Wall clock time and date at job start Tue Mar 31 2020 20:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46894 * 2 1 4 4 C 1.34774 * 119.99886 * 275.60240 * 3 2 1 5 5 O 1.21577 * 120.00224 * 184.67977 * 4 3 2 6 6 C 1.47709 * 120.00353 * 4.69239 * 4 3 2 7 7 C 1.41500 * 126.52154 * 174.94319 * 6 4 3 8 8 C 1.35366 * 105.50320 * 179.90215 * 7 6 4 9 9 N 1.35038 * 107.22948 * 0.35387 * 8 7 6 10 10 H 0.97000 * 124.88582 * 179.76123 * 9 8 7 11 11 N 1.28469 * 110.22675 * 359.77081 * 9 8 7 12 12 C 1.46500 * 119.99951 * 95.61557 * 3 2 1 13 13 C 1.53501 * 114.20186 * 232.59397 * 12 3 2 14 14 N 1.47069 * 87.98290 * 220.14671 * 13 12 3 15 15 C 1.34780 * 136.05467 * 207.08609 * 14 13 12 16 16 O 1.21272 * 120.00168 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99568 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47079 * 180.02562 * 17 15 14 19 19 C 1.76191 * 100.00488 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00444 * 179.72522 * 19 18 17 22 22 N 1.31631 * 120.00460 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99956 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47268 * 89.99916 * 23 21 19 25 25 H 1.48498 * 109.47171 * 210.00104 * 23 21 19 26 26 H 1.48508 * 109.47114 * 330.00165 * 23 21 19 27 27 C 1.47060 * 87.88586 * 27.34158 * 14 13 12 28 28 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47242 * 299.99971 * 1 2 3 30 30 H 1.08997 * 109.47631 * 59.99948 * 1 2 3 31 31 H 1.09005 * 109.46732 * 240.00037 * 2 1 3 32 32 H 1.09002 * 109.46958 * 120.00229 * 2 1 3 33 33 H 1.07992 * 127.24923 * 0.02562 * 7 6 4 34 34 H 1.08001 * 126.38646 * 180.15470 * 8 7 6 35 35 H 1.09000 * 113.28239 * 5.65304 * 12 3 2 36 36 H 1.08999 * 113.47043 * 105.36781 * 13 12 3 37 37 H 1.09004 * 113.46533 * 334.91927 * 13 12 3 38 38 H 1.08996 * 109.47608 * 59.99720 * 17 15 14 39 39 H 1.09001 * 109.46877 * 299.99604 * 17 15 14 40 40 H 0.96993 * 120.00294 * 179.97438 * 22 21 19 41 41 H 1.09001 * 113.46795 * 87.44009 * 27 14 13 42 42 H 1.09007 * 113.47118 * 217.87794 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1354 2.0545 -1.1616 5 8 2.6201 3.1694 -1.1718 6 6 1.6748 1.4380 -2.4224 7 6 1.6389 2.0526 -3.6964 8 6 1.1501 1.1120 -4.5383 9 7 0.9031 0.0067 -3.8030 10 1 0.5428 -0.8233 -4.1528 11 7 1.2136 0.2125 -2.5735 12 6 2.3794 2.0304 1.2626 13 6 1.6973 3.3865 1.4906 14 7 2.9711 3.8765 2.0387 15 6 3.3475 4.8204 2.9241 16 8 2.5104 5.5041 3.4741 17 6 4.8086 5.0267 3.2299 18 16 4.9887 6.3538 4.4475 19 6 6.7425 6.3799 4.6147 20 1 7.3497 5.6936 4.0429 21 6 7.3441 7.2857 5.4772 22 7 8.6543 7.3049 5.6025 23 14 6.2944 8.4777 6.4603 24 1 5.9304 7.8603 7.7609 25 1 7.0593 9.7273 6.7024 26 1 5.0589 8.7932 5.6992 27 6 3.6537 2.8879 1.1905 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9400 3.0594 -3.9452 34 1 0.9851 1.2256 -5.5996 35 1 2.3366 1.3588 2.1201 36 1 0.8937 3.3500 2.2262 37 1 1.4020 3.8845 0.5671 38 1 5.3365 5.2979 2.3156 39 1 5.2292 4.1052 3.6325 40 1 9.0746 7.9382 6.2050 41 1 3.8740 3.2544 0.1879 42 1 4.5169 2.4264 1.6703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079352833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:24 Heat of formation + Delta-G solvation = 75.481988 kcal Electronic energy + Delta-G solvation = -26435.909570 eV Core-core repulsion = 22546.911368 eV Total energy + Delta-G solvation = -3888.998202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.13249 -41.09585 -38.99174 -37.21219 -36.02307 -32.38193 -32.30766 -31.34870 -30.91237 -29.97326 -27.75461 -25.93874 -25.53076 -24.97835 -23.30363 -22.57710 -21.79810 -19.47704 -19.02028 -18.77141 -17.64647 -17.20530 -16.77110 -16.36989 -16.25290 -15.57591 -15.09772 -14.94421 -14.63475 -14.56864 -14.37404 -13.99748 -13.84713 -13.60263 -13.53647 -13.07329 -12.80935 -12.77560 -12.65596 -12.34993 -12.10896 -11.86832 -11.65733 -11.21013 -11.07117 -10.98953 -10.95349 -10.53895 -10.22173 -9.85465 -9.79699 -9.65225 -9.40654 -8.95203 -8.94364 -8.44042 -8.41533 -6.84985 -6.23032 -3.94143 1.11934 1.68716 2.22558 2.53011 2.81553 3.00171 3.06764 3.32515 3.38275 3.56496 3.67372 3.89575 4.19814 4.36105 4.38891 4.49846 4.61668 4.69382 4.81793 4.93748 5.00707 5.13491 5.15949 5.18292 5.20903 5.27788 5.39356 5.46863 5.59207 5.59364 5.68047 5.78200 5.85045 5.90194 5.97937 6.00166 6.13264 6.41119 6.48114 6.98290 7.34165 7.83274 7.92369 8.00269 8.48057 8.54550 9.23218 10.86233 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.002183 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.573907 B =12825.788717 C =13179.634605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.603 3.397 5 O -0.516 6.516 6 C -0.011 4.011 7 C -0.177 4.177 8 C -0.014 4.014 9 N -0.386 5.386 10 H 0.446 0.554 11 N -0.253 5.253 12 C 0.108 3.892 13 C 0.098 3.902 14 N -0.643 5.643 15 C 0.564 3.436 16 O -0.519 6.519 17 C -0.114 4.114 18 S -0.143 6.143 19 C -0.519 4.519 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.079 3.921 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.185 0.815 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.122 0.878 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 -22.240 -22.348 36.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.322 5.322 4 C 0.389 3.611 5 O -0.390 6.390 6 C -0.172 4.172 7 C -0.205 4.205 8 C -0.158 4.158 9 N -0.100 5.100 10 H 0.290 0.710 11 N -0.090 5.090 12 C 0.003 3.997 13 C -0.026 4.026 14 N -0.381 5.381 15 C 0.354 3.646 16 O -0.394 6.394 17 C -0.264 4.264 18 S 0.084 5.916 19 C -0.666 4.666 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.518 5.518 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.045 4.045 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.182 0.818 34 H 0.202 0.798 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.139 0.861 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.232 -21.282 -20.658 35.349 hybrid contribution 0.740 -0.067 -0.922 1.184 sum -18.492 -21.349 -21.579 35.545 Atomic orbital electron populations 1.22096 0.95668 1.02046 1.02102 1.21896 0.94924 0.81112 1.04064 1.47661 1.64514 1.14677 1.05322 1.17025 0.77986 0.84521 0.81522 1.90765 1.43597 1.18968 1.85711 1.21923 1.07563 0.91953 0.95728 1.21846 1.06014 1.01722 0.90875 1.22975 1.05607 0.87627 0.99631 1.43527 1.46994 1.14306 1.05181 0.70990 1.73744 1.16319 1.18544 1.00381 1.23110 0.97011 0.93399 0.86174 1.23260 0.89160 0.91141 0.99056 1.49211 1.10149 1.37246 1.41526 1.19802 0.90695 0.76920 0.77190 1.90700 1.53572 1.44421 1.50663 1.23200 0.94069 1.04619 1.04516 1.84757 1.10789 1.43432 1.52660 1.22317 0.88746 1.24767 1.30815 0.89375 1.24709 0.94688 0.96355 0.95600 1.69939 1.08566 1.36498 1.36800 0.86731 0.82177 0.81069 0.81868 1.19225 1.19970 1.15878 1.23837 0.95792 0.87072 0.97823 0.91741 0.92764 0.92334 0.88020 0.90330 0.81839 0.79807 0.85271 0.90516 0.89049 0.88467 0.88613 0.91992 0.86077 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.67 37.16 0.36 -0.60 16 2 C 0.10 0.65 5.73 -4.04 -0.02 0.63 16 3 N -0.59 -5.31 2.77 -166.89 -0.46 -5.77 16 4 C 0.60 6.55 7.10 -12.39 -0.09 6.46 16 5 O -0.52 -7.17 12.50 5.30 0.07 -7.11 16 6 C -0.01 -0.10 6.48 -82.77 -0.54 -0.64 16 7 C -0.18 -1.30 10.81 -39.36 -0.43 -1.72 16 8 C -0.01 -0.05 12.02 -17.17 -0.21 -0.26 16 9 N -0.39 -1.37 6.83 30.47 0.21 -1.16 16 10 H 0.45 -0.09 8.96 -190.44 -1.71 -1.79 16 11 N -0.25 -1.65 7.33 33.42 0.25 -1.40 16 12 C 0.11 1.09 4.80 -67.67 -0.32 0.76 16 13 C 0.10 1.30 8.04 -8.50 -0.07 1.23 16 14 N -0.64 -10.41 3.69 -185.07 -0.68 -11.09 16 15 C 0.56 11.63 8.10 -10.98 -0.09 11.54 16 16 O -0.52 -12.54 16.64 5.56 0.09 -12.44 16 17 C -0.11 -2.45 5.98 36.01 0.22 -2.23 16 18 S -0.14 -3.83 18.55 -107.50 -1.99 -5.82 16 19 C -0.52 -15.50 10.04 30.94 0.31 -15.19 16 20 H 0.09 2.74 8.03 -52.48 -0.42 2.32 16 21 C 0.09 2.86 5.50 -17.43 -0.10 2.76 16 22 N -0.88 -27.22 13.97 55.49 0.78 -26.45 16 23 Si 0.86 22.44 27.74 -169.99 -4.71 17.73 16 24 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.23 -6.17 6.74 56.52 0.38 -5.79 16 27 C 0.08 1.00 7.78 -8.38 -0.07 0.94 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.06 0.43 6.61 -51.93 -0.34 0.08 16 31 H 0.10 0.65 5.61 -51.93 -0.29 0.36 16 32 H 0.08 0.39 7.89 -51.93 -0.41 -0.02 16 33 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.18 0.04 8.06 -52.49 -0.42 -0.39 16 35 H 0.13 1.04 7.93 -51.93 -0.41 0.63 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.30 6.48 -51.93 -0.34 0.97 16 38 H 0.10 2.02 8.14 -51.92 -0.42 1.59 16 39 H 0.10 1.91 8.14 -51.91 -0.42 1.49 16 40 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.12 1.71 5.21 -51.93 -0.27 1.44 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -38.73 363.00 -8.76 -47.49 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -6.73 Total: -3.12 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.04 Total: 3.68 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.08 Total: -45.87 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.16 Total: -19.55 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -1.99 Total: -5.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.73 -8.76 -47.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079352833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.970 kcal (2) G-P(sol) polarization free energy of solvation -38.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds