Wall clock time and date at job start Tue Mar 31 2020 20:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35740 * 117.00000 * 2 1 4 4 C 1.38976 * 119.91659 * 359.97438 * 3 2 1 5 5 C 1.37699 * 120.10176 * 180.02562 * 4 3 2 6 6 C 1.39745 * 119.93646 * 359.97438 * 5 4 3 7 7 C 1.47604 * 120.08265 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00079 * 328.37868 * 7 6 5 9 9 N 1.34776 * 119.99827 * 148.38543 * 7 6 5 10 10 C 1.46500 * 119.99734 * 4.30372 * 9 7 6 11 11 C 1.46493 * 120.00204 * 184.31243 * 9 7 6 12 12 H 1.09009 * 110.63932 * 1.68181 * 11 9 7 13 13 C 1.55153 * 110.72579 * 125.01660 * 11 9 7 14 14 C 1.54911 * 101.58325 * 153.86439 * 13 11 9 15 15 N 1.47422 * 104.83149 * 322.99219 * 14 13 11 16 16 C 1.36938 * 125.64867 * 204.09119 * 15 14 13 17 17 H 1.07994 * 120.00245 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99841 * 0.04100 * 16 15 14 19 19 N 1.31617 * 120.00110 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99938 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47071 * 60.00217 * 20 18 16 22 22 H 1.48501 * 109.47233 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47129 * 300.00201 * 20 18 16 24 24 C 1.47023 * 108.70356 * 24.13142 * 15 14 13 25 25 C 1.39715 * 119.82638 * 0.25413 * 6 5 4 26 26 C 1.37820 * 119.89957 * 359.47075 * 25 6 5 27 27 Cl 1.73604 * 119.96406 * 180.25228 * 26 25 6 28 28 H 1.08996 * 109.47089 * 60.00310 * 1 2 3 29 29 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47466 * 300.00509 * 1 2 3 31 31 H 1.07997 * 119.94210 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.03063 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47326 * 94.30409 * 10 9 7 34 34 H 1.09005 * 109.47266 * 214.30390 * 10 9 7 35 35 H 1.08996 * 109.47884 * 334.30325 * 10 9 7 36 36 H 1.08998 * 111.00902 * 271.94431 * 13 11 9 37 37 H 1.09004 * 111.00242 * 35.78875 * 13 11 9 38 38 H 1.08998 * 110.36486 * 204.15268 * 14 13 11 39 39 H 1.09003 * 110.45834 * 81.87957 * 14 13 11 40 40 H 0.97001 * 120.00283 * 179.97438 * 19 18 16 41 41 H 1.09008 * 109.87776 * 239.51991 * 24 15 14 42 42 H 1.08996 * 109.88431 * 118.35397 * 24 15 14 43 43 H 1.08004 * 120.04680 * 179.72378 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2866 2.3739 -0.0005 5 6 1.9078 3.6028 -0.0011 6 6 3.3031 3.6789 -0.0005 7 6 3.9724 4.9945 -0.0017 8 8 3.4491 5.9423 -0.5550 9 7 5.1635 5.1452 0.6105 10 6 5.8386 3.9838 1.1951 11 6 5.7831 6.4701 0.6916 12 1 5.1400 7.2235 0.2366 13 6 6.1065 6.8359 2.1643 14 6 7.2843 7.8265 1.9874 15 7 8.0615 7.2903 0.8552 16 6 9.3896 7.5238 0.6172 17 1 9.8695 7.0833 -0.2442 18 6 10.1193 8.3265 1.4833 19 7 9.5347 8.8628 2.5335 20 14 11.9309 8.6456 1.1582 21 1 12.0879 9.3071 -0.1619 22 1 12.4771 9.5265 2.2218 23 1 12.6681 7.3566 1.1568 24 6 7.1742 6.4642 0.0235 25 6 4.0630 2.5065 -0.0048 26 6 3.4341 1.2802 0.0015 27 17 4.3767 -0.1777 0.0028 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2082 2.3147 -0.0005 32 1 1.3171 4.5070 -0.0011 33 1 6.5432 3.5714 0.4728 34 1 6.3760 4.2897 2.0929 35 1 5.0993 3.2262 1.4548 36 1 5.2558 7.3217 2.6421 37 1 6.4177 5.9553 2.7263 38 1 7.8963 7.8531 2.8889 39 1 6.9115 8.8237 1.7533 40 1 10.0447 9.4234 3.1390 41 1 7.5568 5.4447 -0.0272 42 1 7.1059 6.8870 -0.9788 43 1 5.1417 2.5612 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033648575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:44 Heat of formation + Delta-G solvation = 6.467383 kcal Electronic energy + Delta-G solvation = -26848.108884 eV Core-core repulsion = 22921.781526 eV Total energy + Delta-G solvation = -3926.327358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95603 -39.84755 -37.84629 -37.18724 -36.52500 -34.97076 -32.37426 -31.32386 -30.75742 -29.15836 -27.96801 -27.60481 -26.69400 -24.67825 -23.39299 -22.98228 -20.75969 -20.23247 -19.22446 -18.50127 -17.64724 -17.03837 -16.69459 -16.34346 -16.19799 -15.33867 -15.14011 -14.81217 -14.53499 -14.44073 -14.13557 -13.89305 -13.60102 -13.33788 -13.11448 -12.82675 -12.61502 -12.42466 -11.91813 -11.86931 -11.83690 -11.57782 -11.54061 -11.29007 -11.14624 -11.04938 -10.84997 -10.79934 -10.43217 -10.15423 -9.84126 -9.77139 -9.56389 -9.25316 -8.67228 -8.63408 -8.37276 -6.86247 -5.66830 -3.09164 0.56807 0.75110 1.84341 2.63528 2.69266 3.03579 3.40284 3.41330 3.44786 3.45995 4.24570 4.33946 4.45552 4.49312 4.68664 4.71868 4.74941 4.96296 5.02780 5.12085 5.27974 5.33681 5.37394 5.46717 5.52362 5.56844 5.69570 5.71198 5.73108 5.89922 5.94048 6.07973 6.19300 6.36008 6.53364 6.55044 6.68348 6.74563 6.94803 7.46041 7.52888 7.60534 7.82337 8.21007 8.33553 9.19843 9.80401 10.44452 11.36915 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022215 B = 0.002490 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.114118 B =11240.890416 C =12075.828949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.157 3.843 4 C -0.207 4.207 5 C -0.017 4.017 6 C -0.152 4.152 7 C 0.560 3.440 8 O -0.539 6.539 9 N -0.591 5.591 10 C 0.056 3.944 11 C 0.126 3.874 12 H 0.105 0.895 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.130 3.870 25 C -0.053 4.053 26 C -0.080 4.080 27 Cl -0.051 7.051 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 -18.516 -2.110 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.110 3.890 4 C -0.226 4.226 5 C -0.036 4.036 6 C -0.156 4.156 7 C 0.348 3.652 8 O -0.417 6.417 9 N -0.322 5.322 10 C -0.087 4.087 11 C 0.023 3.977 12 H 0.123 0.877 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.003 3.997 25 C -0.072 4.072 26 C -0.107 4.107 27 Cl -0.022 7.022 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.671 -18.215 -2.303 26.186 hybrid contribution 0.776 0.124 -0.204 0.812 sum -17.896 -18.091 -2.507 25.570 Atomic orbital electron populations 1.23179 0.77665 1.04503 1.01779 1.86133 1.21892 1.25859 1.87583 1.18926 0.90536 0.85235 0.94315 1.21155 1.00517 0.91195 1.09751 1.21101 0.92967 0.97878 0.91651 1.19809 0.94159 0.92974 1.08643 1.18057 0.80868 0.87514 0.78719 1.90784 1.65184 1.41174 1.44556 1.47736 1.19535 1.09622 1.55349 1.22451 0.97924 0.88485 0.99824 1.22308 0.94723 0.82587 0.98053 0.87698 1.23408 1.00362 1.01174 0.94287 1.21942 0.89101 0.91577 0.94561 1.44425 1.06083 1.56236 1.26112 1.19021 0.83357 1.25039 1.07665 0.90504 1.24789 0.98516 0.99751 0.97535 1.69765 1.34654 1.37235 1.15475 0.86134 0.84362 0.77720 0.77169 1.21191 1.21559 1.21149 1.21514 0.88769 0.95273 0.94176 1.21787 1.01925 0.89059 0.94415 1.20025 0.88759 0.89009 1.12911 1.98380 1.71579 1.35147 1.97142 0.92175 0.87770 0.92174 0.83924 0.83948 0.91754 0.89919 0.89935 0.91976 0.91526 0.87240 0.96674 0.93617 0.95430 0.95623 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.30 -2.64 9.94 -18.93 -0.19 -2.82 16 3 C 0.16 1.52 6.69 -39.00 -0.26 1.26 16 4 C -0.21 -1.76 9.01 -39.50 -0.36 -2.12 16 5 C -0.02 -0.18 9.59 -39.22 -0.38 -0.55 16 6 C -0.15 -1.87 5.47 -104.96 -0.57 -2.44 16 7 C 0.56 8.71 7.43 -12.44 -0.09 8.61 16 8 O -0.54 -10.12 16.12 5.29 0.09 -10.04 16 9 N -0.59 -9.11 2.88 -173.04 -0.50 -9.61 16 10 C 0.06 0.68 7.80 59.85 0.47 1.15 16 11 C 0.13 2.34 3.36 -66.10 -0.22 2.11 16 12 H 0.11 2.09 7.00 -51.92 -0.36 1.73 16 13 C -0.15 -2.88 6.62 -24.58 -0.16 -3.04 16 14 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 15 N -0.60 -15.34 3.39 -170.07 -0.58 -15.92 16 16 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 20 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.13 2.76 6.88 -3.06 -0.02 2.73 16 25 C -0.05 -0.58 7.20 -39.18 -0.28 -0.86 16 26 C -0.08 -0.84 6.33 -39.43 -0.25 -1.09 16 27 Cl -0.05 -0.53 28.49 -51.86 -1.48 -2.01 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 31 H 0.14 0.80 6.28 -52.49 -0.33 0.47 16 32 H 0.14 1.40 7.95 -52.48 -0.42 0.98 16 33 H 0.06 0.74 6.99 -51.93 -0.36 0.38 16 34 H 0.08 1.07 6.07 -51.93 -0.32 0.76 16 35 H 0.08 0.84 4.73 -51.93 -0.25 0.60 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.19 6.07 -51.93 -0.32 0.87 16 38 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.03 0.56 6.83 -51.92 -0.35 0.21 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.16 1.62 4.78 -52.48 -0.25 1.37 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -32.51 356.22 -8.45 -40.96 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.29 Total: -0.62 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.40 Total: 3.82 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.52 Total: -51.59 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.10 Total: -12.86 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.51 -8.45 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033648575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.427 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds