Wall clock time and date at job start Tue Mar 31 2020 20:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35657 * 117.00317 * 2 1 4 4 C 1.38677 * 120.13639 * 0.02562 * 3 2 1 5 5 C 1.38103 * 120.11566 * 179.72301 * 4 3 2 6 6 C 1.38477 * 120.41256 * 0.51736 * 5 4 3 7 7 C 1.37972 * 120.28491 * 359.47894 * 6 5 4 8 8 Cl 1.73601 * 120.06119 * 180.23864 * 7 6 5 9 9 C 1.39834 * 119.87261 * 0.26022 * 7 6 5 10 10 C 1.47463 * 120.20433 * 179.97438 * 9 7 6 11 11 O 1.21595 * 119.99816 * 90.00476 * 10 9 7 12 12 N 1.34778 * 120.00182 * 270.00059 * 10 9 7 13 13 C 1.46500 * 119.99896 * 359.97438 * 12 10 9 14 14 C 1.46494 * 119.99989 * 179.97438 * 12 10 9 15 15 H 1.08995 * 110.64474 * 358.31259 * 14 12 10 16 16 C 1.55164 * 110.71652 * 234.97506 * 14 12 10 17 17 C 1.54906 * 101.58487 * 277.13845 * 16 14 12 18 18 N 1.47426 * 104.83046 * 322.99417 * 17 16 14 19 19 C 1.36941 * 125.64813 * 204.09429 * 18 17 16 20 20 H 1.07993 * 120.00108 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99799 * 0.03641 * 19 18 17 22 22 N 1.31620 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00059 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47041 * 89.99785 * 23 21 19 25 25 H 1.48499 * 109.47028 * 210.00314 * 23 21 19 26 26 H 1.48505 * 109.46831 * 330.00356 * 23 21 19 27 27 C 1.47024 * 108.70562 * 24.12796 * 18 17 16 28 28 H 1.08996 * 109.46838 * 59.99863 * 1 2 3 29 29 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46962 * 300.00217 * 1 2 3 31 31 H 1.07996 * 119.94505 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.79342 * 180.27180 * 5 4 3 33 33 H 1.08002 * 119.85982 * 179.76583 * 6 5 4 34 34 H 1.09004 * 109.47423 * 89.99411 * 13 12 10 35 35 H 1.08995 * 109.47475 * 209.99933 * 13 12 10 36 36 H 1.09003 * 109.47135 * 330.00312 * 13 12 10 37 37 H 1.08996 * 111.00233 * 35.21802 * 16 14 12 38 38 H 1.09008 * 110.99676 * 159.06492 * 16 14 12 39 39 H 1.09002 * 110.36803 * 204.15353 * 17 16 14 40 40 H 1.08998 * 110.45939 * 81.87706 * 17 16 14 41 41 H 0.96996 * 119.99851 * 179.97438 * 22 21 19 42 42 H 1.09004 * 109.88207 * 239.52397 * 27 18 17 43 43 H 1.09001 * 109.88250 * 118.36143 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3736 0.0005 5 6 1.9200 3.6038 0.0063 6 6 3.3023 3.6857 0.0008 7 6 4.0673 2.5375 0.0003 8 17 5.7999 2.6470 -0.0003 9 6 3.4445 1.2856 -0.0001 10 6 4.2550 0.0537 -0.0011 11 8 4.5896 -0.4548 1.0515 12 7 4.6249 -0.5086 -1.1688 13 6 4.2212 0.1037 -2.4370 14 6 5.4306 -1.7321 -1.1698 15 1 5.6677 -2.0370 -0.1506 16 6 6.7246 -1.5365 -2.0035 17 6 6.2100 -1.7947 -3.4417 18 7 5.2193 -2.8771 -3.2993 19 6 4.8426 -3.7490 -4.2858 20 1 4.1048 -4.5105 -4.0806 21 6 5.4092 -3.6542 -5.5495 22 7 6.3089 -2.7266 -5.7993 23 14 4.8948 -4.8431 -6.8954 24 1 3.7422 -4.2774 -7.6416 25 1 6.0309 -5.0573 -7.8273 26 1 4.5023 -6.1396 -6.2870 27 6 4.7021 -2.8650 -1.9231 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2139 2.3186 0.0005 32 1 1.3289 4.5077 0.0111 33 1 3.7837 4.6525 0.0016 34 1 4.9793 0.8209 -2.7519 35 1 4.1156 -0.6705 -3.1970 36 1 3.2684 0.6165 -2.3059 37 1 7.1053 -0.5204 -1.9013 38 1 7.4839 -2.2667 -1.7232 39 1 7.0294 -2.1127 -4.0864 40 1 5.7377 -0.8986 -3.8439 41 1 6.7051 -2.6606 -6.6822 42 1 4.9065 -3.8214 -1.4418 43 1 3.6290 -2.6740 -1.9321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033687532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:47 Heat of formation + Delta-G solvation = -4.270248 kcal Electronic energy + Delta-G solvation = -28103.672356 eV Core-core repulsion = 24176.879380 eV Total energy + Delta-G solvation = -3926.792976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82668 -39.34937 -37.91676 -37.17826 -36.42670 -34.30134 -32.29551 -31.24755 -30.36614 -29.14498 -27.94422 -27.59347 -26.08678 -24.65315 -23.65270 -22.46629 -20.89923 -20.11503 -18.98182 -18.25308 -17.23738 -16.90022 -16.78465 -16.29551 -15.90972 -15.44105 -15.02373 -14.76616 -14.65141 -14.04099 -13.98643 -13.76941 -13.43236 -12.82989 -12.75751 -12.50067 -12.19845 -12.13281 -12.00987 -11.94770 -11.71176 -11.59644 -11.51510 -11.13960 -11.13042 -11.03453 -10.87862 -10.75534 -10.25897 -10.10475 -9.83673 -9.56728 -9.47258 -9.05123 -8.63620 -8.54844 -8.17346 -6.82536 -5.64807 -3.06523 0.70465 0.97712 1.82672 2.78452 3.02116 3.14795 3.39058 3.41029 3.45303 3.47019 4.36449 4.49538 4.56152 4.72182 4.80266 4.90592 4.94851 4.98865 5.22088 5.29469 5.46297 5.49699 5.53709 5.62860 5.76175 5.78340 5.80487 5.93640 5.96322 6.02321 6.16710 6.30048 6.36703 6.43781 6.63132 6.67062 6.77745 7.00370 7.10089 7.50663 7.63696 7.75592 7.87022 8.36459 8.42146 9.22553 9.83084 10.48138 11.38596 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.003701 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.180106 B = 7564.402216 C = 8327.631190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.172 3.828 4 C -0.208 4.208 5 C -0.056 4.056 6 C -0.151 4.151 7 C 0.030 3.970 8 Cl -0.044 7.044 9 C -0.141 4.141 10 C 0.573 3.427 11 O -0.536 6.536 12 N -0.578 5.578 13 C 0.075 3.925 14 C 0.127 3.873 15 H 0.100 0.900 16 C -0.154 4.154 17 C 0.145 3.855 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.128 3.872 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.021 0.979 41 H 0.251 0.749 42 H 0.033 0.967 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 14.603 11.186 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.124 3.876 4 C -0.227 4.227 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.002 3.998 8 Cl -0.015 7.015 9 C -0.146 4.146 10 C 0.359 3.641 11 O -0.414 6.414 12 N -0.308 5.308 13 C -0.068 4.068 14 C 0.023 3.977 15 H 0.118 0.882 16 C -0.193 4.193 17 C 0.021 3.979 18 N -0.329 5.329 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.001 3.999 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.462 14.052 11.496 20.473 hybrid contribution -0.500 -0.316 -0.818 1.010 sum -9.961 13.736 10.677 20.048 Atomic orbital electron populations 1.23174 0.77530 1.04718 1.01411 1.86157 1.21955 1.25791 1.87399 1.18741 0.90087 0.85183 0.93546 1.21280 1.00581 0.91832 1.09039 1.20969 0.93663 0.97425 0.95358 1.20891 0.93636 0.97280 1.05180 1.20611 0.85803 0.92754 1.00600 1.98415 1.08350 1.98330 1.96402 1.19026 0.91320 0.93751 1.10484 1.17720 0.79305 0.82996 0.84114 1.90760 1.56186 1.63327 1.31106 1.47668 1.51464 1.26131 1.05582 1.22031 0.98603 0.99670 0.86470 1.22165 0.91456 0.83559 1.00478 0.88228 1.23344 0.95743 1.00639 0.99594 1.22114 0.94430 0.90261 0.91122 1.44547 1.46514 1.35823 1.06048 1.19070 1.18562 1.08107 0.89170 0.90561 1.24756 0.99291 0.98988 0.97485 1.69801 1.31164 1.35048 1.21013 0.86096 0.77393 0.80346 0.81797 1.21730 1.21702 1.20755 1.21632 0.96203 0.94952 0.87102 0.92183 0.87658 0.92369 0.84311 0.84416 0.84213 0.92759 0.87800 0.92778 0.91994 0.91014 0.87694 0.96078 0.93782 0.94942 0.95409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.12 9.95 -18.67 -0.19 -4.30 16 3 C 0.17 2.27 6.26 -38.70 -0.24 2.03 16 4 C -0.21 -1.98 9.03 -39.47 -0.36 -2.34 16 5 C -0.06 -0.46 10.03 -39.54 -0.40 -0.86 16 6 C -0.15 -1.50 9.81 -39.59 -0.39 -1.88 16 7 C 0.03 0.40 6.35 -39.08 -0.25 0.15 16 8 Cl -0.04 -0.61 28.04 -51.86 -1.45 -2.06 16 9 C -0.14 -2.16 3.93 -104.82 -0.41 -2.57 16 10 C 0.57 10.54 5.70 -12.50 -0.07 10.47 16 11 O -0.54 -11.43 16.47 5.28 0.09 -11.34 16 12 N -0.58 -10.62 2.82 -173.09 -0.49 -11.11 16 13 C 0.08 1.30 8.35 59.85 0.50 1.80 16 14 C 0.13 2.49 3.58 -66.10 -0.24 2.26 16 15 H 0.10 1.98 6.99 -51.93 -0.36 1.62 16 16 C -0.15 -3.05 6.53 -24.58 -0.16 -3.21 16 17 C 0.15 3.43 5.00 -2.53 -0.01 3.42 16 18 N -0.60 -15.13 2.97 -170.07 -0.51 -15.64 16 19 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 23 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.13 2.78 6.24 -3.06 -0.02 2.76 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.14 0.91 6.30 -52.49 -0.33 0.58 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.05 0.90 7.99 -51.93 -0.41 0.48 16 35 H 0.10 2.11 5.19 -51.93 -0.27 1.84 16 36 H 0.05 0.84 6.55 -51.93 -0.34 0.50 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 39 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 40 H 0.02 0.51 5.54 -51.93 -0.29 0.23 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -32.65 360.23 -8.49 -41.14 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.61 Total: 0.10 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.30 Total: 6.67 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.43 Total: -52.43 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.10 Total: -15.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.45 Total: -2.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.65 -8.49 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033687532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.873 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds