Wall clock time and date at job start Tue Mar 31 2020 20:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47374 * 2 1 4 4 C 1.34781 * 119.99888 * 277.12160 * 3 2 1 5 5 O 1.21283 * 119.99819 * 184.73037 * 4 3 2 6 6 C 1.50698 * 120.00044 * 4.73069 * 4 3 2 7 7 S 1.80999 * 109.47244 * 179.97438 * 6 4 3 8 8 C 1.76204 * 100.00144 * 180.02562 * 7 6 4 9 9 H 1.07995 * 119.99513 * 0.02562 * 8 7 6 10 10 C 1.38797 * 120.00171 * 179.97438 * 8 7 6 11 11 N 1.31627 * 119.99751 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47187 * 60.00305 * 12 10 8 14 14 H 1.48498 * 109.46703 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46891 * 300.00015 * 12 10 8 16 16 C 1.46502 * 120.00227 * 97.39989 * 3 2 1 17 17 C 1.53945 * 113.73849 * 42.32922 * 16 3 2 18 18 N 1.47816 * 86.03612 * 222.08493 * 17 16 3 19 19 C 1.34771 * 134.46020 * 204.64293 * 18 17 16 20 20 O 1.21609 * 120.00083 * 179.86797 * 19 18 17 21 21 C 1.47426 * 119.99923 * 359.87149 * 19 18 17 22 22 C 1.41294 * 126.41501 * 0.02562 * 21 19 18 23 23 N 1.30449 * 108.02340 * 179.97438 * 22 21 19 24 24 N 1.39933 * 108.89587 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.75528 * 179.97438 * 24 23 22 26 26 C 1.34262 * 108.49446 * 359.75256 * 24 23 22 27 27 C 1.47588 * 91.04928 * 24.54968 * 18 17 16 28 28 H 1.08997 * 109.46782 * 51.92677 * 1 2 3 29 29 H 1.09002 * 109.47276 * 171.93042 * 1 2 3 30 30 H 1.09002 * 109.46778 * 291.92987 * 1 2 3 31 31 H 1.09003 * 109.46907 * 239.99557 * 2 1 3 32 32 H 1.09002 * 109.47147 * 120.00193 * 2 1 3 33 33 H 1.08999 * 109.47362 * 299.99746 * 6 4 3 34 34 H 1.09009 * 109.47132 * 59.99978 * 6 4 3 35 35 H 0.97003 * 120.00303 * 179.97438 * 11 10 8 36 36 H 1.08995 * 112.94451 * 173.91702 * 16 3 2 37 37 H 1.08999 * 113.77223 * 336.34914 * 17 16 3 38 38 H 1.08997 * 113.77029 * 107.75381 * 17 16 3 39 39 H 1.08005 * 125.98694 * 359.94656 * 22 21 19 40 40 H 1.07995 * 126.29260 * 180.23716 * 26 24 23 41 41 H 1.08998 * 113.76962 * 221.15627 * 27 18 17 42 42 H 1.09000 * 113.76901 * 89.75318 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1066 2.0647 -1.1582 5 8 2.5907 3.1767 -1.1707 6 6 1.6037 1.4474 -2.4377 7 16 1.8594 2.6035 -3.8067 8 6 1.2011 1.6534 -5.1366 9 1 0.8032 0.6669 -4.9502 10 6 1.1929 2.1733 -6.4235 11 7 1.6775 3.3759 -6.6505 12 14 0.4943 1.1663 -7.8332 13 1 -0.9327 0.8582 -7.5618 14 1 0.6026 1.9406 -9.0957 15 1 1.2583 -0.1004 -7.9628 16 6 2.4166 2.0173 1.2581 17 6 3.2348 1.0997 2.1847 18 7 2.4149 1.6506 3.2844 19 6 2.5919 1.7957 4.6125 20 8 1.7185 2.3019 5.2906 21 6 3.8443 1.3409 5.2433 22 6 4.9424 0.7386 4.5891 23 7 5.8547 0.4815 5.4854 24 7 5.3912 0.9013 6.7372 25 1 5.8745 0.8262 7.5749 26 6 4.1668 1.4300 6.5826 27 6 1.3261 1.9797 2.3440 28 1 -0.3633 0.6337 -0.8090 29 1 -0.3634 -1.0175 -0.1443 30 1 -0.3633 0.3838 0.9533 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1489 0.5243 -2.6346 34 1 0.5403 1.2279 -2.3418 35 1 1.6722 3.7392 -7.5499 36 1 2.8591 3.0030 1.1144 37 1 3.0725 0.0369 2.0056 38 1 4.2900 1.3658 2.2464 39 1 5.0137 0.5276 3.5323 40 1 3.5468 1.8456 7.3631 41 1 0.8603 2.9470 2.5324 42 1 0.6018 1.1759 2.2117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:52 Heat of formation + Delta-G solvation = 56.222819 kcal Electronic energy + Delta-G solvation = -26210.128888 eV Core-core repulsion = 22320.295546 eV Total energy + Delta-G solvation = -3889.833343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81976 -40.78492 -39.08927 -37.64520 -35.34824 -32.44311 -32.43159 -31.16812 -30.57568 -29.69223 -28.14921 -26.77780 -25.50396 -23.81426 -23.16940 -22.41925 -21.34944 -19.77362 -19.18443 -18.54419 -17.76718 -17.27837 -16.65980 -16.20043 -15.98621 -15.40441 -15.15011 -15.02409 -14.81860 -14.61752 -14.05513 -13.96230 -13.67657 -13.60981 -13.42638 -13.11207 -13.03996 -12.80719 -12.54940 -12.47213 -12.02089 -11.58174 -11.56047 -11.37953 -11.09265 -11.05737 -10.99988 -10.77952 -10.33836 -10.15156 -9.83382 -9.45210 -9.34514 -9.07089 -8.90464 -8.70052 -8.25106 -6.52009 -6.22832 -3.93834 1.09909 1.73885 2.16317 2.44190 2.89698 2.91397 3.16441 3.22473 3.25895 3.28491 3.56330 3.96699 4.18284 4.19056 4.34129 4.50302 4.59285 4.63231 4.81785 4.87313 4.94083 5.01250 5.05338 5.07903 5.12195 5.15833 5.32239 5.41873 5.51049 5.56894 5.59757 5.72760 5.84584 5.91810 5.94816 6.01738 6.24227 6.53490 6.58864 6.99730 7.33535 7.45883 7.57931 7.95256 8.33503 8.44884 9.22386 10.84448 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027675 B = 0.002103 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.490562 B =13310.389047 C =13508.332411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 N -0.611 5.611 4 C 0.538 3.462 5 O -0.511 6.511 6 C -0.151 4.151 7 S -0.062 6.062 8 C -0.535 4.535 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.118 3.882 17 C 0.080 3.920 18 N -0.637 5.637 19 C 0.621 3.379 20 O -0.548 6.548 21 C -0.289 4.289 22 C 0.081 3.919 23 N -0.294 5.294 24 N -0.463 5.463 25 H 0.445 0.555 26 C 0.135 3.865 27 C 0.094 3.906 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.269 0.731 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.194 0.806 40 H 0.193 0.807 41 H 0.089 0.911 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -9.512 25.012 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 N -0.347 5.347 4 C 0.327 3.673 5 O -0.384 6.384 6 C -0.302 4.302 7 S 0.165 5.835 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.012 3.988 17 C -0.044 4.044 18 N -0.372 5.372 19 C 0.412 3.588 20 O -0.427 6.427 21 C -0.304 4.304 22 C -0.107 4.107 23 N -0.115 5.115 24 N -0.169 5.169 25 H 0.290 0.710 26 C -0.019 4.019 27 C -0.029 4.029 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.210 0.790 40 H 0.210 0.790 41 H 0.107 0.893 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.196 -7.903 25.606 27.297 hybrid contribution -1.608 -1.794 -0.573 2.476 sum 3.588 -9.697 25.033 27.084 Atomic orbital electron populations 1.22400 0.95673 1.02785 1.02870 1.21612 0.94793 0.82330 1.03380 1.47948 1.66539 1.14278 1.05929 1.20401 0.77385 0.85398 0.84157 1.90708 1.42723 1.19358 1.85617 1.23642 1.03975 1.05216 0.97343 1.85421 1.81097 1.20989 0.96034 1.22801 1.46932 1.04575 0.94032 0.90972 1.24988 0.95079 0.95263 0.98232 1.70004 1.42848 1.15288 1.22082 0.86233 0.79427 0.79669 0.80232 1.19936 1.20837 1.19942 1.23003 0.94806 0.98870 0.82099 1.23968 0.97619 0.99608 0.83159 1.49420 1.20839 1.61933 1.05044 1.16748 0.85283 0.77518 0.79219 1.90793 1.44623 1.45814 1.61465 1.20210 0.98811 1.17734 0.93618 1.24459 0.90306 0.95895 1.00077 1.77215 1.22958 1.22601 0.88757 1.46271 1.13766 1.46918 1.09902 0.70978 1.23058 0.87089 0.93838 0.97888 1.23823 0.92172 1.02535 0.84338 0.91322 0.91373 0.92285 0.89751 0.90162 0.89172 0.88873 0.92117 0.84702 0.88649 0.88963 0.78983 0.79045 0.89269 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.94 37.16 0.37 -1.18 16 2 C 0.10 0.89 5.20 -4.04 -0.02 0.87 16 3 N -0.61 -7.28 2.71 -167.90 -0.46 -7.73 16 4 C 0.54 9.25 7.60 -10.98 -0.08 9.16 16 5 O -0.51 -10.81 15.33 5.56 0.09 -10.73 16 6 C -0.15 -2.85 4.81 36.00 0.17 -2.68 16 7 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 8 C -0.54 -14.79 9.50 30.94 0.29 -14.50 16 9 H 0.07 1.87 7.80 -52.49 -0.41 1.47 16 10 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 11 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 12 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 16 C 0.12 1.24 4.42 -70.14 -0.31 0.93 16 17 C 0.08 0.62 6.65 -2.84 -0.02 0.60 16 18 N -0.64 -6.34 3.61 -179.59 -0.65 -6.99 16 19 C 0.62 7.23 8.05 -12.52 -0.10 7.13 16 20 O -0.55 -8.18 17.63 5.27 0.09 -8.09 16 21 C -0.29 -2.68 6.12 -105.07 -0.64 -3.32 16 22 C 0.08 0.67 11.07 -16.98 -0.19 0.49 16 23 N -0.29 -2.59 12.63 30.86 0.39 -2.20 16 24 N -0.46 -2.75 7.29 30.85 0.22 -2.53 16 25 H 0.45 1.03 8.96 -182.72 -1.64 -0.60 16 26 C 0.13 0.92 11.82 -16.56 -0.20 0.72 16 27 C 0.09 0.94 8.41 -2.96 -0.02 0.91 16 28 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 5.99 -51.93 -0.31 0.16 16 31 H 0.08 0.74 6.79 -51.93 -0.35 0.39 16 32 H 0.08 0.50 5.75 -51.93 -0.30 0.20 16 33 H 0.09 1.56 7.31 -51.92 -0.38 1.18 16 34 H 0.09 1.63 6.25 -51.91 -0.32 1.31 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.14 1.69 7.18 -51.93 -0.37 1.31 16 37 H 0.10 0.56 5.98 -51.93 -0.31 0.25 16 38 H 0.09 0.60 6.24 -51.93 -0.32 0.27 16 39 H 0.19 1.20 5.14 -52.48 -0.27 0.93 16 40 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 0.82 5.34 -51.93 -0.28 0.54 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -37.83 360.51 -8.22 -46.05 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.99 Total: -1.43 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.85 Total: 1.08 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.24 Total: -44.43 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.82 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.83 -8.22 -46.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.274 kcal (2) G-P(sol) polarization free energy of solvation -37.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds