Wall clock time and date at job start Tue Mar 31 2020 20:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47374 * 2 1 4 4 C 1.34781 * 119.99888 * 277.12160 * 3 2 1 5 5 O 1.21283 * 119.99819 * 184.73037 * 4 3 2 6 6 C 1.50698 * 120.00044 * 4.73069 * 4 3 2 7 7 S 1.80999 * 109.47244 * 179.97438 * 6 4 3 8 8 C 1.76204 * 100.00144 * 180.02562 * 7 6 4 9 9 H 1.07995 * 119.99513 * 0.02562 * 8 7 6 10 10 C 1.38797 * 120.00171 * 179.97438 * 8 7 6 11 11 N 1.31627 * 119.99751 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99925 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47187 * 60.00305 * 12 10 8 14 14 H 1.48498 * 109.46703 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46891 * 300.00015 * 12 10 8 16 16 C 1.46502 * 120.00227 * 97.39989 * 3 2 1 17 17 C 1.53945 * 113.73849 * 42.32922 * 16 3 2 18 18 N 1.47816 * 86.03612 * 222.08493 * 17 16 3 19 19 C 1.34771 * 134.46020 * 204.64293 * 18 17 16 20 20 O 1.21609 * 120.00083 * 179.86797 * 19 18 17 21 21 C 1.47426 * 119.99923 * 359.87149 * 19 18 17 22 22 C 1.41294 * 126.41501 * 0.02562 * 21 19 18 23 23 N 1.30449 * 108.02340 * 179.97438 * 22 21 19 24 24 N 1.39933 * 108.89587 * 359.97438 * 23 22 21 25 25 H 0.97005 * 125.75528 * 179.97438 * 24 23 22 26 26 C 1.34262 * 108.49446 * 359.75256 * 24 23 22 27 27 C 1.47588 * 91.04928 * 24.54968 * 18 17 16 28 28 H 1.08997 * 109.46782 * 51.92677 * 1 2 3 29 29 H 1.09002 * 109.47276 * 171.93042 * 1 2 3 30 30 H 1.09002 * 109.46778 * 291.92987 * 1 2 3 31 31 H 1.09003 * 109.46907 * 239.99557 * 2 1 3 32 32 H 1.09002 * 109.47147 * 120.00193 * 2 1 3 33 33 H 1.08999 * 109.47362 * 299.99746 * 6 4 3 34 34 H 1.09009 * 109.47132 * 59.99978 * 6 4 3 35 35 H 0.97003 * 120.00303 * 179.97438 * 11 10 8 36 36 H 1.08995 * 112.94451 * 173.91702 * 16 3 2 37 37 H 1.08999 * 113.77223 * 336.34914 * 17 16 3 38 38 H 1.08997 * 113.77029 * 107.75381 * 17 16 3 39 39 H 1.08005 * 125.98694 * 359.94656 * 22 21 19 40 40 H 1.07995 * 126.29260 * 180.23716 * 26 24 23 41 41 H 1.08998 * 113.76962 * 221.15627 * 27 18 17 42 42 H 1.09000 * 113.76901 * 89.75318 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1066 2.0647 -1.1582 5 8 2.5907 3.1767 -1.1707 6 6 1.6037 1.4474 -2.4377 7 16 1.8594 2.6035 -3.8067 8 6 1.2011 1.6534 -5.1366 9 1 0.8032 0.6669 -4.9502 10 6 1.1929 2.1733 -6.4235 11 7 1.6775 3.3759 -6.6505 12 14 0.4943 1.1663 -7.8332 13 1 -0.9327 0.8582 -7.5618 14 1 0.6026 1.9406 -9.0957 15 1 1.2583 -0.1004 -7.9628 16 6 2.4166 2.0173 1.2581 17 6 3.2348 1.0997 2.1847 18 7 2.4149 1.6506 3.2844 19 6 2.5919 1.7957 4.6125 20 8 1.7185 2.3019 5.2906 21 6 3.8443 1.3409 5.2433 22 6 4.9424 0.7386 4.5891 23 7 5.8547 0.4815 5.4854 24 7 5.3912 0.9013 6.7372 25 1 5.8745 0.8262 7.5749 26 6 4.1668 1.4300 6.5826 27 6 1.3261 1.9797 2.3440 28 1 -0.3633 0.6337 -0.8090 29 1 -0.3634 -1.0175 -0.1443 30 1 -0.3633 0.3838 0.9533 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1489 0.5243 -2.6346 34 1 0.5403 1.2279 -2.3418 35 1 1.6722 3.7392 -7.5499 36 1 2.8591 3.0030 1.1144 37 1 3.0725 0.0369 2.0056 38 1 4.2900 1.3658 2.2464 39 1 5.0137 0.5276 3.5323 40 1 3.5468 1.8456 7.3631 41 1 0.8603 2.9470 2.5324 42 1 0.6018 1.1759 2.2117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:51 Heat of formation + Delta-G solvation = 27.903049 kcal Electronic energy + Delta-G solvation = -26211.356926 eV Core-core repulsion = 22320.295546 eV Total energy + Delta-G solvation = -3891.061380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44720 -41.68183 -40.19267 -38.67188 -36.39842 -34.54811 -33.04346 -31.96033 -31.32315 -30.94949 -29.15988 -27.62153 -27.50227 -24.58344 -24.05040 -23.01342 -22.23886 -20.52503 -20.21310 -19.58002 -19.22698 -18.43297 -17.51280 -17.20495 -16.84824 -16.82294 -16.37371 -16.31575 -15.93770 -15.56267 -15.18827 -14.89643 -14.71534 -14.66869 -14.38005 -14.26625 -13.89101 -13.77408 -13.62077 -13.44480 -13.22688 -13.11808 -12.84504 -12.60536 -12.38856 -12.23763 -12.18185 -11.80858 -11.71085 -11.09232 -11.06627 -10.89400 -10.80995 -10.21354 -10.05380 -9.74128 -9.64322 -8.62381 -8.31003 -6.08533 0.50279 1.09439 1.25339 1.43315 1.46193 1.53694 1.57335 1.65011 1.88217 2.17491 2.31040 2.43050 3.03133 3.25436 3.30875 3.38089 3.70734 3.79410 3.86081 3.94266 4.06605 4.13223 4.21406 4.27255 4.35902 4.40024 4.45255 4.47392 4.55078 4.61098 4.69755 4.83170 4.89644 5.00791 5.11806 5.31747 5.44317 5.45486 5.60539 6.19117 6.22800 6.25738 6.45432 6.61124 7.10411 7.11275 7.15481 8.77725 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027675 B = 0.002103 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.490562 B =13310.389047 C =13508.332411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.539 3.461 5 O -0.561 6.561 6 C -0.124 4.124 7 S -0.156 6.156 8 C -0.542 4.542 9 H 0.084 0.916 10 C 0.012 3.988 11 N -0.912 5.912 12 Si 0.996 3.004 13 H -0.262 1.262 14 H -0.282 1.282 15 H -0.261 1.261 16 C 0.110 3.890 17 C 0.095 3.905 18 N -0.638 5.638 19 C 0.619 3.381 20 O -0.592 6.592 21 C -0.317 4.317 22 C 0.084 3.916 23 N -0.321 5.321 24 N -0.449 5.449 25 H 0.461 0.539 26 C 0.149 3.851 27 C 0.096 3.904 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.270 0.730 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.210 0.790 40 H 0.216 0.784 41 H 0.073 0.927 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -12.765 26.283 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.327 3.673 5 O -0.439 6.439 6 C -0.275 4.275 7 S 0.071 5.929 8 C -0.690 4.690 9 H 0.102 0.898 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.818 3.182 13 H -0.187 1.187 14 H -0.207 1.207 15 H -0.185 1.185 16 C 0.005 3.995 17 C -0.028 4.028 18 N -0.372 5.372 19 C 0.411 3.589 20 O -0.474 6.474 21 C -0.332 4.332 22 C -0.104 4.104 23 N -0.142 5.142 24 N -0.155 5.155 25 H 0.309 0.691 26 C -0.006 4.006 27 C -0.027 4.027 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.226 0.774 40 H 0.232 0.768 41 H 0.092 0.908 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.127 -11.222 26.920 29.613 hybrid contribution -1.574 -0.811 -0.782 1.935 sum 3.554 -12.033 26.138 28.993 Atomic orbital electron populations 1.22381 0.95359 1.03598 1.02233 1.21987 0.95043 0.80266 1.05536 1.47832 1.64920 1.15136 1.04678 1.20132 0.77200 0.84904 0.85078 1.90696 1.45295 1.21523 1.86403 1.23467 1.05395 1.03544 0.95075 1.85611 1.81725 1.25462 1.00071 1.23149 1.46603 1.04868 0.94406 0.89795 1.26113 0.95300 0.96419 1.01395 1.70180 1.44503 1.17402 1.22721 0.85033 0.79045 0.78049 0.76066 1.18694 1.20689 1.18525 1.23014 0.96075 0.98759 0.81642 1.24087 0.97846 1.00404 0.80433 1.49416 1.21117 1.61627 1.05020 1.17076 0.85570 0.76884 0.79344 1.90763 1.46155 1.47966 1.62478 1.20184 0.98467 1.19800 0.94768 1.24691 0.89647 0.95215 1.00844 1.77174 1.23651 1.23610 0.89728 1.46290 1.13477 1.45748 1.09985 0.69094 1.23428 0.87121 0.92262 0.97739 1.23822 0.92373 1.02559 0.83944 0.93875 0.89223 0.91622 0.89188 0.86489 0.87048 0.87303 0.92107 0.87251 0.85569 0.87384 0.77420 0.76790 0.90828 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.94 71.98 0.72 -1.84 16 2 C 0.09 1.30 5.20 86.38 0.45 1.75 16 3 N -0.59 -13.17 2.71 -803.52 -2.18 -15.35 16 4 C 0.54 18.52 7.60 87.66 0.67 19.18 16 5 O -0.56 -24.74 15.33 -3.04 -0.05 -24.79 16 6 C -0.12 -4.62 4.81 71.24 0.34 -4.28 16 7 S -0.16 -8.43 20.57 -56.49 -1.16 -9.60 16 8 C -0.54 -30.18 9.50 67.95 0.65 -29.53 16 9 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 10 C 0.01 0.70 5.49 84.86 0.47 1.16 16 11 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 12 Si 1.00 42.79 29.55 68.60 2.03 44.81 16 13 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 14 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 C 0.11 2.20 4.42 46.75 0.21 2.41 16 17 C 0.09 1.19 6.65 86.44 0.57 1.77 16 18 N -0.64 -11.68 3.61 -840.37 -3.04 -14.72 16 19 C 0.62 13.74 8.05 86.66 0.70 14.44 16 20 O -0.59 -17.53 17.63 -4.06 -0.07 -17.60 16 21 C -0.32 -5.34 6.12 -20.15 -0.12 -5.47 16 22 C 0.08 1.21 11.07 85.65 0.95 2.16 16 23 N -0.32 -4.96 12.63 -56.27 -0.71 -5.67 16 24 N -0.45 -4.31 7.29 -56.32 -0.41 -4.72 16 25 H 0.46 1.04 8.96 -213.42 -1.91 -0.88 16 26 C 0.15 1.73 11.82 84.28 1.00 2.73 16 27 C 0.10 1.81 8.41 86.48 0.73 2.54 16 28 H 0.04 0.86 6.17 -2.39 -0.01 0.84 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.86 5.99 -2.39 -0.01 0.85 16 31 H 0.09 1.24 6.79 -2.39 -0.02 1.23 16 32 H 0.12 0.84 5.75 -2.39 -0.01 0.83 16 33 H 0.11 3.66 7.31 -2.40 -0.02 3.65 16 34 H 0.11 3.72 6.25 -2.39 -0.01 3.71 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.11 2.83 7.18 -2.39 -0.02 2.81 16 37 H 0.13 0.86 5.98 -2.39 -0.01 0.85 16 38 H 0.11 1.09 6.24 -2.39 -0.01 1.08 16 39 H 0.21 1.99 5.14 -2.91 -0.01 1.97 16 40 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.11 1.69 5.34 -2.39 -0.01 1.67 16 Total: -1.00 -86.67 360.51 1.19 -85.47 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -0.81 Total: 10.30 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 7.31 Total: 7.02 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -6.05 Total: -95.62 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.12 Total: -42.38 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -86.67 1.19 -85.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.376 kcal (2) G-P(sol) polarization free energy of solvation -86.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds