.6495 0.1290 2.9631 22 14 12.6991 -2.1983 1.8847 23 1 13.8294 -1.8157 1.0010 24 1 13.2180 -2.5336 3.2351 25 1 12.0028 -3.3795 1.3146 26 6 8.4249 0.6226 0.3203 27 6 3.4287 1.2829 0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5137 0.8900 31 1 0.2110 2.3159 -0.0096 32 1 3.7744 4.6588 -0.0014 33 1 5.4597 -0.1920 0.7790 34 1 6.2008 0.3527 2.3030 35 1 4.6175 0.9948 1.8040 36 1 8.1490 3.0185 2.6562 37 1 7.5596 1.3463 2.9401 38 1 9.9422 1.0619 3.1779 39 1 10.2972 2.2528 1.8904 40 1 12.3816 0.0515 3.5948 41 1 7.7413 -0.2252 0.3640 42 1 8.7706 0.7703 -0.7029 43 1 4.0180 0.3778 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033521388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:39 Heat of formation + Delta-G solvation = -3.968397 kcal Electronic energy + Delta-G solvation = -26851.627923 eV Core-core repulsion = 22924.848036 eV Total energy + Delta-G solvation = -3926.779887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94593 -39.76537 -37.97821 -37.27952 -36.52836 -34.94371 -32.42107 -31.26223 -30.69807 -29.21565 -27.91796 -27.45854 -26.78101 -24.74453 -23.60097 -22.91450 -20.79752 -20.23426 -19.25185 -18.20539 -17.26665 -17.00900 -16.66367 -16.47400 -16.20842 -15.92212 -15.34546 -14.73587 -14.60267 -14.32077 -14.11631 -13.93230 -13.65209 -13.22723 -13.00340 -12.76531 -12.50737 -12.38184 -12.30731 -12.07274 -11.86435 -11.61141 -11.48598 -11.38371 -11.16204 -11.04137 -10.86514 -10.82412 -10.45300 -10.13018 -9.86329 -9.83247 -9.56851 -9.26295 -8.69622 -8.67186 -8.42287 -6.86851 -5.67550 -3.09827 0.44283 0.84559 1.65632 2.55780 2.78186 3.00316 3.35970 3.39472 3.44581 3.46203 4.20459 4.42633 4.48204 4.61247 4.66140 4.71607 4.80286 4.82437 5.03421 5.14341 5.20142 5.33514 5.40220 5.50759 5.55473 5.61212 5.68921 5.72249 5.74787 5.86679 5.91047 6.03237 6.17822 6.34594 6.52300 6.54200 6.67171 6.83932 6.92800 7.43971 7.50265 7.60226 7.81743 8.14568 8.32745 9.19214 9.79774 10.43700 11.36281 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.002484 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.113492 B =11269.879181 C =12221.274591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.135 3.865 4 C -0.185 4.185 5 C -0.002 4.002 6 Cl -0.061 7.061 7 C -0.095 4.095 8 C -0.069 4.069 9 C 0.558 3.442 10 O -0.531 6.531 11 N -0.590 5.590 12 C 0.067 3.933 13 C 0.125 3.875 14 H 0.105 0.895 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.130 3.870 27 C -0.122 4.122 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.016 0.984 40 H 0.253 0.747 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.704 3.729 -2.973 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.089 3.911 4 C -0.204 4.204 5 C -0.029 4.029 6 Cl -0.032 7.032 7 C -0.114 4.114 8 C -0.073 4.073 9 C 0.345 3.655 10 O -0.408 6.408 11 N -0.321 5.321 12 C -0.076 4.076 13 C 0.022 3.978 14 H 0.123 0.877 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.746 3.254 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.003 3.997 27 C -0.141 4.141 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.202 4.008 -3.212 25.720 hybrid contribution 0.177 -0.483 -0.117 0.527 sum -25.025 3.525 -3.328 25.490 Atomic orbital electron populations 1.23145 0.77905 1.04470 1.01569 1.86142 1.21730 1.25750 1.88497 1.18641 0.91761 0.84120 0.96564 1.21214 1.00905 0.90575 1.07735 1.20434 0.91492 0.87569 1.03406 1.98386 1.71700 1.36268 1.96806 1.20972 0.91041 0.99220 1.00214 1.19656 0.93683 0.92686 1.01244 1.18086 0.85942 0.81594 0.79895 1.90802 1.71888 1.36409 1.41709 1.47767 1.07901 1.28740 1.47656 1.22181 0.98147 0.89449 0.97817 1.22342 0.76688 1.00156 0.98565 0.87660 1.23418 1.01036 1.00593 0.94167 1.21945 0.88675 0.89442 0.97129 1.44436 1.29141 1.27339 1.31968 1.19069 1.04073 1.00506 1.11382 0.90449 1.24791 0.98890 0.98890 0.98029 1.69778 1.32719 1.35413 1.19174 0.86059 0.81033 0.81463 0.76854 1.21600 1.21644 1.20695 1.21514 0.90276 0.93762 0.94138 1.21081 0.91812 0.98690 1.02499 0.87763 0.92402 0.92340 0.84046 0.83712 0.92012 0.89594 0.90861 0.91918 0.91506 0.87231 0.96641 0.93667 0.95390 0.95588 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.68 10.49 -19.46 -0.20 -2.89 16 3 C 0.13 1.29 6.68 -39.28 -0.26 1.03 16 4 C -0.18 -1.61 8.81 -39.32 -0.35 -1.96 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 7 C -0.09 -1.10 9.41 -39.13 -0.37 -1.47 16 8 C -0.07 -0.86 5.24 -104.99 -0.55 -1.41 16 9 C 0.56 8.71 7.35 -12.32 -0.09 8.62 16 10 O -0.53 -10.07 16.29 5.32 0.09 -9.99 16 11 N -0.59 -9.03 2.88 -172.94 -0.50 -9.53 16 12 C 0.07 0.81 7.64 59.85 0.46 1.27 16 13 C 0.13 2.31 3.35 -66.10 -0.22 2.08 16 14 H 0.11 2.08 7.01 -51.93 -0.36 1.72 16 15 C -0.15 -2.86 6.59 -24.58 -0.16 -3.02 16 16 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 17 N -0.60 -15.26 3.39 -170.06 -0.58 -15.84 16 18 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 19 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.52 10.09 55.49 0.56 -25.96 16 22 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.13 2.74 6.88 -3.06 -0.02 2.72 16 27 C -0.12 -1.31 7.51 -39.02 -0.29 -1.60 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.23 7.64 -51.93 -0.40 -0.17 16 30 H 0.06 0.22 7.67 -51.93 -0.40 -0.17 16 31 H 0.14 0.90 6.28 -52.48 -0.33 0.57 16 32 H 0.15 1.69 8.05 -52.49 -0.42 1.26 16 33 H 0.06 0.69 6.78 -51.93 -0.35 0.33 16 34 H 0.09 1.12 6.12 -51.93 -0.32 0.81 16 35 H 0.07 0.75 5.84 -51.93 -0.30 0.44 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.18 6.14 -51.93 -0.32 0.86 16 38 H 0.11 2.92 5.87 -51.93 -0.31 2.61 16 39 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.03 0.57 7.05 -51.93 -0.37 0.20 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.15 1.55 5.28 -52.49 -0.28 1.27 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -31.83 358.65 -8.52 -40.35 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.39 Total: -0.43 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.38 Total: 4.09 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.52 Total: -51.33 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.12 Total: -12.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.83 -8.52 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033521388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.381 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds