Wall clock time and date at job start Tue Mar 31 2020 20:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35677 * 116.99987 * 2 1 4 4 C 1.38697 * 120.13782 * 0.22340 * 3 2 1 5 5 C 1.38049 * 120.10142 * 180.28266 * 4 3 2 6 6 C 1.38650 * 120.37389 * 359.74115 * 5 4 3 7 7 Cl 1.73600 * 119.85998 * 180.02562 * 6 5 4 8 8 C 1.37890 * 120.27513 * 0.02562 * 6 5 4 9 9 C 1.39715 * 119.89349 * 359.97438 * 8 6 5 10 10 C 1.47533 * 120.18200 * 179.97438 * 9 8 6 11 11 O 1.21595 * 119.99332 * 228.67046 * 10 9 8 12 12 N 1.34770 * 120.00354 * 48.67064 * 10 9 8 13 13 C 1.46497 * 120.00232 * 355.38752 * 12 10 9 14 14 C 1.46502 * 120.00249 * 175.38129 * 12 10 9 15 15 H 1.09010 * 110.64085 * 1.69109 * 14 12 10 16 16 C 1.55157 * 110.72109 * 125.02451 * 14 12 10 17 17 C 1.55128 * 101.48669 * 82.69970 * 16 14 12 18 18 N 1.47425 * 104.71814 * 37.29297 * 17 16 14 19 19 C 1.36946 * 125.64374 * 155.81791 * 18 17 16 20 20 H 1.07996 * 119.99678 * 190.30993 * 19 18 17 21 21 C 1.38816 * 120.00047 * 10.30579 * 19 18 17 22 22 N 1.31617 * 119.99483 * 33.99534 * 21 19 18 23 23 Si 1.86792 * 120.00131 * 213.99160 * 21 19 18 24 24 H 1.48500 * 109.47262 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47359 * 300.00382 * 23 21 19 26 26 H 1.48497 * 109.47085 * 60.00363 * 23 21 19 27 27 C 1.47022 * 108.70683 * 335.55584 * 18 17 16 28 28 H 1.08999 * 109.47525 * 300.01158 * 1 2 3 29 29 H 1.09005 * 109.46907 * 60.00580 * 1 2 3 30 30 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.94973 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.81716 * 179.72625 * 5 4 3 33 33 H 1.08004 * 120.05220 * 180.02562 * 8 6 5 34 34 H 1.09005 * 109.46786 * 268.19350 * 13 12 10 35 35 H 1.08997 * 109.46855 * 28.18719 * 13 12 10 36 36 H 1.08997 * 109.47608 * 148.18642 * 13 12 10 37 37 H 1.09002 * 111.00620 * 200.94196 * 16 14 12 38 38 H 1.09002 * 111.00057 * 324.75179 * 16 14 12 39 39 H 1.09006 * 110.49394 * 278.45673 * 17 16 14 40 40 H 1.08992 * 110.34306 * 156.05766 * 17 16 14 41 41 H 0.96998 * 120.00850 * 358.81510 * 22 21 19 42 42 H 1.09000 * 109.88106 * 120.70605 * 27 18 17 43 43 H 1.09002 * 109.87892 * 241.86426 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2923 2.3739 0.0047 5 6 1.9198 3.6035 -0.0012 6 6 3.3039 3.6843 -0.0064 7 17 4.0791 5.2376 -0.0131 8 6 4.0673 2.5360 -0.0063 9 6 3.4440 1.2855 -0.0004 10 6 4.2546 0.0528 -0.0008 11 8 4.0039 -0.8392 -0.7882 12 7 5.2727 -0.0846 0.8715 13 6 5.6391 1.0282 1.7509 14 6 6.0129 -1.3470 0.9405 15 1 5.6343 -2.0553 0.2034 16 6 7.5326 -1.1038 0.7436 17 6 7.9667 -0.6882 2.1738 18 7 7.1597 -1.5349 3.0711 19 6 7.4890 -1.8771 4.3556 20 1 6.9199 -2.6334 4.8756 21 6 8.5543 -1.2519 4.9890 22 7 8.8207 0.0119 4.7355 23 14 9.6095 -2.2040 6.2011 24 1 10.6727 -1.3160 6.7360 25 1 8.7622 -2.6902 7.3196 26 1 10.2320 -3.3627 5.5118 27 6 5.9398 -1.9460 2.3608 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 0.2137 2.3190 0.0087 32 1 1.3292 4.5078 -0.0020 33 1 5.1452 2.6030 -0.0100 34 1 6.4094 1.6320 1.2710 35 1 4.7608 1.6448 1.9419 36 1 6.0198 0.6361 2.6940 37 1 8.0369 -2.0173 0.4285 38 1 7.7101 -0.2968 0.0327 39 1 7.7480 0.3654 2.3480 40 1 9.0287 -0.8853 2.3197 41 1 8.2835 0.5015 4.0933 42 1 5.8933 -3.0334 2.3027 43 1 5.0615 -1.5626 2.8802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033636795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:06 Heat of formation + Delta-G solvation = -26.717379 kcal Electronic energy + Delta-G solvation = -27727.342698 eV Core-core repulsion = 23799.576341 eV Total energy + Delta-G solvation = -3927.766357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00465 -40.74793 -39.12982 -38.73915 -37.19369 -36.16531 -34.30136 -32.55245 -31.12598 -30.93837 -29.79153 -28.24975 -27.76870 -26.28600 -25.00204 -23.39350 -22.31552 -22.09005 -20.49368 -19.63862 -19.13438 -18.57391 -17.89460 -17.53365 -16.83024 -16.66260 -16.34546 -16.20443 -15.83665 -15.60273 -15.31774 -15.08746 -14.93546 -14.45202 -14.33199 -14.18691 -13.66253 -13.58689 -13.52438 -13.37588 -12.97473 -12.87000 -12.70432 -12.57629 -12.47029 -12.36724 -12.15830 -12.01348 -11.96533 -11.84522 -11.69598 -11.65253 -10.98062 -10.38568 -10.23919 -9.81406 -9.28777 -8.99145 -8.42705 -5.24289 -0.27060 0.04227 1.06101 1.49956 1.58676 1.66381 1.82803 1.85694 2.18158 2.43611 2.62480 3.17808 3.25023 3.49754 3.59832 3.68142 3.79681 3.86715 3.96811 4.10231 4.14132 4.21515 4.29183 4.36309 4.40514 4.43860 4.46768 4.59110 4.62175 4.71709 4.74080 4.76548 4.88084 4.93498 4.99111 5.01748 5.06798 5.22934 5.33947 5.46287 5.67398 6.17616 6.28793 6.34026 6.89337 6.97240 7.72349 8.30110 8.99327 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.003360 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.051097 B = 8330.948173 C = 9425.763157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.169 3.831 4 C -0.192 4.192 5 C -0.037 4.037 6 C -0.085 4.085 7 Cl -0.060 7.060 8 C -0.042 4.042 9 C -0.177 4.177 10 C 0.568 3.432 11 O -0.564 6.564 12 N -0.590 5.590 13 C 0.076 3.924 14 C 0.138 3.862 15 H 0.108 0.892 16 C -0.128 4.128 17 C 0.141 3.859 18 N -0.618 5.618 19 C -0.360 4.360 20 H 0.056 0.944 21 C -0.067 4.067 22 N -0.933 5.933 23 Si 1.113 2.887 24 H -0.290 1.290 25 H -0.278 1.278 26 H -0.284 1.284 27 C 0.131 3.869 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.259 0.741 42 H 0.036 0.964 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.262 9.504 -12.061 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.121 3.879 4 C -0.211 4.211 5 C -0.055 4.055 6 C -0.112 4.112 7 Cl -0.031 7.031 8 C -0.061 4.061 9 C -0.181 4.181 10 C 0.357 3.643 11 O -0.444 6.444 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.034 3.966 15 H 0.126 0.874 16 C -0.167 4.167 17 C 0.016 3.984 18 N -0.346 5.346 19 C -0.488 4.488 20 H 0.074 0.926 21 C -0.265 4.265 22 N -0.576 5.576 23 Si 0.938 3.062 24 H -0.216 1.216 25 H -0.204 1.204 26 H -0.211 1.211 27 C 0.005 3.995 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.196 0.804 32 H 0.191 0.809 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -15.952 9.031 -11.322 21.546 hybrid contribution -1.190 -0.062 -0.695 1.379 sum -17.142 8.970 -12.016 22.775 Atomic orbital electron populations 1.23509 0.75478 1.05869 1.03239 1.86199 1.24329 1.26517 1.86971 1.19233 0.90450 0.86049 0.92196 1.21490 1.02077 0.89836 1.07692 1.21367 0.91818 0.99284 0.93043 1.20708 0.93639 0.86598 1.10281 1.98384 1.81234 1.26293 1.97179 1.21132 1.01051 0.88927 0.95010 1.19036 0.91675 0.93183 1.14169 1.18336 0.79365 0.86741 0.79838 1.90734 1.69931 1.43454 1.40263 1.47719 1.32314 1.14636 1.37489 1.22156 1.01295 0.88781 0.94418 1.21922 0.92378 0.85568 0.96695 0.87411 1.23095 0.93977 1.02846 0.96798 1.21726 0.94119 0.93958 0.88557 1.44774 1.19408 1.59591 1.10784 1.19875 1.17049 1.20311 0.91530 0.92569 1.26930 0.99814 0.95842 1.03903 1.70955 1.46389 1.06631 1.33587 0.82845 0.75180 0.74164 0.73964 1.21572 1.20357 1.21098 1.21652 0.89179 0.97211 0.91472 0.90471 0.90271 0.87086 0.80423 0.80949 0.83504 0.90864 0.89850 0.91938 0.89476 0.89179 0.95193 0.96067 0.92999 0.94605 0.96826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -8.42 9.52 -80.42 -0.77 -9.19 16 3 C 0.17 4.07 6.67 22.84 0.15 4.22 16 4 C -0.19 -2.97 9.03 22.33 0.20 -2.77 16 5 C -0.04 -0.53 9.81 22.32 0.22 -0.31 16 6 C -0.09 -1.62 6.31 22.29 0.14 -1.48 16 7 Cl -0.06 -1.07 28.94 -2.72 -0.08 -1.15 16 8 C -0.04 -0.97 7.39 22.54 0.17 -0.81 16 9 C -0.18 -4.93 4.92 -20.01 -0.10 -5.03 16 10 C 0.57 19.69 6.96 86.70 0.60 20.29 16 11 O -0.56 -22.92 15.88 5.51 0.09 -22.83 16 12 N -0.59 -20.40 2.82 -819.72 -2.31 -22.71 16 13 C 0.08 2.46 7.13 127.77 0.91 3.37 16 14 C 0.14 5.16 3.58 46.18 0.17 5.32 16 15 H 0.11 4.00 7.00 -2.38 -0.02 3.99 16 16 C -0.13 -4.62 6.54 32.06 0.21 -4.41 16 17 C 0.14 6.44 4.39 86.93 0.38 6.82 16 18 N -0.62 -31.39 2.92 -691.56 -2.02 -33.41 16 19 C -0.36 -20.53 9.99 84.03 0.84 -19.69 16 20 H 0.06 3.25 8.02 -2.91 -0.02 3.23 16 21 C -0.07 -3.83 4.96 84.86 0.42 -3.41 16 22 N -0.93 -55.75 13.00 21.65 0.28 -55.47 16 23 Si 1.11 51.25 30.03 68.60 2.06 53.31 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 C 0.13 5.75 6.23 86.73 0.54 6.29 16 28 H 0.08 0.72 7.65 -2.39 -0.02 0.70 16 29 H 0.08 0.71 7.67 -2.38 -0.02 0.69 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.18 1.42 6.30 -2.91 -0.02 1.40 16 32 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.15 3.29 6.48 -2.91 -0.02 3.27 16 34 H 0.07 2.09 7.25 -2.38 -0.02 2.08 16 35 H 0.08 2.39 5.74 -2.39 -0.01 2.37 16 36 H 0.06 2.53 5.32 -2.39 -0.01 2.52 16 37 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.03 1.40 4.31 -2.38 -0.01 1.39 16 40 H 0.02 1.08 7.73 -2.39 -0.02 1.06 16 41 H 0.26 15.41 6.00 -92.71 -0.56 14.85 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.01 0.64 8.04 -2.39 -0.02 0.62 16 Total: -1.00 -73.96 356.30 4.47 -69.48 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.26 Total: 12.29 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.97 Total: 9.68 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -4.05 Total: -111.60 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.68 Total: -32.02 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.06 Total: 53.31 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -73.96 4.47 -69.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033636795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.766 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds