Wall clock time and date at job start Tue Mar 31 2020 20:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47099 * 2 1 4 4 C 1.34780 * 120.00018 * 270.00116 * 3 2 1 5 5 O 1.21277 * 120.00138 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.99602 * 0.02562 * 4 3 2 7 7 S 1.81004 * 109.46883 * 179.97438 * 6 4 3 8 8 C 1.76198 * 99.99791 * 179.97438 * 7 6 4 9 9 H 1.08000 * 120.00489 * 359.97438 * 8 7 6 10 10 C 1.38806 * 119.99620 * 180.02562 * 8 7 6 11 11 N 1.31626 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99747 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47274 * 59.99666 * 12 10 8 14 14 H 1.48498 * 109.47038 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47161 * 299.99917 * 12 10 8 16 16 C 1.46504 * 120.00139 * 89.99814 * 3 2 1 17 17 C 1.53495 * 114.20428 * 120.00052 * 16 3 2 18 18 N 1.47066 * 87.98658 * 87.51928 * 17 16 3 19 19 C 1.34780 * 136.06263 * 206.86221 * 18 17 16 20 20 O 1.21605 * 119.99268 * 359.97438 * 19 18 17 21 21 C 1.47403 * 120.00160 * 180.02562 * 19 18 17 22 22 N 1.31616 * 125.86747 * 0.02562 * 21 19 18 23 23 C 1.33097 * 109.09615 * 179.97438 * 22 21 19 24 24 C 1.35561 * 108.35258 * 0.02562 * 23 22 21 25 25 N 1.35401 * 107.15928 * 359.77173 * 24 23 22 26 26 H 0.97006 * 126.43905 * 180.21720 * 25 24 23 27 27 C 1.47067 * 87.88528 * 27.11900 * 18 17 16 28 28 H 1.09005 * 109.46975 * 300.00054 * 1 2 3 29 29 H 1.08994 * 109.47344 * 60.00139 * 1 2 3 30 30 H 1.09002 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47244 * 239.99964 * 2 1 3 32 32 H 1.08999 * 109.46835 * 119.99354 * 2 1 3 33 33 H 1.08995 * 109.47019 * 299.99541 * 6 4 3 34 34 H 1.09001 * 109.47598 * 60.00110 * 6 4 3 35 35 H 0.96997 * 120.00428 * 180.02562 * 11 10 8 36 36 H 1.08999 * 113.41316 * 346.80140 * 16 3 2 37 37 H 1.09005 * 113.46950 * 332.74494 * 17 16 3 38 38 H 1.08998 * 113.47096 * 202.30138 * 17 16 3 39 39 H 1.08005 * 125.82273 * 180.02562 * 23 22 21 40 40 H 1.08005 * 126.42340 * 180.02562 * 24 23 22 41 41 H 1.09007 * 113.46858 * 87.65629 * 27 18 17 42 42 H 1.08993 * 113.47208 * 218.09965 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6468 3.1602 -1.1672 6 6 1.9912 1.3063 -2.4723 7 16 2.3827 2.4154 -3.8481 8 6 2.0094 1.3593 -5.2082 9 1 1.6551 0.3547 -5.0305 10 6 2.1718 1.8182 -6.5081 11 7 2.6051 3.0420 -6.7247 12 14 1.7754 0.6987 -7.9501 13 1 0.3471 0.2973 -7.8871 14 1 2.0304 1.4211 -9.2222 15 1 2.6331 -0.5120 -7.8872 16 6 2.2625 2.0719 1.2687 17 6 3.7126 2.5360 1.4638 18 7 3.3540 3.7791 0.7646 19 6 4.0051 4.6999 0.0264 20 8 5.1969 4.5791 -0.1831 21 6 3.2728 5.8538 -0.5259 22 7 1.9889 6.0984 -0.3707 23 6 1.6803 7.2255 -1.0077 24 6 2.8061 7.7109 -1.5861 25 7 3.8114 6.8560 -1.2832 26 1 4.7392 6.9383 -1.5542 27 6 1.9736 3.5789 1.2306 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.6211 0.4187 -2.5302 34 1 0.9431 1.0125 -2.5299 35 1 2.7182 3.3628 -7.6331 36 1 1.8382 1.5571 2.1308 37 1 4.4391 1.9285 0.9240 38 1 3.9829 2.6881 2.5087 39 1 0.7001 7.6766 -1.0555 40 1 2.8870 8.6129 -2.1746 41 1 1.7807 4.0089 2.2136 42 1 1.2215 3.8582 0.4929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079341449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:08 Heat of formation + Delta-G solvation = 69.533557 kcal Electronic energy + Delta-G solvation = -28046.309023 eV Core-core repulsion = 24157.052877 eV Total energy + Delta-G solvation = -3889.256146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83964 -40.90676 -38.35811 -36.96912 -35.45347 -32.41714 -32.41114 -30.78542 -29.77302 -29.29515 -27.86252 -25.94095 -25.47475 -23.56679 -23.20292 -21.70750 -21.19888 -19.65477 -18.55159 -17.88518 -17.54896 -16.89989 -16.31326 -16.13914 -15.41841 -15.15435 -15.03077 -14.79283 -14.37744 -13.92596 -13.82484 -13.71622 -13.49510 -13.31632 -13.14642 -12.85310 -12.80696 -12.59038 -12.40954 -12.04542 -11.78269 -11.61057 -11.12699 -11.02033 -11.01766 -10.92631 -10.75353 -9.95787 -9.88749 -9.80727 -9.77767 -9.24845 -9.04106 -8.55215 -8.33114 -8.17904 -7.98331 -6.45564 -6.19805 -3.89036 1.79963 2.72453 2.88550 2.98691 3.12999 3.23687 3.25077 3.28952 3.59546 3.63865 3.91177 4.22521 4.34672 4.52517 4.77977 4.91663 5.00687 5.14840 5.15565 5.22230 5.23937 5.34950 5.37248 5.44344 5.55115 5.65072 5.66249 5.71755 5.77431 5.80210 5.87983 5.97419 6.08567 6.13173 6.25831 6.33899 6.76650 6.88380 7.43189 7.57915 7.60799 7.98181 8.09695 8.36364 8.56857 8.70151 9.25382 10.87462 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.004759 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.284133 B = 5882.339348 C = 7827.313767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.605 5.605 4 C 0.529 3.471 5 O -0.487 6.487 6 C -0.148 4.148 7 S -0.059 6.059 8 C -0.534 4.534 9 H 0.070 0.930 10 C 0.074 3.926 11 N -0.868 5.868 12 Si 0.917 3.083 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.108 3.892 17 C 0.092 3.908 18 N -0.592 5.592 19 C 0.668 3.332 20 O -0.560 6.560 21 C 0.181 3.819 22 N -0.436 5.436 23 C -0.033 4.033 24 C -0.032 4.032 25 N -0.529 5.529 26 H 0.426 0.574 27 C 0.107 3.893 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.268 0.732 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.172 0.828 40 H 0.181 0.819 41 H 0.086 0.914 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 0.358 18.784 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 N -0.341 5.341 4 C 0.316 3.684 5 O -0.358 6.358 6 C -0.298 4.298 7 S 0.168 5.832 8 C -0.683 4.683 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.504 5.504 12 Si 0.743 3.257 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.200 1.200 16 C 0.002 3.998 17 C -0.033 4.033 18 N -0.325 5.325 19 C 0.457 3.543 20 O -0.438 6.438 21 C -0.080 4.080 22 N -0.158 5.158 23 C -0.186 4.186 24 C -0.171 4.171 25 N -0.130 5.130 26 H 0.265 0.735 27 C -0.017 4.017 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.189 0.811 40 H 0.198 0.802 41 H 0.104 0.896 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.334 1.769 18.841 19.067 hybrid contribution 0.082 -1.509 -1.830 2.374 sum -2.251 0.260 17.010 17.161 Atomic orbital electron populations 1.22233 0.95912 1.02103 1.02805 1.21531 0.94432 0.82089 1.03234 1.47727 1.67952 1.14085 1.04335 1.20300 0.76785 0.86963 0.84306 1.90718 1.41930 1.16925 1.86259 1.23575 1.04404 1.04353 0.97488 1.85406 1.86842 1.17734 0.93201 1.22828 1.51637 1.01446 0.92362 0.91143 1.24974 0.94713 0.95509 0.98327 1.70009 1.43060 1.15691 1.21627 0.86252 0.78947 0.80088 0.80384 1.19939 1.20838 1.19962 1.22327 0.95954 0.93976 0.87507 1.23482 0.98065 0.84620 0.97116 1.48431 1.11587 1.23476 1.48961 1.15330 0.83828 0.78640 0.76486 1.90788 1.14716 1.77041 1.61285 1.22306 0.89923 0.93786 1.02034 1.70175 1.09982 1.14539 1.21107 1.22386 0.98822 0.95066 1.02315 1.22821 0.88847 0.98988 1.06439 1.42904 1.12150 1.18960 1.38981 0.73499 1.23224 0.86568 0.91954 0.99992 0.92370 0.91960 0.91708 0.89988 0.90541 0.89799 0.89532 0.92242 0.86508 0.90335 0.89103 0.81101 0.80235 0.89609 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.18 16 2 C 0.11 1.07 5.95 -4.04 -0.02 1.05 16 3 N -0.60 -7.85 2.74 -165.88 -0.46 -8.30 16 4 C 0.53 9.74 7.24 -10.98 -0.08 9.66 16 5 O -0.49 -10.38 8.89 5.56 0.05 -10.33 16 6 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 7 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 8 C -0.53 -15.44 9.50 30.94 0.29 -15.14 16 9 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 10 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 11 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 12 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.11 1.13 4.88 -67.81 -0.33 0.80 16 17 C 0.09 1.10 8.19 -8.51 -0.07 1.03 16 18 N -0.59 -9.48 2.09 -186.53 -0.39 -9.87 16 19 C 0.67 13.08 5.93 -12.53 -0.07 13.00 16 20 O -0.56 -12.41 17.87 5.27 0.09 -12.32 16 21 C 0.18 3.38 7.27 -154.52 -1.12 2.25 16 22 N -0.44 -7.76 9.70 -11.26 -0.11 -7.86 16 23 C -0.03 -0.50 11.85 -17.96 -0.21 -0.71 16 24 C -0.03 -0.44 12.00 -16.93 -0.20 -0.64 16 25 N -0.53 -8.42 6.14 -10.78 -0.07 -8.49 16 26 H 0.43 6.01 8.96 -40.82 -0.37 5.64 16 27 C 0.11 1.35 6.68 -8.51 -0.06 1.30 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.71 7.22 -51.93 -0.37 0.34 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 32 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.08 1.64 7.40 -51.92 -0.38 1.25 16 34 H 0.09 1.67 7.18 -51.91 -0.37 1.29 16 35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.12 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 40 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.57 6.65 -51.93 -0.35 1.23 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -39.27 365.00 -8.83 -48.09 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.52 Total: 5.97 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -1.43 Total: 10.61 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.29 Total: -60.37 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.14 Total: -22.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.27 -8.83 -48.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.625 kcal (2) G-P(sol) polarization free energy of solvation -39.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds