Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 120.00169 * 2 1 4 4 N 1.34774 * 119.99606 * 180.02562 * 2 1 3 5 5 C 1.38905 * 119.99710 * 179.97438 * 4 2 1 6 6 N 1.29516 * 125.26941 * 180.28379 * 5 4 2 7 7 C 1.33636 * 115.66915 * 180.21633 * 6 5 4 8 8 C 1.47201 * 122.50487 * 179.75777 * 7 6 5 9 9 O 1.21633 * 120.00171 * 185.20767 * 8 7 6 10 10 N 1.34780 * 119.99397 * 4.93605 * 8 7 6 11 11 C 1.46490 * 120.00622 * 355.38106 * 10 8 7 12 12 C 1.46504 * 119.99307 * 175.38679 * 10 8 7 13 13 C 1.52995 * 109.47340 * 83.14790 * 12 10 8 14 14 H 1.09010 * 112.96332 * 311.63831 * 13 12 10 15 15 C 1.53943 * 113.76973 * 179.97438 * 13 12 10 16 16 C 1.53950 * 86.28849 * 222.08521 * 15 13 12 17 17 N 1.47575 * 113.77652 * 83.46441 * 13 12 10 18 18 C 1.36943 * 134.49332 * 318.94849 * 17 13 12 19 19 H 1.08004 * 119.99264 * 2.70535 * 18 17 13 20 20 C 1.38808 * 120.00339 * 182.71210 * 18 17 13 21 21 N 1.31625 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47107 * 60.00129 * 22 20 18 24 24 H 1.48496 * 109.47065 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47263 * 299.99967 * 22 20 18 26 26 C 1.34894 * 114.99507 * 359.48518 * 7 6 5 27 27 S 1.70979 * 109.19715 * 0.27325 * 26 7 6 28 28 H 1.09004 * 109.46698 * 270.00461 * 1 2 3 29 29 H 1.08995 * 109.47082 * 29.99702 * 1 2 3 30 30 H 1.08996 * 109.47421 * 150.00122 * 1 2 3 31 31 H 0.97001 * 120.00375 * 359.97438 * 4 2 1 32 32 H 1.09003 * 109.46901 * 58.57877 * 11 10 8 33 33 H 1.08996 * 109.47890 * 178.57637 * 11 10 8 34 34 H 1.08999 * 109.47648 * 298.58557 * 11 10 8 35 35 H 1.09006 * 109.46518 * 203.14402 * 12 10 8 36 36 H 1.09001 * 109.47592 * 323.13878 * 12 10 8 37 37 H 1.08994 * 113.74168 * 336.42652 * 15 13 12 38 38 H 1.09000 * 113.74307 * 107.63957 * 15 13 12 39 39 H 1.09007 * 113.76748 * 137.90498 * 16 15 13 40 40 H 1.09002 * 113.76862 * 269.19120 * 16 15 13 41 41 H 0.96999 * 119.99889 * 180.02562 * 21 20 18 42 42 H 1.08001 * 125.39929 * 180.27283 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5698 -1.1672 -0.0011 6 7 4.3177 -2.2247 -0.0068 7 6 5.6353 -2.0019 -0.0016 8 6 6.6223 -3.0940 -0.0018 9 8 7.8080 -2.8422 0.0987 10 7 6.2115 -4.3733 -0.1077 11 6 4.7801 -4.6844 -0.1207 12 6 7.1967 -5.4528 -0.2096 13 6 7.6806 -5.8356 1.1904 14 1 7.9642 -4.9727 1.7931 15 6 8.7237 -6.9677 1.1984 16 6 7.9542 -7.5327 2.4062 17 7 6.7919 -6.7851 1.8881 18 6 5.4342 -6.9188 2.0068 19 1 4.7770 -6.2442 1.4782 20 6 4.9028 -7.9211 2.8066 21 7 5.7039 -8.7434 3.4505 22 14 3.0508 -8.1030 2.9691 23 1 2.4594 -8.3601 1.6314 24 1 2.7426 -9.2403 3.8729 25 1 2.4782 -6.8537 3.5318 26 6 5.9935 -0.7013 -0.0021 27 16 4.5860 0.2694 -0.0017 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6958 -2.0073 -0.0005 32 1 4.3030 -4.1651 -0.9519 33 1 4.6428 -5.7594 -0.2373 34 1 4.3291 -4.3602 0.8171 35 1 6.7378 -6.3197 -0.6851 36 1 8.0438 -5.1164 -0.8075 37 1 8.6852 -7.6062 0.3159 38 1 9.7332 -6.6327 1.4369 39 1 7.8279 -8.6151 2.3794 40 1 8.3185 -7.1707 3.3676 41 1 5.3326 -9.4441 4.0092 42 1 7.0084 -0.3319 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085690311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = 32.032045 kcal Electronic energy + Delta-G solvation = -27236.366229 eV Core-core repulsion = 23345.483895 eV Total energy + Delta-G solvation = -3890.882333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81029 -41.17285 -39.98352 -39.12232 -36.43961 -36.04693 -34.22821 -31.86962 -30.40842 -30.15197 -29.65756 -27.61688 -26.31938 -25.23139 -24.27132 -22.84920 -22.41773 -20.90057 -20.27121 -19.34070 -18.65534 -18.46588 -17.85862 -17.34684 -17.14239 -17.00057 -16.65606 -16.56339 -15.85074 -15.57011 -15.30563 -14.94134 -14.79377 -14.70686 -14.29798 -13.90785 -13.64271 -13.41494 -13.24900 -13.16659 -13.06460 -12.91593 -12.88062 -12.67939 -12.47459 -12.28144 -12.19299 -11.79247 -11.47859 -11.35463 -11.23782 -11.11744 -10.77587 -10.71325 -10.47166 -9.70893 -9.33686 -8.83497 -7.81298 -5.13458 -0.53935 -0.07179 0.61924 0.66757 1.45560 1.48423 1.50150 1.50983 1.55498 2.09787 2.28572 2.52150 3.20646 3.35178 3.46324 3.69308 3.94285 3.98979 4.18210 4.28003 4.34488 4.43369 4.46752 4.50075 4.62842 4.65576 4.68113 4.79447 4.89306 4.93006 5.00849 5.05184 5.09998 5.14315 5.36516 5.50941 5.64223 5.72980 5.79489 6.00130 6.34187 6.48291 6.70874 6.99960 7.05939 7.71000 8.67516 9.36905 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.003752 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.826414 B = 7460.909490 C = 9439.603324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.612 5.612 5 C 0.240 3.760 6 N -0.480 5.480 7 C 0.011 3.989 8 C 0.580 3.420 9 O -0.571 6.571 10 N -0.589 5.589 11 C 0.109 3.891 12 C 0.128 3.872 13 C 0.129 3.871 14 H 0.024 0.976 15 C -0.131 4.131 16 C 0.154 3.846 17 N -0.624 5.624 18 C -0.223 4.223 19 H 0.104 0.896 20 C -0.076 4.076 21 N -0.960 5.960 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.302 1.302 25 H -0.280 1.280 26 C -0.263 4.263 27 S 0.300 5.700 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.440 0.560 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.005 0.995 41 H 0.243 0.757 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 17.882 -11.596 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.265 5.265 5 C -0.130 4.130 6 N -0.204 5.204 7 C -0.123 4.123 8 C 0.366 3.634 9 O -0.452 6.452 10 N -0.318 5.318 11 C -0.033 4.033 12 C 0.004 3.996 13 C 0.022 3.978 14 H 0.042 0.958 15 C -0.169 4.169 16 C 0.028 3.972 17 N -0.350 5.350 18 C -0.351 4.351 19 H 0.121 0.879 20 C -0.268 4.268 21 N -0.610 5.610 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.229 1.229 25 H -0.206 1.206 26 C -0.407 4.407 27 S 0.552 5.448 28 H 0.139 0.861 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.282 0.718 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.052 0.948 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.703 19.146 -11.467 24.751 hybrid contribution -0.138 -1.698 0.985 1.968 sum -10.841 17.448 -10.482 23.062 Atomic orbital electron populations 1.21959 0.84487 1.07682 1.07354 1.22333 0.93358 0.81057 0.73203 1.90663 1.70543 1.31901 1.49444 1.43140 1.00058 1.12798 1.70495 1.24793 0.91441 0.93555 1.03167 1.67473 1.02839 1.29111 1.21009 1.19690 0.89132 0.93490 1.10017 1.17532 0.86838 0.82417 0.76605 1.90741 1.17592 1.84138 1.52698 1.47711 1.08928 1.05330 1.69876 1.21948 0.78507 1.00670 1.02186 1.21844 0.92071 0.88903 0.96753 1.22632 0.89919 0.92454 0.92756 0.95813 1.23577 0.97008 0.96988 0.99359 1.22067 0.85299 0.96638 0.93155 1.46572 1.00669 1.29965 1.57790 1.19841 0.81609 1.11431 1.22244 0.87860 1.25643 1.01796 0.99227 1.00155 1.70041 1.34510 1.21057 1.35435 0.85292 0.80457 0.76677 0.77916 1.19140 1.22870 1.20624 1.27064 1.08938 0.97497 1.07193 1.84707 0.89771 1.04595 1.65706 0.86138 0.87047 0.86551 0.71792 0.89986 0.91139 0.93006 0.89152 0.89433 0.88828 0.90265 0.93759 0.97707 0.94795 0.78968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 10.30 71.24 0.73 0.33 16 2 C 0.51 6.59 7.90 87.66 0.69 7.29 16 3 O -0.55 -11.19 14.61 -3.04 -0.04 -11.23 16 4 N -0.61 -8.97 5.40 -309.98 -1.67 -10.64 16 5 C 0.24 5.48 8.36 179.27 1.50 6.98 16 6 N -0.48 -13.49 6.73 -187.15 -1.26 -14.75 16 7 C 0.01 0.35 6.52 40.46 0.26 0.61 16 8 C 0.58 21.85 7.58 86.60 0.66 22.51 16 9 O -0.57 -24.00 16.40 -4.14 -0.07 -24.07 16 10 N -0.59 -21.66 2.89 -850.93 -2.46 -24.12 16 11 C 0.11 3.62 7.32 127.77 0.94 4.56 16 12 C 0.13 4.72 5.18 86.38 0.45 5.17 16 13 C 0.13 5.61 4.47 45.09 0.20 5.81 16 14 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 15 C -0.13 -5.07 7.86 31.25 0.25 -4.82 16 16 C 0.15 7.69 7.45 86.48 0.64 8.33 16 17 N -0.62 -32.30 3.57 -693.93 -2.48 -34.78 16 18 C -0.22 -12.14 10.36 84.03 0.87 -11.27 16 19 H 0.10 5.15 3.96 -2.91 -0.01 5.14 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.96 -58.87 11.45 21.65 0.25 -58.62 16 22 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 C -0.26 -7.08 10.55 67.05 0.71 -6.38 16 27 S 0.30 6.63 20.29 -56.49 -1.15 5.48 16 28 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.44 4.04 8.82 -92.71 -0.82 3.22 16 32 H 0.08 2.33 6.88 -2.39 -0.02 2.31 16 33 H 0.07 2.44 6.39 -2.39 -0.02 2.42 16 34 H 0.05 1.86 7.01 -2.39 -0.02 1.85 16 35 H 0.09 3.25 7.77 -2.38 -0.02 3.24 16 36 H 0.09 2.99 7.71 -2.39 -0.02 2.97 16 37 H 0.09 3.29 8.10 -2.39 -0.02 3.27 16 38 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.04 2.41 7.28 -2.38 -0.02 2.39 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.19 4.81 8.00 -2.91 -0.02 4.79 16 Total: -1.00 -79.13 360.65 1.77 -77.37 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.26 Total: 13.31 kcal Atomic # 6 Polarization: 26.89 SS G_CDS: 8.36 Total: 35.26 kcal Atomic # 7 Polarization: -135.29 SS G_CDS: -7.63 Total: -142.92 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.11 Total: -35.30 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.15 Total: 5.48 kcal Total: -79.13 1.77 -77.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085690311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.398 kcal (2) G-P(sol) polarization free energy of solvation -79.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds