Wall clock time and date at job start Tue Mar 31 2020 20:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35742 * 116.99822 * 2 1 4 4 C 1.38969 * 119.91371 * 359.97438 * 3 2 1 5 5 C 1.37710 * 120.09751 * 179.69438 * 4 3 2 6 6 C 1.39732 * 119.93463 * 0.60468 * 5 4 3 7 7 C 1.47611 * 120.08553 * 179.69467 * 6 5 4 8 8 O 1.21582 * 119.99535 * 34.77842 * 7 6 5 9 9 N 1.34774 * 120.00143 * 214.78395 * 7 6 5 10 10 C 1.46506 * 120.00017 * 5.82041 * 9 7 6 11 11 C 1.46496 * 119.99859 * 185.82801 * 9 7 6 12 12 H 1.09001 * 110.89029 * 3.87277 * 11 9 7 13 13 C 1.55162 * 111.00003 * 239.99313 * 11 9 7 14 14 C 1.54324 * 102.94012 * 206.42274 * 13 11 9 15 15 N 1.47013 * 107.27286 * 22.19906 * 14 13 11 16 16 C 1.36938 * 125.65153 * 181.02181 * 15 14 13 17 17 H 1.08004 * 120.00306 * 174.91421 * 16 15 14 18 18 C 1.38820 * 119.99839 * 354.91868 * 16 15 14 19 19 N 1.31620 * 119.99673 * 214.20715 * 18 16 15 20 20 Si 1.86798 * 120.00015 * 34.48039 * 18 16 15 21 21 H 1.48497 * 109.47073 * 173.99561 * 20 18 16 22 22 H 1.48499 * 109.47206 * 293.99615 * 20 18 16 23 23 H 1.48501 * 109.47134 * 53.99615 * 20 18 16 24 24 C 1.47429 * 108.70359 * 1.28290 * 15 14 13 25 25 C 1.39720 * 119.83375 * 359.42146 * 6 5 4 26 26 C 1.37825 * 119.89202 * 0.27556 * 25 6 5 27 27 Cl 1.73600 * 119.96188 * 179.97438 * 26 25 6 28 28 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47451 * 299.99795 * 1 2 3 30 30 H 1.08997 * 109.47152 * 60.00264 * 1 2 3 31 31 H 1.07997 * 119.95116 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.02881 * 180.32125 * 5 4 3 33 33 H 1.08994 * 109.47131 * 274.70085 * 10 9 7 34 34 H 1.09003 * 109.46710 * 34.70052 * 10 9 7 35 35 H 1.09001 * 109.46687 * 154.69322 * 10 9 7 36 36 H 1.09004 * 110.71501 * 88.06581 * 13 11 9 37 37 H 1.08989 * 110.87832 * 324.85948 * 13 11 9 38 38 H 1.09003 * 109.88625 * 262.77598 * 14 13 11 39 39 H 1.09009 * 109.88108 * 141.61705 * 14 13 11 40 40 H 0.96998 * 120.00196 * 5.27988 * 19 18 16 41 41 H 1.08998 * 110.36689 * 94.48632 * 24 15 14 42 42 H 1.09005 * 110.36629 * 216.80751 * 24 15 14 43 43 H 1.07995 * 120.05518 * 180.29796 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2865 2.3738 -0.0005 5 6 1.9077 3.6028 0.0058 6 6 3.3029 3.6790 0.0000 7 6 3.9722 4.9946 0.0000 8 8 3.4795 5.9272 0.6047 9 7 5.1293 5.1620 -0.6704 10 6 5.6572 4.0780 -1.5026 11 6 5.8593 6.4280 -0.5668 12 1 5.3728 7.1004 0.1397 13 6 6.0108 7.0979 -1.9581 14 6 7.2903 7.9454 -1.7961 15 7 8.0623 7.3630 -0.6887 16 6 9.2563 7.8355 -0.2130 17 1 9.7060 7.3855 0.6598 18 6 9.8887 8.8930 -0.8525 19 7 11.2031 8.9409 -0.9019 20 14 8.8743 10.2517 -1.6363 21 1 9.7771 11.3264 -2.1213 22 1 8.1046 9.6983 -2.7793 23 1 7.9348 10.8106 -0.6311 24 6 7.3412 6.1823 -0.1793 25 6 4.0630 2.5066 0.0001 26 6 3.4341 1.2802 0.0000 27 17 4.3767 -0.1776 -0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2082 2.3147 -0.0005 32 1 1.3170 4.5070 0.0106 33 1 6.2409 3.3963 -0.8841 34 1 4.8299 3.5354 -1.9602 35 1 6.2934 4.4959 -2.2829 36 1 5.1523 7.7335 -2.1756 37 1 6.1411 6.3480 -2.7382 38 1 7.0251 8.9762 -1.5613 39 1 7.8763 7.9113 -2.7147 40 1 11.7286 8.2009 -0.5598 41 1 7.7148 5.2754 -0.6547 42 1 7.4433 6.1136 0.9038 43 1 5.1416 2.5613 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033648574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:42 Heat of formation + Delta-G solvation = 3.890794 kcal Electronic energy + Delta-G solvation = -26882.837387 eV Core-core repulsion = 22956.398300 eV Total energy + Delta-G solvation = -3926.439087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98353 -39.94296 -38.03752 -37.35561 -36.59255 -35.12683 -32.49599 -31.40394 -30.94190 -29.42759 -28.22500 -27.91930 -26.96861 -24.37907 -23.24737 -23.07166 -21.13421 -20.49618 -19.37612 -18.65285 -17.73201 -17.45536 -16.86958 -16.47324 -16.31953 -15.53951 -15.33343 -15.13647 -14.72309 -14.54062 -14.03965 -13.67967 -13.65910 -13.37279 -13.29236 -13.09377 -12.87693 -12.58127 -12.52623 -12.10526 -12.01950 -11.95715 -11.59917 -11.47408 -11.35417 -11.22956 -11.05244 -10.98512 -10.56510 -10.01516 -9.95088 -9.69788 -9.36828 -9.08624 -8.70583 -8.52567 -8.32018 -7.12949 -6.38612 -3.13751 0.50204 0.69583 1.78691 2.53345 2.63866 2.89581 3.31554 3.45059 3.57445 3.74383 4.17805 4.26446 4.38150 4.64145 4.66576 4.66666 4.69431 4.90205 4.96759 4.98253 5.04335 5.09961 5.16505 5.24608 5.37348 5.41423 5.45001 5.50393 5.63604 5.66952 5.81311 5.87725 5.92079 6.02933 6.19007 6.38849 6.46517 6.56352 6.68482 6.72609 6.79506 7.36679 7.69273 8.08938 8.32854 9.01121 9.58571 10.24684 11.09305 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.002556 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.927407 B =10953.045214 C =11728.199728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.158 3.842 4 C -0.206 4.206 5 C -0.018 4.018 6 C -0.152 4.152 7 C 0.563 3.437 8 O -0.534 6.534 9 N -0.595 5.595 10 C 0.070 3.930 11 C 0.121 3.879 12 H 0.111 0.889 13 C -0.140 4.140 14 C 0.123 3.877 15 N -0.606 5.606 16 C -0.342 4.342 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.902 5.902 20 Si 1.032 2.968 21 H -0.298 1.298 22 H -0.277 1.277 23 H -0.296 1.296 24 C 0.134 3.866 25 C -0.045 4.045 26 C -0.078 4.078 27 Cl -0.051 7.051 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.265 0.735 41 H 0.031 0.969 42 H 0.045 0.955 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.040 -19.768 -1.548 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.110 3.890 4 C -0.225 4.225 5 C -0.037 4.037 6 C -0.156 4.156 7 C 0.351 3.649 8 O -0.412 6.412 9 N -0.327 5.327 10 C -0.073 4.073 11 C 0.017 3.983 12 H 0.128 0.872 13 C -0.178 4.178 14 C -0.002 4.002 15 N -0.334 5.334 16 C -0.468 4.468 17 H 0.098 0.902 18 C -0.211 4.211 19 N -0.540 5.540 20 Si 0.864 3.136 21 H -0.226 1.226 22 H -0.204 1.204 23 H -0.224 1.224 24 C 0.007 3.993 25 C -0.064 4.064 26 C -0.105 4.105 27 Cl -0.022 7.022 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.899 -18.110 -1.963 29.260 hybrid contribution -0.315 -1.477 0.867 1.742 sum -23.213 -19.588 -1.095 30.393 Atomic orbital electron populations 1.23185 0.77613 1.04552 1.01785 1.86137 1.21930 1.25824 1.87543 1.18922 0.90530 0.85260 0.94267 1.21160 1.00547 0.91186 1.09643 1.21102 0.92961 0.97884 0.91795 1.19778 0.94118 0.92882 1.08803 1.18085 0.80467 0.87302 0.79071 1.90797 1.64365 1.41902 1.44133 1.47680 1.22389 1.15891 1.46729 1.22098 0.99815 0.90005 0.95381 1.22615 0.93282 0.83990 0.98373 0.87151 1.22961 0.98702 0.99525 0.96641 1.21865 0.90527 0.95089 0.92739 1.44767 1.23077 1.28874 1.36724 1.19943 0.94053 1.19027 1.13775 0.90200 1.25586 0.96525 1.00767 0.98186 1.70926 1.05098 1.36297 1.41713 0.84478 0.74999 0.77333 0.76817 1.22568 1.20443 1.22365 1.21814 0.88323 0.91389 0.97772 1.21508 1.01514 0.88961 0.94405 1.20017 0.88773 0.89033 1.12702 1.98383 1.71559 1.35100 1.97127 0.87734 0.92152 0.92165 0.83896 0.84011 0.92034 0.91013 0.89844 0.91121 0.91032 0.95372 0.93655 0.92527 0.95183 0.93626 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.49 9.94 -18.93 -0.19 -2.68 16 3 C 0.16 1.43 6.69 -39.00 -0.26 1.17 16 4 C -0.21 -1.63 9.01 -39.50 -0.36 -1.98 16 5 C -0.02 -0.18 9.60 -39.22 -0.38 -0.55 16 6 C -0.15 -1.73 5.17 -104.96 -0.54 -2.28 16 7 C 0.56 8.17 7.36 -12.44 -0.09 8.08 16 8 O -0.53 -9.61 16.22 5.29 0.09 -9.52 16 9 N -0.60 -8.35 2.91 -172.54 -0.50 -8.85 16 10 C 0.07 0.74 7.44 59.85 0.45 1.19 16 11 C 0.12 2.08 3.45 -65.66 -0.23 1.86 16 12 H 0.11 2.11 7.05 -51.93 -0.37 1.75 16 13 C -0.14 -2.35 6.49 -24.89 -0.16 -2.51 16 14 C 0.12 2.67 4.58 -3.07 -0.01 2.66 16 15 N -0.61 -14.85 3.38 -169.93 -0.57 -15.43 16 16 C -0.34 -9.78 10.39 -15.06 -0.16 -9.93 16 17 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 18 C -0.01 -0.25 5.42 -17.43 -0.09 -0.34 16 19 N -0.90 -27.99 13.70 55.49 0.76 -27.23 16 20 Si 1.03 26.05 25.17 -169.99 -4.28 21.77 16 21 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 22 H -0.28 -6.33 5.09 56.52 0.29 -6.05 16 23 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 24 C 0.13 2.68 6.79 -2.41 -0.02 2.66 16 25 C -0.04 -0.46 7.57 -39.18 -0.30 -0.75 16 26 C -0.08 -0.78 6.32 -39.42 -0.25 -1.03 16 27 Cl -0.05 -0.50 28.49 -51.86 -1.48 -1.98 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.20 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.21 16 31 H 0.14 0.72 6.28 -52.49 -0.33 0.39 16 32 H 0.14 1.28 7.99 -52.48 -0.42 0.86 16 33 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 34 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 35 H 0.08 0.91 6.38 -51.93 -0.33 0.58 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.06 6.46 -51.94 -0.34 0.73 16 38 H 0.03 0.65 4.72 -51.93 -0.25 0.40 16 39 H 0.05 1.03 6.84 -51.92 -0.36 0.67 16 40 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 41 H 0.03 0.57 6.97 -51.93 -0.36 0.21 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.16 1.45 5.22 -52.49 -0.27 1.18 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -34.20 352.52 -7.71 -41.91 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.44 Total: -2.62 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.41 Total: -0.68 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.32 Total: -51.51 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.10 Total: -12.21 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.28 Total: 21.77 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.20 -7.71 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033648574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.799 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds