Wall clock time and date at job start Tue Mar 31 2020 20:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00169 * 2 1 4 4 N 1.34774 * 119.99606 * 180.02562 * 2 1 3 5 5 C 1.38905 * 119.99710 * 179.97438 * 4 2 1 6 6 N 1.29516 * 125.26941 * 180.28379 * 5 4 2 7 7 C 1.33636 * 115.66915 * 180.21633 * 6 5 4 8 8 C 1.47201 * 122.50487 * 179.75777 * 7 6 5 9 9 O 1.21633 * 120.00171 * 185.20767 * 8 7 6 10 10 N 1.34780 * 119.99397 * 4.93605 * 8 7 6 11 11 C 1.46490 * 120.00622 * 355.38106 * 10 8 7 12 12 C 1.46504 * 119.99307 * 175.38679 * 10 8 7 13 13 C 1.52995 * 109.47340 * 83.14790 * 12 10 8 14 14 H 1.09010 * 112.96332 * 311.63831 * 13 12 10 15 15 C 1.53943 * 113.76973 * 179.97438 * 13 12 10 16 16 C 1.53950 * 86.28849 * 222.08521 * 15 13 12 17 17 N 1.47575 * 113.77652 * 83.46441 * 13 12 10 18 18 C 1.36943 * 134.49332 * 318.94849 * 17 13 12 19 19 H 1.08004 * 119.99264 * 2.70535 * 18 17 13 20 20 C 1.38808 * 120.00339 * 182.71210 * 18 17 13 21 21 N 1.31625 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47107 * 60.00129 * 22 20 18 24 24 H 1.48496 * 109.47065 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47263 * 299.99967 * 22 20 18 26 26 C 1.34894 * 114.99507 * 359.48518 * 7 6 5 27 27 S 1.70979 * 109.19715 * 0.27325 * 26 7 6 28 28 H 1.09004 * 109.46698 * 270.00461 * 1 2 3 29 29 H 1.08995 * 109.47082 * 29.99702 * 1 2 3 30 30 H 1.08996 * 109.47421 * 150.00122 * 1 2 3 31 31 H 0.97001 * 120.00375 * 359.97438 * 4 2 1 32 32 H 1.09003 * 109.46901 * 58.57877 * 11 10 8 33 33 H 1.08996 * 109.47890 * 178.57637 * 11 10 8 34 34 H 1.08999 * 109.47648 * 298.58557 * 11 10 8 35 35 H 1.09006 * 109.46518 * 203.14402 * 12 10 8 36 36 H 1.09001 * 109.47592 * 323.13878 * 12 10 8 37 37 H 1.08994 * 113.74168 * 336.42652 * 15 13 12 38 38 H 1.09000 * 113.74307 * 107.63957 * 15 13 12 39 39 H 1.09007 * 113.76748 * 137.90498 * 16 15 13 40 40 H 1.09002 * 113.76862 * 269.19120 * 16 15 13 41 41 H 0.96999 * 119.99889 * 180.02562 * 21 20 18 42 42 H 1.08001 * 125.39929 * 180.27283 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5698 -1.1672 -0.0011 6 7 4.3177 -2.2247 -0.0068 7 6 5.6353 -2.0019 -0.0016 8 6 6.6223 -3.0940 -0.0018 9 8 7.8080 -2.8422 0.0987 10 7 6.2115 -4.3733 -0.1077 11 6 4.7801 -4.6844 -0.1207 12 6 7.1967 -5.4528 -0.2096 13 6 7.6806 -5.8356 1.1904 14 1 7.9642 -4.9727 1.7931 15 6 8.7237 -6.9677 1.1984 16 6 7.9542 -7.5327 2.4062 17 7 6.7919 -6.7851 1.8881 18 6 5.4342 -6.9188 2.0068 19 1 4.7770 -6.2442 1.4782 20 6 4.9028 -7.9211 2.8066 21 7 5.7039 -8.7434 3.4505 22 14 3.0508 -8.1030 2.9691 23 1 2.4594 -8.3601 1.6314 24 1 2.7426 -9.2403 3.8729 25 1 2.4782 -6.8537 3.5318 26 6 5.9935 -0.7013 -0.0021 27 16 4.5860 0.2694 -0.0017 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6958 -2.0073 -0.0005 32 1 4.3030 -4.1651 -0.9519 33 1 4.6428 -5.7594 -0.2373 34 1 4.3291 -4.3602 0.8171 35 1 6.7378 -6.3197 -0.6851 36 1 8.0438 -5.1164 -0.8075 37 1 8.6852 -7.6062 0.3159 38 1 9.7332 -6.6327 1.4369 39 1 7.8279 -8.6151 2.3794 40 1 8.3185 -7.1707 3.3676 41 1 5.3326 -9.4441 4.0092 42 1 7.0084 -0.3319 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085690311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:44 Heat of formation + Delta-G solvation = 56.634387 kcal Electronic energy + Delta-G solvation = -27235.299391 eV Core-core repulsion = 23345.483895 eV Total energy + Delta-G solvation = -3889.815496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.82207 -40.15443 -38.58689 -37.52136 -35.24414 -34.93092 -32.16771 -31.17392 -29.43932 -28.72854 -27.75020 -26.21671 -25.07790 -23.24803 -22.95116 -21.87197 -21.29808 -19.22651 -19.00470 -18.16789 -17.46569 -17.10699 -16.77499 -16.31748 -15.99305 -15.54276 -15.23398 -14.84630 -14.64585 -14.32794 -13.93761 -13.64052 -13.40915 -13.25784 -13.09433 -12.84487 -12.78368 -12.45948 -12.23531 -11.84099 -11.38804 -11.35148 -11.23027 -11.04467 -10.91122 -10.67160 -10.55152 -10.48704 -10.01889 -9.90618 -9.63562 -9.51764 -9.46002 -9.21047 -8.72099 -8.50449 -8.03567 -6.77326 -5.69330 -2.99537 0.47636 0.86567 1.63793 1.64857 2.25025 2.34309 3.37578 3.41179 3.44454 3.46968 3.60582 4.09720 4.34768 4.48824 4.65192 4.82372 5.06986 5.22052 5.23586 5.30399 5.45477 5.50669 5.72170 5.80375 5.84628 5.94981 6.03625 6.16821 6.17556 6.32677 6.43543 6.50989 6.55730 6.72795 6.81869 7.07102 7.32302 7.35585 7.42334 7.53202 7.66849 7.81568 8.06983 8.48733 9.12416 9.79412 10.72450 11.48585 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.003752 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.826414 B = 7460.909490 C = 9439.603324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.513 6.513 4 N -0.621 5.621 5 C 0.243 3.757 6 N -0.463 5.463 7 C 0.038 3.962 8 C 0.585 3.415 9 O -0.542 6.542 10 N -0.583 5.583 11 C 0.098 3.902 12 C 0.120 3.880 13 C 0.129 3.871 14 H 0.048 0.952 15 C -0.160 4.160 16 C 0.162 3.838 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.088 0.912 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.903 3.097 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.263 4.263 27 S 0.259 5.741 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.427 0.573 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.252 0.748 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 16.422 -10.071 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.388 6.388 4 N -0.272 5.272 5 C -0.126 4.126 6 N -0.186 5.186 7 C -0.096 4.096 8 C 0.369 3.631 9 O -0.420 6.420 10 N -0.312 5.312 11 C -0.045 4.045 12 C -0.004 4.004 13 C 0.021 3.979 14 H 0.066 0.934 15 C -0.199 4.199 16 C 0.037 3.963 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.106 0.894 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.406 4.406 27 S 0.511 5.489 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.267 0.733 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.457 17.668 -9.908 21.951 hybrid contribution -0.792 -1.400 0.499 1.685 sum -9.249 16.268 -9.409 20.945 Atomic orbital electron populations 1.21856 0.88618 1.06012 1.05933 1.21334 0.91685 0.82122 0.74929 1.90688 1.69604 1.30689 1.47772 1.42907 1.01648 1.11570 1.71033 1.24505 0.89872 0.93739 1.04505 1.67566 1.03394 1.28086 1.19577 1.19953 0.88658 0.93731 1.07258 1.17123 0.86571 0.81879 0.77484 1.90777 1.16282 1.83623 1.51358 1.47605 1.08449 1.05302 1.69857 1.22037 0.79218 1.01209 1.02010 1.22002 0.91265 0.88387 0.98697 1.22594 0.90077 0.93258 0.91987 0.93447 1.23779 0.96521 0.98465 1.01087 1.22120 0.84129 0.98096 0.91976 1.46180 1.00555 1.28754 1.57404 1.19298 0.80366 1.11983 1.23259 0.89424 1.24779 0.97300 0.98964 0.99696 1.69821 1.32767 1.20238 1.34133 0.86340 0.85660 0.77155 0.77498 1.21149 1.21686 1.21421 1.26851 1.07513 0.97633 1.08554 1.84757 0.91471 1.05897 1.66805 0.87688 0.87763 0.89172 0.73323 0.92267 0.90254 0.91598 0.89661 0.90897 0.90784 0.92984 0.91260 0.95842 0.93826 0.79449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 10.30 36.01 0.37 -0.15 16 2 C 0.51 3.99 7.90 -10.99 -0.09 3.90 16 3 O -0.51 -5.75 14.61 5.56 0.08 -5.67 16 4 N -0.62 -5.32 5.40 -11.91 -0.06 -5.38 16 5 C 0.24 2.98 8.36 -87.53 -0.73 2.25 16 6 N -0.46 -6.78 6.73 -10.51 -0.07 -6.85 16 7 C 0.04 0.62 6.52 -84.63 -0.55 0.07 16 8 C 0.58 11.06 7.58 -12.62 -0.10 10.97 16 9 O -0.54 -11.34 16.40 5.25 0.09 -11.25 16 10 N -0.58 -10.88 2.89 -182.94 -0.53 -11.40 16 11 C 0.10 1.68 7.32 59.84 0.44 2.11 16 12 C 0.12 2.27 5.18 -4.04 -0.02 2.25 16 13 C 0.13 2.80 4.47 -66.87 -0.30 2.50 16 14 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 15 C -0.16 -3.17 7.86 -25.80 -0.20 -3.37 16 16 C 0.16 3.95 7.45 -2.97 -0.02 3.93 16 17 N -0.60 -15.44 3.57 -170.69 -0.61 -16.05 16 18 C -0.22 -6.00 10.36 -15.06 -0.16 -6.16 16 19 H 0.09 2.21 3.96 -52.48 -0.21 2.00 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.92 -27.48 11.45 55.49 0.64 -26.85 16 22 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.26 -3.62 10.55 29.55 0.31 -3.31 16 27 S 0.26 3.06 20.29 -107.50 -2.18 0.87 16 28 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.43 2.58 8.82 -40.82 -0.36 2.22 16 32 H 0.06 0.89 6.88 -51.93 -0.36 0.53 16 33 H 0.08 1.42 6.39 -51.93 -0.33 1.09 16 34 H 0.07 1.21 7.01 -51.93 -0.36 0.85 16 35 H 0.09 1.59 7.77 -51.93 -0.40 1.19 16 36 H 0.07 1.30 7.71 -51.93 -0.40 0.90 16 37 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.82 7.28 -51.92 -0.38 1.44 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.19 2.38 8.00 -52.49 -0.42 1.96 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -35.66 360.65 -8.70 -44.36 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.31 Total: 1.50 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.14 Total: 14.59 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.64 Total: -66.54 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.17 Total: -16.92 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.18 Total: 0.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.66 -8.70 -44.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085690311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.996 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds