Wall clock time and date at job start Tue Mar 31 2020 20:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00059 * 2 1 4 4 N 1.34778 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.38896 * 119.99982 * 180.02562 * 4 2 1 6 6 N 1.29518 * 125.26661 * 180.28480 * 5 4 2 7 7 C 1.33640 * 115.66618 * 180.20788 * 6 5 4 8 8 C 1.47194 * 122.50454 * 179.75159 * 7 6 5 9 9 O 1.21645 * 120.00253 * 185.26427 * 8 7 6 10 10 N 1.34780 * 119.99605 * 5.26932 * 8 7 6 11 11 C 1.46495 * 120.00334 * 4.78666 * 10 8 7 12 12 C 1.46504 * 119.99842 * 184.79531 * 10 8 7 13 13 C 1.53003 * 109.46703 * 274.03817 * 12 10 8 14 14 H 1.08995 * 112.74179 * 316.41278 * 13 12 10 15 15 C 1.53492 * 113.52230 * 87.21292 * 13 12 10 16 16 C 1.53244 * 83.43093 * 140.68369 * 15 13 12 17 17 N 1.47064 * 88.07921 * 334.10271 * 16 15 13 18 18 C 1.36942 * 136.05225 * 207.19737 * 17 16 15 19 19 H 1.08002 * 119.99526 * 174.36735 * 18 17 16 20 20 C 1.38808 * 120.00257 * 354.09692 * 18 17 16 21 21 N 1.31624 * 119.99982 * 0.27412 * 20 18 17 22 22 Si 1.86804 * 120.00243 * 180.27050 * 20 18 17 23 23 H 1.48497 * 109.46741 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46905 * 119.99783 * 22 20 18 25 25 H 1.48499 * 109.47106 * 240.00283 * 22 20 18 26 26 C 1.34891 * 114.99541 * 359.48822 * 7 6 5 27 27 S 1.70982 * 109.19949 * 0.26641 * 26 7 6 28 28 H 1.08997 * 109.47227 * 240.00114 * 1 2 3 29 29 H 1.09009 * 109.47235 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47692 * 119.99473 * 1 2 3 31 31 H 0.96996 * 119.99663 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47442 * 174.79788 * 11 10 8 33 33 H 1.08997 * 109.47682 * 294.80697 * 11 10 8 34 34 H 1.09000 * 109.46666 * 54.80591 * 11 10 8 35 35 H 1.08996 * 109.46975 * 154.03773 * 12 10 8 36 36 H 1.08997 * 109.47148 * 34.03341 * 12 10 8 37 37 H 1.09000 * 114.20287 * 254.44155 * 15 13 12 38 38 H 1.09001 * 114.20816 * 27.07255 * 15 13 12 39 39 H 1.08996 * 113.38354 * 219.28751 * 16 15 13 40 40 H 1.09004 * 113.46897 * 88.92878 * 16 15 13 41 41 H 0.96991 * 120.00253 * 180.02562 * 21 20 18 42 42 H 1.08002 * 125.40312 * 180.27306 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5698 -1.1672 0.0000 6 7 4.3176 -2.2246 -0.0057 7 6 5.6353 -2.0018 0.0005 8 6 6.6222 -3.0939 0.0007 9 8 7.8079 -2.8421 0.1031 10 7 6.2121 -4.3727 -0.1126 11 6 4.7960 -4.6704 -0.3411 12 6 7.1825 -5.4652 -0.0070 13 6 7.8125 -5.7218 -1.3775 14 1 7.0806 -5.7177 -2.1851 15 6 9.0406 -4.8457 -1.6609 16 6 9.5895 -6.1278 -2.2960 17 7 8.7051 -6.8904 -1.4021 18 6 8.7126 -8.1376 -0.8367 19 1 7.9486 -8.4121 -0.1244 20 6 9.6987 -9.0510 -1.1833 21 7 10.6298 -8.7164 -2.0514 22 14 9.7045 -10.7549 -0.4178 23 1 8.5596 -10.8802 0.5196 24 1 9.5825 -11.7783 -1.4869 25 1 10.9754 -10.9609 0.3221 26 6 5.9934 -0.7013 0.0008 27 16 4.5859 0.2695 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 1.6958 -2.0072 -0.0005 32 1 4.6705 -5.7419 -0.4970 33 1 4.2145 -4.3588 0.5265 34 1 4.4494 -4.1319 -1.2232 35 1 6.6771 -6.3682 0.3354 36 1 7.9609 -5.1922 0.7053 37 1 8.8586 -4.0365 -2.3681 38 1 9.5764 -4.5249 -0.7676 39 1 10.6494 -6.2887 -2.0989 40 1 9.3357 -6.2328 -3.3509 41 1 11.3186 -9.3547 -2.2939 42 1 7.0083 -0.3318 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085690312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:47 Heat of formation + Delta-G solvation = 57.971277 kcal Electronic energy + Delta-G solvation = -26615.547518 eV Core-core repulsion = 22725.789994 eV Total energy + Delta-G solvation = -3889.757524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95290 -40.27688 -38.73410 -37.61126 -35.37654 -35.14808 -32.12533 -31.29297 -29.55614 -28.70678 -27.79700 -26.43855 -25.14079 -23.33139 -22.90681 -21.96391 -21.34207 -19.33112 -19.03101 -18.31593 -17.59506 -17.24513 -16.67261 -16.44975 -16.19513 -15.58703 -15.44289 -14.83744 -14.69140 -14.31257 -13.90024 -13.80337 -13.43898 -13.39834 -13.24665 -12.95539 -12.71582 -12.59133 -12.35074 -11.91246 -11.83610 -11.46211 -11.35981 -11.00215 -10.80732 -10.69874 -10.65553 -10.32397 -10.04732 -9.81202 -9.68322 -9.65189 -9.62591 -9.29819 -8.72471 -8.60499 -8.12223 -6.78229 -5.70171 -3.01882 0.36214 0.74170 1.51487 1.53308 2.10350 2.20968 3.31170 3.42268 3.46860 3.49202 3.49833 3.96210 4.19715 4.51618 4.57162 4.66663 4.95097 5.10358 5.19099 5.30966 5.35731 5.47853 5.53613 5.67106 5.75069 5.77283 6.00837 6.08560 6.12167 6.16168 6.30699 6.51215 6.69264 6.78664 6.91785 6.94031 7.19446 7.25642 7.35656 7.57962 7.67754 7.68317 8.05494 8.39991 9.10282 9.77238 10.74627 11.48121 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025939 B = 0.002364 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.215684 B =11842.346878 C =12554.979994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.510 6.510 4 N -0.622 5.622 5 C 0.241 3.759 6 N -0.468 5.468 7 C 0.036 3.964 8 C 0.584 3.416 9 O -0.523 6.523 10 N -0.595 5.595 11 C 0.099 3.901 12 C 0.118 3.882 13 C 0.130 3.870 14 H 0.039 0.961 15 C -0.151 4.151 16 C 0.155 3.845 17 N -0.602 5.602 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C -0.260 4.260 27 S 0.264 5.736 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.426 0.574 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.252 0.748 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 19.475 4.263 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.384 6.384 4 N -0.273 5.273 5 C -0.128 4.128 6 N -0.191 5.191 7 C -0.099 4.099 8 C 0.369 3.631 9 O -0.399 6.399 10 N -0.327 5.327 11 C -0.044 4.044 12 C -0.005 4.005 13 C 0.022 3.978 14 H 0.057 0.943 15 C -0.189 4.189 16 C 0.029 3.971 17 N -0.328 5.328 18 C -0.343 4.343 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.565 5.565 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.402 4.402 27 S 0.515 5.485 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -22.540 20.536 4.374 30.805 hybrid contribution 0.230 -2.409 0.155 2.425 sum -22.310 18.128 4.529 29.101 Atomic orbital electron populations 1.21892 0.88569 1.06772 1.05346 1.21345 0.91692 0.82125 0.74993 1.90700 1.69639 1.30680 1.47403 1.42838 1.01595 1.11508 1.71323 1.24479 0.89808 0.93920 1.04608 1.67498 1.03409 1.28277 1.19962 1.19976 0.88581 0.93804 1.07517 1.17111 0.86644 0.81732 0.77648 1.90837 1.15868 1.83090 1.50108 1.47712 1.09337 1.05573 1.70075 1.21824 0.80493 1.00436 1.01692 1.21968 0.91411 0.87378 0.99770 1.22445 0.93168 0.88414 0.93754 0.94322 1.23552 0.98332 0.96087 1.00932 1.21938 0.97002 0.85777 0.92373 1.45651 1.21517 1.11646 1.54014 1.18927 1.10290 0.87069 1.18017 0.90236 1.24819 0.98275 0.98173 0.99284 1.69868 1.16203 1.34613 1.35813 0.86074 0.77363 0.84316 0.78188 1.20485 1.21825 1.21737 1.26902 1.07676 0.97652 1.08016 1.84850 0.91384 1.05654 1.66574 0.88354 0.87797 0.88315 0.73482 0.91608 0.91576 0.92127 0.90598 0.89895 0.93327 0.89946 0.91820 0.95925 0.93762 0.79291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.19 10.32 36.00 0.37 0.18 16 2 C 0.51 2.93 7.90 -10.99 -0.09 2.85 16 3 O -0.51 -4.84 14.59 5.56 0.08 -4.76 16 4 N -0.62 -3.75 5.40 -11.91 -0.06 -3.81 16 5 C 0.24 2.38 8.36 -87.54 -0.73 1.64 16 6 N -0.47 -5.54 6.81 -10.51 -0.07 -5.61 16 7 C 0.04 0.50 6.48 -84.63 -0.55 -0.05 16 8 C 0.58 9.98 7.61 -12.62 -0.10 9.89 16 9 O -0.52 -10.37 14.82 5.24 0.08 -10.29 16 10 N -0.60 -9.80 2.88 -182.93 -0.53 -10.33 16 11 C 0.10 1.27 9.01 59.84 0.54 1.81 16 12 C 0.12 2.27 5.32 -4.04 -0.02 2.25 16 13 C 0.13 2.87 4.29 -72.39 -0.31 2.56 16 14 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.15 -3.32 6.79 -26.35 -0.18 -3.50 16 16 C 0.15 3.96 7.26 -8.64 -0.06 3.90 16 17 N -0.60 -16.11 3.65 -177.16 -0.65 -16.75 16 18 C -0.22 -6.14 10.55 -15.06 -0.16 -6.30 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -28.21 11.66 55.49 0.65 -27.56 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 C -0.26 -3.17 10.55 29.54 0.31 -2.86 16 27 S 0.26 2.67 20.29 -107.50 -2.18 0.49 16 28 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.10 0.14 8.12 -51.92 -0.42 -0.28 16 30 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.43 1.31 8.82 -40.82 -0.36 0.95 16 32 H 0.07 0.81 7.79 -51.93 -0.40 0.41 16 33 H 0.07 0.77 7.04 -51.93 -0.37 0.41 16 34 H 0.06 0.75 7.27 -51.93 -0.38 0.38 16 35 H 0.08 1.43 7.88 -51.93 -0.41 1.02 16 36 H 0.08 1.74 7.34 -51.93 -0.38 1.36 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.89 7.63 -51.93 -0.40 1.49 16 39 H 0.06 1.77 7.39 -51.93 -0.38 1.39 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.19 2.18 8.00 -52.49 -0.42 1.76 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -36.69 365.03 -8.86 -45.55 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.58 Total: -1.93 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -1.07 Total: 12.02 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.66 Total: -64.07 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.16 Total: -15.05 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.18 Total: 0.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.69 -8.86 -45.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085690312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.517 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds