Wall clock time and date at job start Tue Mar 31 2020 20:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46868 * 2 1 4 4 C 1.34773 * 120.00248 * 273.73039 * 3 2 1 5 5 O 1.21602 * 119.99779 * 184.34115 * 4 3 2 6 6 C 1.47426 * 120.00187 * 4.34061 * 4 3 2 7 7 C 1.41295 * 126.41038 * 7.90854 * 6 4 3 8 8 N 1.30448 * 108.01850 * 179.87967 * 7 6 4 9 9 N 1.39935 * 108.89812 * 0.38225 * 8 7 6 10 10 H 0.96998 * 125.75136 * 179.73483 * 9 8 7 11 11 C 1.34255 * 108.49449 * 359.75296 * 9 8 7 12 12 C 1.46501 * 119.99626 * 93.73115 * 3 2 1 13 13 C 1.53497 * 114.20824 * 231.82877 * 12 3 2 14 14 N 1.47063 * 87.98911 * 220.15152 * 13 12 3 15 15 C 1.34776 * 136.05724 * 207.09048 * 14 13 12 16 16 O 1.21277 * 119.99915 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00133 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47249 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00026 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00054 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99792 * 179.72535 * 19 18 17 22 22 N 1.31636 * 120.00146 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46867 * 89.99830 * 23 21 19 25 25 H 1.48502 * 109.47313 * 209.99905 * 23 21 19 26 26 H 1.48495 * 109.46933 * 330.00105 * 23 21 19 27 27 C 1.47068 * 87.88438 * 27.33800 * 14 13 12 28 28 H 1.08997 * 109.47387 * 299.99598 * 1 2 3 29 29 H 1.09000 * 109.47411 * 59.99784 * 1 2 3 30 30 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47387 * 240.00402 * 2 1 3 32 32 H 1.09000 * 109.47411 * 120.00216 * 2 1 3 33 33 H 1.07992 * 125.98907 * 359.97438 * 7 6 4 34 34 H 1.08000 * 126.29484 * 180.02562 * 11 9 8 35 35 H 1.08997 * 113.28617 * 4.90018 * 12 3 2 36 36 H 1.09004 * 113.46591 * 105.36333 * 13 12 3 37 37 H 1.09002 * 113.46547 * 334.93442 * 13 12 3 38 38 H 1.09001 * 109.47297 * 59.99523 * 17 15 14 39 39 H 1.09001 * 109.46995 * 299.99809 * 17 15 14 40 40 H 0.97004 * 119.99771 * 180.02562 * 22 21 19 41 41 H 1.09006 * 113.46245 * 87.44251 * 27 14 13 42 42 H 1.09002 * 113.46955 * 217.87632 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1713 2.0420 -1.1647 5 8 2.6506 3.1595 -1.1713 6 6 1.7576 1.4099 -2.4307 7 6 1.0490 0.1953 -2.5693 8 7 0.8707 -0.0247 -3.8427 9 7 1.4556 1.0185 -4.5691 10 1 1.4692 1.0980 -5.5358 11 6 1.9950 1.8907 -3.7027 12 6 2.3402 2.0443 1.2661 13 6 1.6662 3.4111 1.4500 14 7 2.9246 3.8945 2.0380 15 6 3.2792 4.8465 2.9237 16 8 2.4305 5.5473 3.4329 17 6 4.7303 5.0400 3.2813 18 16 4.8810 6.3833 4.4850 19 6 6.6278 6.3919 4.7166 20 1 7.2474 5.6903 4.1780 21 6 7.2078 7.3039 5.5874 22 7 6.4531 8.1627 6.2398 23 14 9.0595 7.3127 5.8335 24 1 9.6853 8.2314 4.8489 25 1 9.3738 7.7735 7.2098 26 1 9.5914 5.9402 5.6375 27 6 3.6263 2.8862 1.2294 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.7127 -0.4389 -1.7625 34 1 2.5182 2.8013 -3.9545 35 1 2.2580 1.3855 2.1306 36 1 0.8356 3.3940 2.1557 37 1 1.4108 3.8992 0.5095 38 1 5.2952 5.2918 2.3837 39 1 5.1242 4.1196 3.7122 40 1 6.8585 8.8003 6.8481 41 1 3.8877 3.2360 0.2306 42 1 4.4657 2.4220 1.7471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079373772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:27 Heat of formation + Delta-G solvation = 86.772333 kcal Electronic energy + Delta-G solvation = -26385.156293 eV Core-core repulsion = 22496.647677 eV Total energy + Delta-G solvation = -3888.508616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.07493 -40.85569 -38.86936 -37.10455 -36.37746 -32.44643 -32.38078 -31.16433 -30.79437 -29.90175 -27.57934 -25.89755 -25.40104 -24.57618 -23.41352 -22.40486 -21.72813 -19.83353 -19.01087 -18.18998 -17.64588 -17.03525 -16.68131 -16.34081 -15.96936 -15.55072 -15.23511 -14.90750 -14.76370 -14.60128 -14.28384 -13.93699 -13.80912 -13.64488 -13.19329 -12.87147 -12.71133 -12.58796 -12.45418 -12.32594 -12.14319 -11.80082 -11.66714 -11.54178 -11.06790 -11.01755 -10.95432 -10.72257 -10.28806 -10.00308 -9.77174 -9.33207 -9.28942 -9.02146 -8.93905 -8.35325 -8.17622 -6.44663 -6.16979 -3.87116 1.06778 1.67237 2.18697 2.45051 2.97903 3.01337 3.21307 3.25770 3.31090 3.35007 3.69070 4.05583 4.20479 4.24916 4.30438 4.40459 4.46616 4.70930 4.71498 4.83360 4.87051 4.90960 5.02825 5.12165 5.17924 5.24924 5.33138 5.48847 5.55955 5.66462 5.70728 5.73375 5.78798 5.84631 5.98876 6.10237 6.23808 6.42573 6.56344 6.94933 7.04944 7.64300 7.90863 8.00992 8.40144 8.65976 9.28076 10.90479 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023370 B = 0.002158 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.846306 B =12972.969515 C =13445.300455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.088 3.912 3 N -0.596 5.596 4 C 0.596 3.404 5 O -0.532 6.532 6 C -0.294 4.294 7 C 0.054 3.946 8 N -0.298 5.298 9 N -0.464 5.464 10 H 0.445 0.555 11 C 0.137 3.863 12 C 0.109 3.891 13 C 0.098 3.902 14 N -0.644 5.644 15 C 0.565 3.435 16 O -0.517 6.517 17 C -0.142 4.142 18 S -0.061 6.061 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.081 3.919 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.218 0.782 34 H 0.193 0.807 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.119 0.881 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -22.365 -21.301 32.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.035 4.035 3 N -0.328 5.328 4 C 0.386 3.614 5 O -0.410 6.410 6 C -0.309 4.309 7 C -0.133 4.133 8 N -0.119 5.119 9 N -0.169 5.169 10 H 0.289 0.711 11 C -0.016 4.016 12 C 0.005 3.995 13 C -0.027 4.027 14 N -0.383 5.383 15 C 0.355 3.645 16 O -0.391 6.391 17 C -0.293 4.293 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.746 3.254 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.043 4.043 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.210 0.790 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.837 -21.199 -21.088 32.540 hybrid contribution 2.487 -0.219 -0.385 2.526 sum -10.350 -21.417 -21.473 32.045 Atomic orbital electron populations 1.22556 0.95674 1.03053 1.03875 1.22131 0.94570 0.82446 1.04306 1.47525 1.65923 1.14050 1.05304 1.17284 0.77300 0.84545 0.82253 1.90749 1.44510 1.19129 1.86602 1.20265 1.16037 1.00979 0.93654 1.25568 0.96551 0.96209 0.94997 1.77226 1.19911 1.09484 1.05265 1.46308 1.43275 1.17515 1.09814 0.71054 1.23113 0.94242 0.95057 0.89165 1.23076 0.97284 0.93151 0.86038 1.23249 0.89545 0.91118 0.98763 1.49266 1.10431 1.36360 1.42250 1.19848 0.90772 0.76932 0.76954 1.90706 1.52396 1.43655 1.52335 1.23455 0.93995 1.06381 1.05467 1.85384 1.09498 1.38657 1.49898 1.22863 0.91915 1.22692 1.30682 0.90939 1.24997 0.99206 0.94586 0.94860 1.70028 1.35475 1.18611 1.26213 0.86161 0.83176 0.78479 0.77633 1.20288 1.20771 1.19705 1.23774 0.95533 0.86821 0.98175 0.91096 0.91173 0.90706 0.88952 0.89370 0.76607 0.79010 0.85454 0.90683 0.89021 0.89286 0.89355 0.92226 0.86345 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.69 8.66 37.16 0.32 -0.37 16 2 C 0.09 0.37 5.63 -4.04 -0.02 0.35 16 3 N -0.60 -4.59 2.76 -166.99 -0.46 -5.06 16 4 C 0.60 5.77 7.11 -12.52 -0.09 5.68 16 5 O -0.53 -6.94 12.46 5.28 0.07 -6.88 16 6 C -0.29 -2.27 5.93 -105.07 -0.62 -2.89 16 7 C 0.05 0.35 8.37 -16.98 -0.14 0.20 16 8 N -0.30 -2.18 12.63 30.86 0.39 -1.79 16 9 N -0.46 -2.36 7.29 30.85 0.22 -2.14 16 10 H 0.44 0.80 8.96 -182.72 -1.64 -0.84 16 11 C 0.14 0.83 11.83 -16.56 -0.20 0.64 16 12 C 0.11 1.04 4.80 -67.67 -0.32 0.71 16 13 C 0.10 1.28 8.03 -8.51 -0.07 1.22 16 14 N -0.64 -10.54 3.69 -185.07 -0.68 -11.23 16 15 C 0.57 11.98 8.10 -10.99 -0.09 11.89 16 16 O -0.52 -12.95 16.64 5.56 0.09 -12.86 16 17 C -0.14 -3.15 5.98 36.01 0.22 -2.93 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.63 9.50 30.94 0.29 -15.34 16 20 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.70 13.22 55.49 0.73 -25.97 16 23 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.08 1.01 7.78 -8.37 -0.07 0.95 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.33 6.00 -51.93 -0.31 0.01 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.32 4.97 -51.93 -0.26 0.06 16 32 H 0.09 0.25 7.92 -51.93 -0.41 -0.17 16 33 H 0.22 0.87 3.16 -52.49 -0.17 0.70 16 34 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.95 7.95 -51.93 -0.41 0.53 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.30 6.41 -51.93 -0.33 0.97 16 38 H 0.09 1.88 8.14 -51.91 -0.42 1.45 16 39 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.12 1.63 5.28 -51.93 -0.27 1.36 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -39.67 361.03 -8.62 -48.29 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.31 Total: -2.82 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.88 Total: 2.12 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.20 Total: -46.17 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.16 Total: -19.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -39.67 -8.62 -48.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079373772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.063 kcal (2) G-P(sol) polarization free energy of solvation -39.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds