Wall clock time and date at job start Tue Mar 31 2020 20:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35658 * 117.00239 * 2 1 4 4 C 1.38678 * 120.13910 * 0.25846 * 3 2 1 5 5 C 1.38099 * 120.11414 * 180.27632 * 4 3 2 6 6 C 1.38475 * 120.41755 * 359.71637 * 5 4 3 7 7 C 1.37968 * 120.28563 * 0.02844 * 6 5 4 8 8 Cl 1.73599 * 120.06601 * 179.97438 * 7 6 5 9 9 C 1.39840 * 119.86798 * 359.97008 * 7 6 5 10 10 C 1.47466 * 120.19984 * 180.02562 * 9 7 6 11 11 O 1.21597 * 119.99624 * 90.00061 * 10 9 7 12 12 N 1.34771 * 119.99879 * 270.00088 * 10 9 7 13 13 C 1.46496 * 120.00154 * 359.97438 * 12 10 9 14 14 C 1.46506 * 120.00088 * 180.02562 * 12 10 9 15 15 H 1.08998 * 110.88042 * 356.11563 * 14 12 10 16 16 C 1.55150 * 111.00568 * 119.99613 * 14 12 10 17 17 C 1.54324 * 102.94104 * 153.57440 * 16 14 12 18 18 N 1.47027 * 107.27252 * 337.81318 * 17 16 14 19 19 C 1.36936 * 125.65096 * 178.92304 * 18 17 16 20 20 H 1.07994 * 120.00017 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99742 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00383 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99909 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47173 * 59.99892 * 23 21 19 25 25 H 1.48504 * 109.47039 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46940 * 299.99867 * 23 21 19 27 27 C 1.47429 * 108.70083 * 358.93466 * 18 17 16 28 28 H 1.08994 * 109.46841 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47113 * 299.99806 * 1 2 3 30 30 H 1.09003 * 109.47089 * 59.99777 * 1 2 3 31 31 H 1.07994 * 119.94123 * 359.97438 * 4 3 2 32 32 H 1.08008 * 119.78544 * 179.69449 * 5 4 3 33 33 H 1.07996 * 119.85801 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.47119 * 89.99845 * 13 12 10 35 35 H 1.08999 * 109.47527 * 210.00013 * 13 12 10 36 36 H 1.08997 * 109.47336 * 330.00293 * 13 12 10 37 37 H 1.08992 * 110.72354 * 271.93806 * 16 14 12 38 38 H 1.09002 * 110.72027 * 35.03889 * 16 14 12 39 39 H 1.09004 * 109.88412 * 97.22270 * 17 16 14 40 40 H 1.08998 * 109.88667 * 218.23611 * 17 16 14 41 41 H 0.97001 * 120.00659 * 180.02562 * 22 21 19 42 42 H 1.09002 * 110.36228 * 265.29309 * 27 18 17 43 43 H 1.08996 * 110.36555 * 142.97453 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3736 0.0054 5 6 1.9200 3.6038 -0.0004 6 6 3.3024 3.6857 -0.0056 7 6 4.0674 2.5375 -0.0058 8 17 5.7999 2.6469 -0.0131 9 6 3.4444 1.2856 0.0000 10 6 4.2550 0.0537 0.0005 11 8 4.5931 -0.4512 1.0538 12 7 4.6211 -0.5125 -1.1665 13 6 4.2133 0.0955 -2.4354 14 6 5.4259 -1.7367 -1.1661 15 1 5.7006 -2.0207 -0.1502 16 6 4.6807 -2.8924 -1.8845 17 6 5.8333 -3.7879 -2.3858 18 7 7.0376 -2.9478 -2.4613 19 6 8.2829 -3.3705 -2.8432 20 1 9.1067 -2.6726 -2.8654 21 6 8.4861 -4.6960 -3.2019 22 7 7.4820 -5.5464 -3.1754 23 14 10.1850 -5.2728 -3.7223 24 1 11.1451 -5.0504 -2.6114 25 1 10.1367 -6.7197 -4.0533 26 1 10.6236 -4.5067 -4.9164 27 6 6.6826 -1.5751 -2.0574 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2140 2.3186 0.0092 32 1 1.3288 4.5077 -0.0011 33 1 3.7837 4.6525 -0.0105 34 1 4.9704 0.8116 -2.7551 35 1 4.1052 -0.6812 -3.1924 36 1 3.2609 0.6088 -2.3029 37 1 4.0464 -3.4362 -1.1846 38 1 4.0931 -2.5119 -2.7200 39 1 5.9967 -4.6079 -1.6866 40 1 5.5926 -4.1843 -3.3722 41 1 7.6241 -6.4728 -3.4256 42 1 6.4509 -0.9698 -2.9338 43 1 7.4959 -1.1248 -1.4885 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033687533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:50 Heat of formation + Delta-G solvation = -9.341590 kcal Electronic energy + Delta-G solvation = -27619.299038 eV Core-core repulsion = 23692.286152 eV Total energy + Delta-G solvation = -3927.012886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90976 -39.33772 -37.96638 -37.13039 -36.49464 -34.69855 -32.30471 -31.38551 -30.45686 -29.14225 -27.77368 -27.45654 -26.57691 -24.72154 -23.68696 -22.55566 -20.83685 -20.06144 -19.10760 -18.39838 -17.32781 -16.95961 -16.84633 -16.36559 -16.00290 -15.53216 -15.06839 -14.76742 -14.58100 -14.14327 -14.05792 -13.81785 -13.50267 -12.92653 -12.85234 -12.64320 -12.36793 -12.29190 -12.17646 -12.09382 -11.93650 -11.69126 -11.65719 -11.22278 -11.18943 -10.91443 -10.78982 -10.70605 -10.25979 -10.09674 -9.79108 -9.70196 -9.61048 -9.14582 -8.64871 -8.57755 -8.27022 -6.79924 -5.67182 -3.01173 0.61146 0.88178 1.76170 2.70647 2.91891 3.04407 3.27341 3.44416 3.48319 3.49726 4.26012 4.45729 4.54698 4.62377 4.71672 4.80223 4.85248 4.89827 5.12480 5.19236 5.27373 5.41157 5.48070 5.61291 5.65349 5.69952 5.74892 5.78306 5.82617 5.87643 5.95914 6.07682 6.27233 6.35965 6.57083 6.65631 6.76336 6.90160 7.02475 7.58379 7.62037 7.66095 7.86166 8.27938 8.34457 9.25360 9.85345 10.50865 11.44309 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003164 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.557324 B = 8848.655325 C = 9887.571880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.171 3.829 4 C -0.208 4.208 5 C -0.055 4.055 6 C -0.150 4.150 7 C 0.029 3.971 8 Cl -0.041 7.041 9 C -0.143 4.143 10 C 0.573 3.427 11 O -0.527 6.527 12 N -0.586 5.586 13 C 0.080 3.920 14 C 0.125 3.875 15 H 0.106 0.894 16 C -0.151 4.151 17 C 0.180 3.820 18 N -0.603 5.603 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.133 3.867 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.253 0.747 42 H 0.023 0.977 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 19.761 4.305 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.214 6.214 3 C 0.123 3.877 4 C -0.227 4.227 5 C -0.074 4.074 6 C -0.169 4.169 7 C 0.001 3.999 8 Cl -0.012 7.012 9 C -0.147 4.147 10 C 0.359 3.641 11 O -0.403 6.403 12 N -0.317 5.317 13 C -0.063 4.063 14 C 0.021 3.979 15 H 0.124 0.876 16 C -0.190 4.190 17 C 0.055 3.945 18 N -0.330 5.330 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.006 3.994 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.972 19.055 4.775 25.960 hybrid contribution 0.664 -0.134 -0.385 0.779 sum -16.308 18.921 4.390 25.362 Atomic orbital electron populations 1.23177 0.77514 1.04720 1.01452 1.86156 1.21954 1.25807 1.87458 1.18738 0.90053 0.85169 0.93709 1.21280 1.00579 0.91820 1.09052 1.20982 0.93671 0.97450 0.95274 1.20907 0.93634 0.97324 1.05050 1.20648 0.86027 0.92738 1.00451 1.98430 1.08070 1.98328 1.96352 1.19046 0.91296 0.93728 1.10662 1.17704 0.79341 0.82949 0.84127 1.90799 1.55375 1.63202 1.30927 1.47670 1.52059 1.26599 1.05422 1.21722 0.99460 0.98834 0.86309 1.22477 0.91308 0.82430 1.01674 0.87558 1.23232 0.99380 0.97144 0.99292 1.21134 0.82375 0.91231 0.99726 1.44378 1.06453 1.03426 1.78705 1.19010 0.85127 0.93664 1.37809 0.90452 1.24800 0.97727 0.96028 1.01808 1.69948 1.29251 1.03641 1.54128 0.86185 0.83502 0.77559 0.78423 1.21140 1.21610 1.21193 1.21726 0.93770 0.89059 0.94876 0.87646 0.92298 0.92237 0.84300 0.84390 0.84169 0.92422 0.90151 0.91987 0.91900 0.92140 0.93341 0.93699 0.93702 0.95972 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.64 9.95 -18.67 -0.19 -3.83 16 3 C 0.17 2.01 6.25 -38.70 -0.24 1.76 16 4 C -0.21 -1.69 9.03 -39.47 -0.36 -2.05 16 5 C -0.06 -0.39 10.03 -39.55 -0.40 -0.79 16 6 C -0.15 -1.32 9.81 -39.59 -0.39 -1.71 16 7 C 0.03 0.35 6.35 -39.08 -0.25 0.11 16 8 Cl -0.04 -0.54 28.04 -51.86 -1.45 -2.00 16 9 C -0.14 -2.00 3.93 -104.82 -0.41 -2.42 16 10 C 0.57 10.09 5.70 -12.50 -0.07 10.02 16 11 O -0.53 -11.29 16.49 5.28 0.09 -11.20 16 12 N -0.59 -9.93 2.91 -172.74 -0.50 -10.43 16 13 C 0.08 1.08 8.87 59.84 0.53 1.61 16 14 C 0.12 2.48 3.45 -65.78 -0.23 2.25 16 15 H 0.11 2.36 7.02 -51.93 -0.36 2.00 16 16 C -0.15 -3.00 6.51 -24.90 -0.16 -3.17 16 17 C 0.18 4.49 5.37 -3.06 -0.02 4.48 16 18 N -0.60 -15.87 3.39 -170.07 -0.58 -16.45 16 19 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.45 10.31 55.49 0.57 -26.88 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 C 0.13 2.91 6.79 -2.53 -0.02 2.89 16 28 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 31 H 0.14 0.73 6.30 -52.49 -0.33 0.40 16 32 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.08 1.09 6.41 -51.93 -0.33 0.75 16 36 H 0.06 0.73 6.53 -51.93 -0.34 0.39 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.09 6.39 -51.93 -0.33 0.76 16 39 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 40 H 0.04 1.21 7.50 -51.93 -0.39 0.82 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.02 0.47 7.00 -51.93 -0.36 0.11 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -34.84 364.27 -8.57 -43.42 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.71 Total: -2.78 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.27 Total: 7.19 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.51 Total: -53.76 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.10 Total: -15.03 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.45 Total: -2.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.84 -8.57 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033687533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.075 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds