Wall clock time and date at job start Tue Mar 31 2020 20:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35677 * 116.99987 * 2 1 4 4 C 1.38697 * 120.13782 * 0.22340 * 3 2 1 5 5 C 1.38049 * 120.10142 * 180.28266 * 4 3 2 6 6 C 1.38650 * 120.37389 * 359.74115 * 5 4 3 7 7 Cl 1.73600 * 119.85998 * 180.02562 * 6 5 4 8 8 C 1.37890 * 120.27513 * 0.02562 * 6 5 4 9 9 C 1.39715 * 119.89349 * 359.97438 * 8 6 5 10 10 C 1.47533 * 120.18200 * 179.97438 * 9 8 6 11 11 O 1.21595 * 119.99332 * 228.67046 * 10 9 8 12 12 N 1.34770 * 120.00354 * 48.67064 * 10 9 8 13 13 C 1.46497 * 120.00232 * 355.38752 * 12 10 9 14 14 C 1.46502 * 120.00249 * 175.38129 * 12 10 9 15 15 H 1.09010 * 110.64085 * 1.69109 * 14 12 10 16 16 C 1.55157 * 110.72109 * 125.02451 * 14 12 10 17 17 C 1.55128 * 101.48669 * 82.69970 * 16 14 12 18 18 N 1.47425 * 104.71814 * 37.29297 * 17 16 14 19 19 C 1.36946 * 125.64374 * 155.81791 * 18 17 16 20 20 H 1.07996 * 119.99678 * 190.30993 * 19 18 17 21 21 C 1.38816 * 120.00047 * 10.30579 * 19 18 17 22 22 N 1.31617 * 119.99483 * 33.99534 * 21 19 18 23 23 Si 1.86792 * 120.00131 * 213.99160 * 21 19 18 24 24 H 1.48500 * 109.47262 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47359 * 300.00382 * 23 21 19 26 26 H 1.48497 * 109.47085 * 60.00363 * 23 21 19 27 27 C 1.47022 * 108.70683 * 335.55584 * 18 17 16 28 28 H 1.08999 * 109.47525 * 300.01158 * 1 2 3 29 29 H 1.09005 * 109.46907 * 60.00580 * 1 2 3 30 30 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.94973 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.81716 * 179.72625 * 5 4 3 33 33 H 1.08004 * 120.05220 * 180.02562 * 8 6 5 34 34 H 1.09005 * 109.46786 * 268.19350 * 13 12 10 35 35 H 1.08997 * 109.46855 * 28.18719 * 13 12 10 36 36 H 1.08997 * 109.47608 * 148.18642 * 13 12 10 37 37 H 1.09002 * 111.00620 * 200.94196 * 16 14 12 38 38 H 1.09002 * 111.00057 * 324.75179 * 16 14 12 39 39 H 1.09006 * 110.49394 * 278.45673 * 17 16 14 40 40 H 1.08992 * 110.34306 * 156.05766 * 17 16 14 41 41 H 0.96998 * 120.00850 * 358.81510 * 22 21 19 42 42 H 1.09000 * 109.88106 * 120.70605 * 27 18 17 43 43 H 1.09002 * 109.87892 * 241.86426 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0047 5 6 1.9198 3.6035 -0.0012 6 6 3.3039 3.6843 -0.0064 7 17 4.0791 5.2376 -0.0131 8 6 4.0673 2.5360 -0.0063 9 6 3.4440 1.2855 -0.0004 10 6 4.2546 0.0528 -0.0008 11 8 4.0039 -0.8392 -0.7882 12 7 5.2727 -0.0846 0.8715 13 6 5.6391 1.0282 1.7509 14 6 6.0129 -1.3470 0.9405 15 1 5.6343 -2.0553 0.2034 16 6 7.5326 -1.1038 0.7436 17 6 7.9667 -0.6882 2.1738 18 7 7.1597 -1.5349 3.0711 19 6 7.4890 -1.8771 4.3556 20 1 6.9199 -2.6334 4.8756 21 6 8.5543 -1.2519 4.9890 22 7 8.8207 0.0119 4.7355 23 14 9.6095 -2.2040 6.2011 24 1 10.6727 -1.3160 6.7360 25 1 8.7622 -2.6902 7.3196 26 1 10.2320 -3.3627 5.5118 27 6 5.9398 -1.9460 2.3608 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2137 2.3190 0.0087 32 1 1.3292 4.5078 -0.0020 33 1 5.1452 2.6030 -0.0100 34 1 6.4094 1.6320 1.2710 35 1 4.7608 1.6448 1.9419 36 1 6.0198 0.6361 2.6940 37 1 8.0369 -2.0173 0.4285 38 1 7.7101 -0.2968 0.0327 39 1 7.7480 0.3654 2.3480 40 1 9.0287 -0.8853 2.3197 41 1 8.2835 0.5015 4.0933 42 1 5.8933 -3.0334 2.3027 43 1 5.0615 -1.5626 2.8802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033636795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:07 Heat of formation + Delta-G solvation = -7.148282 kcal Electronic energy + Delta-G solvation = -27726.494118 eV Core-core repulsion = 23799.576341 eV Total energy + Delta-G solvation = -3926.917777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94481 -39.51634 -37.98306 -37.47115 -36.36511 -34.56175 -32.59281 -31.39288 -30.30152 -29.15061 -28.20304 -27.55756 -26.31199 -24.55008 -23.70399 -22.55089 -21.06046 -20.20897 -19.15540 -18.20738 -17.62382 -17.36101 -16.84453 -16.39110 -15.97285 -15.61637 -14.99494 -14.80734 -14.45175 -14.12850 -14.05739 -13.69062 -13.60583 -13.18798 -13.04489 -12.80738 -12.62943 -12.24305 -12.19677 -12.05373 -11.93495 -11.72704 -11.60146 -11.20189 -11.04371 -10.93174 -10.81274 -10.56460 -10.42724 -10.24970 -9.99601 -9.68371 -9.64692 -9.31881 -8.48588 -8.34191 -8.27527 -6.95155 -6.21450 -3.07458 0.60970 0.87423 1.87660 2.71142 2.92083 3.06933 3.41178 3.49951 3.55453 3.72406 4.26124 4.37724 4.57567 4.61986 4.73413 4.85109 4.86336 5.04954 5.20199 5.21171 5.24028 5.30920 5.37244 5.45342 5.49804 5.60856 5.68861 5.74531 5.77341 5.82241 6.06431 6.10149 6.12521 6.17256 6.37338 6.45390 6.62236 6.87975 6.96880 6.98473 7.01684 7.59679 7.78309 8.30809 8.48807 8.98962 9.82233 10.37097 11.19029 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.003360 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.051097 B = 8330.948173 C = 9425.763157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.292 6.292 3 C 0.181 3.819 4 C -0.205 4.205 5 C -0.050 4.050 6 C -0.080 4.080 7 Cl -0.065 7.065 8 C -0.038 4.038 9 C -0.145 4.145 10 C 0.566 3.434 11 O -0.530 6.530 12 N -0.588 5.588 13 C 0.065 3.935 14 C 0.128 3.872 15 H 0.104 0.896 16 C -0.145 4.145 17 C 0.136 3.864 18 N -0.602 5.602 19 C -0.346 4.346 20 H 0.067 0.933 21 C -0.022 4.022 22 N -0.910 5.910 23 Si 1.064 2.936 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.129 3.871 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.051 0.949 41 H 0.267 0.733 42 H 0.036 0.964 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 8.249 -11.371 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.203 6.203 3 C 0.133 3.867 4 C -0.224 4.224 5 C -0.069 4.069 6 C -0.107 4.107 7 Cl -0.036 7.036 8 C -0.058 4.058 9 C -0.149 4.149 10 C 0.353 3.647 11 O -0.407 6.407 12 N -0.320 5.320 13 C -0.078 4.078 14 C 0.024 3.976 15 H 0.122 0.878 16 C -0.184 4.184 17 C 0.010 3.990 18 N -0.329 5.329 19 C -0.474 4.474 20 H 0.085 0.915 21 C -0.224 4.224 22 N -0.551 5.551 23 Si 0.894 3.106 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.222 1.222 27 C 0.002 3.998 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -14.301 7.768 -10.618 19.433 hybrid contribution -1.557 0.287 -0.893 1.817 sum -15.858 8.055 -11.511 21.187 Atomic orbital electron populations 1.23185 0.77977 1.04632 1.01372 1.86248 1.21539 1.25655 1.86878 1.18981 0.90724 0.85003 0.92000 1.21141 1.00567 0.91146 1.09534 1.20947 0.92354 0.98119 0.95497 1.20598 0.92869 0.86896 1.10350 1.98379 1.81115 1.26912 1.97207 1.21173 1.00900 0.89000 0.94687 1.19171 0.90992 0.94070 1.10717 1.17867 0.79916 0.86024 0.80846 1.90771 1.69202 1.41786 1.38927 1.47699 1.32125 1.15018 1.37170 1.22260 1.00183 0.89069 0.96272 1.22149 0.91939 0.84685 0.98799 0.87760 1.23192 0.94508 1.01666 0.99055 1.21790 0.96207 0.94364 0.86614 1.44613 1.17887 1.59291 1.11159 1.19680 1.16788 1.20822 0.90067 0.91488 1.25658 0.98915 0.95758 1.02117 1.70865 1.45844 1.05775 1.32620 0.83504 0.76627 0.75282 0.75202 1.21193 1.22085 1.22204 1.21627 0.90883 0.97192 0.90086 0.92340 0.92319 0.87748 0.83911 0.84258 0.83402 0.92520 0.91568 0.88235 0.90427 0.91507 0.94985 0.93027 0.92115 0.94587 0.95426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.29 -3.88 9.52 -28.69 -0.27 -4.15 16 3 C 0.18 2.31 6.67 -38.71 -0.26 2.06 16 4 C -0.20 -1.92 9.03 -39.48 -0.36 -2.28 16 5 C -0.05 -0.45 9.81 -39.50 -0.39 -0.84 16 6 C -0.08 -0.86 6.31 -39.56 -0.25 -1.11 16 7 Cl -0.06 -0.65 28.94 -51.86 -1.50 -2.16 16 8 C -0.04 -0.47 7.39 -39.16 -0.29 -0.76 16 9 C -0.15 -2.08 4.92 -104.85 -0.52 -2.59 16 10 C 0.57 9.77 6.96 -12.47 -0.09 9.68 16 11 O -0.53 -10.61 15.88 -4.68 -0.07 -10.69 16 12 N -0.59 -10.09 2.82 -173.07 -0.49 -10.58 16 13 C 0.06 1.04 7.13 59.85 0.43 1.47 16 14 C 0.13 2.36 3.58 -66.10 -0.24 2.12 16 15 H 0.10 1.93 7.00 -51.92 -0.36 1.57 16 16 C -0.14 -2.64 6.54 -24.46 -0.16 -2.80 16 17 C 0.14 3.02 4.39 -2.41 -0.01 3.01 16 18 N -0.60 -14.87 2.92 -169.94 -0.50 -15.37 16 19 C -0.35 -9.65 9.99 -15.05 -0.15 -9.80 16 20 H 0.07 1.89 8.02 -52.49 -0.42 1.47 16 21 C -0.02 -0.63 4.96 -17.43 -0.09 -0.71 16 22 N -0.91 -26.63 13.00 55.49 0.72 -25.91 16 23 Si 1.06 25.19 30.03 -169.99 -5.10 20.09 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.75 6.23 -3.07 -0.02 2.73 16 28 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.14 0.91 6.30 -52.49 -0.33 0.58 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.15 1.71 6.48 -52.48 -0.34 1.37 16 34 H 0.06 0.82 7.25 -51.93 -0.38 0.44 16 35 H 0.07 0.95 5.74 -51.93 -0.30 0.65 16 36 H 0.10 1.95 5.32 -51.93 -0.28 1.68 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.73 4.31 -51.93 -0.22 0.50 16 40 H 0.05 1.28 7.73 -51.93 -0.40 0.88 16 41 H 0.27 7.69 6.00 -40.82 -0.24 7.45 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -33.16 356.30 -8.63 -41.80 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.40 Total: 0.26 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.39 Total: 1.34 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.26 Total: -51.86 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.35 Total: -14.84 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.10 Total: 20.09 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.16 -8.63 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033636795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.649 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds