Wall clock time and date at job start Tue Mar 31 2020 20:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00059 * 2 1 4 4 N 1.34778 * 120.00033 * 180.02562 * 2 1 3 5 5 C 1.38896 * 119.99982 * 180.02562 * 4 2 1 6 6 N 1.29518 * 125.26661 * 180.28480 * 5 4 2 7 7 C 1.33640 * 115.66618 * 180.20788 * 6 5 4 8 8 C 1.47194 * 122.50454 * 179.75159 * 7 6 5 9 9 O 1.21645 * 120.00253 * 185.26427 * 8 7 6 10 10 N 1.34780 * 119.99605 * 5.26932 * 8 7 6 11 11 C 1.46495 * 120.00334 * 4.78666 * 10 8 7 12 12 C 1.46504 * 119.99842 * 184.79531 * 10 8 7 13 13 C 1.53003 * 109.46703 * 274.03817 * 12 10 8 14 14 H 1.08995 * 112.74179 * 316.41278 * 13 12 10 15 15 C 1.53492 * 113.52230 * 87.21292 * 13 12 10 16 16 C 1.53244 * 83.43093 * 140.68369 * 15 13 12 17 17 N 1.47064 * 88.07921 * 334.10271 * 16 15 13 18 18 C 1.36942 * 136.05225 * 207.19737 * 17 16 15 19 19 H 1.08002 * 119.99526 * 174.36735 * 18 17 16 20 20 C 1.38808 * 120.00257 * 354.09692 * 18 17 16 21 21 N 1.31624 * 119.99982 * 0.27412 * 20 18 17 22 22 Si 1.86804 * 120.00243 * 180.27050 * 20 18 17 23 23 H 1.48497 * 109.46741 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46905 * 119.99783 * 22 20 18 25 25 H 1.48499 * 109.47106 * 240.00283 * 22 20 18 26 26 C 1.34891 * 114.99541 * 359.48822 * 7 6 5 27 27 S 1.70982 * 109.19949 * 0.26641 * 26 7 6 28 28 H 1.08997 * 109.47227 * 240.00114 * 1 2 3 29 29 H 1.09009 * 109.47235 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47692 * 119.99473 * 1 2 3 31 31 H 0.96996 * 119.99663 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47442 * 174.79788 * 11 10 8 33 33 H 1.08997 * 109.47682 * 294.80697 * 11 10 8 34 34 H 1.09000 * 109.46666 * 54.80591 * 11 10 8 35 35 H 1.08996 * 109.46975 * 154.03773 * 12 10 8 36 36 H 1.08997 * 109.47148 * 34.03341 * 12 10 8 37 37 H 1.09000 * 114.20287 * 254.44155 * 15 13 12 38 38 H 1.09001 * 114.20816 * 27.07255 * 15 13 12 39 39 H 1.08996 * 113.38354 * 219.28751 * 16 15 13 40 40 H 1.09004 * 113.46897 * 88.92878 * 16 15 13 41 41 H 0.96991 * 120.00253 * 180.02562 * 21 20 18 42 42 H 1.08002 * 125.40312 * 180.27306 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5698 -1.1672 0.0000 6 7 4.3176 -2.2246 -0.0057 7 6 5.6353 -2.0018 0.0005 8 6 6.6222 -3.0939 0.0007 9 8 7.8079 -2.8421 0.1031 10 7 6.2121 -4.3727 -0.1126 11 6 4.7960 -4.6704 -0.3411 12 6 7.1825 -5.4652 -0.0070 13 6 7.8125 -5.7218 -1.3775 14 1 7.0806 -5.7177 -2.1851 15 6 9.0406 -4.8457 -1.6609 16 6 9.5895 -6.1278 -2.2960 17 7 8.7051 -6.8904 -1.4021 18 6 8.7126 -8.1376 -0.8367 19 1 7.9486 -8.4121 -0.1244 20 6 9.6987 -9.0510 -1.1833 21 7 10.6298 -8.7164 -2.0514 22 14 9.7045 -10.7549 -0.4178 23 1 8.5596 -10.8802 0.5196 24 1 9.5825 -11.7783 -1.4869 25 1 10.9754 -10.9609 0.3221 26 6 5.9934 -0.7013 0.0008 27 16 4.5859 0.2695 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 1.6958 -2.0072 -0.0005 32 1 4.6705 -5.7419 -0.4970 33 1 4.2145 -4.3588 0.5265 34 1 4.4494 -4.1319 -1.2232 35 1 6.6771 -6.3682 0.3354 36 1 7.9609 -5.1922 0.7053 37 1 8.8586 -4.0365 -2.3681 38 1 9.5764 -4.5249 -0.7676 39 1 10.6494 -6.2887 -2.0989 40 1 9.3357 -6.2328 -3.3509 41 1 11.3186 -9.3547 -2.2939 42 1 7.0083 -0.3318 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085690312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:46 Heat of formation + Delta-G solvation = 32.516114 kcal Electronic energy + Delta-G solvation = -26616.651336 eV Core-core repulsion = 22725.789994 eV Total energy + Delta-G solvation = -3890.861343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78992 -41.16237 -40.12348 -39.14931 -36.52515 -36.01816 -34.27004 -31.83449 -30.29868 -30.07180 -29.90371 -27.56651 -26.25765 -25.38927 -24.17761 -22.83309 -22.39686 -21.02954 -20.23551 -19.30914 -18.70826 -18.38953 -17.83559 -17.42997 -17.13195 -16.99117 -16.78551 -16.36345 -15.80762 -15.58340 -15.35735 -15.07209 -14.82729 -14.37765 -14.08907 -13.86707 -13.84176 -13.47764 -13.39906 -13.27076 -13.11153 -13.01275 -12.85314 -12.64007 -12.56095 -12.20814 -12.15799 -11.84103 -11.64383 -11.31204 -11.16980 -11.11029 -10.87061 -10.75814 -10.44143 -9.68420 -9.32740 -8.91458 -7.89857 -5.23973 -0.50142 -0.03723 0.65008 0.70259 1.45633 1.47947 1.51408 1.53406 1.57930 2.03959 2.32032 2.49290 3.20338 3.32056 3.45672 3.73049 3.87553 4.02564 4.20741 4.24164 4.34773 4.39456 4.41289 4.53996 4.56662 4.67201 4.69521 4.86060 4.87750 4.91005 5.03349 5.06137 5.11403 5.18027 5.21654 5.46400 5.52158 5.70647 5.82206 5.91458 6.34931 6.50588 6.76110 6.89862 7.10574 7.60203 8.62133 9.29438 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.025939 B = 0.002364 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.215684 B =11842.346878 C =12554.979994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.510 3.490 3 O -0.549 6.549 4 N -0.610 5.610 5 C 0.244 3.756 6 N -0.475 5.475 7 C 0.016 3.984 8 C 0.579 3.421 9 O -0.561 6.561 10 N -0.596 5.596 11 C 0.101 3.899 12 C 0.133 3.867 13 C 0.137 3.863 14 H 0.047 0.953 15 C -0.126 4.126 16 C 0.152 3.848 17 N -0.628 5.628 18 C -0.222 4.222 19 H 0.093 0.907 20 C -0.074 4.074 21 N -0.958 5.958 22 Si 0.982 3.018 23 H -0.259 1.259 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.266 4.266 27 S 0.293 5.707 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.442 0.558 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.017 0.983 41 H 0.247 0.753 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.934 19.891 5.027 33.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.263 5.263 5 C -0.126 4.126 6 N -0.199 5.199 7 C -0.118 4.118 8 C 0.366 3.634 9 O -0.440 6.440 10 N -0.327 5.327 11 C -0.041 4.041 12 C 0.009 3.991 13 C 0.030 3.970 14 H 0.065 0.935 15 C -0.165 4.165 16 C 0.026 3.974 17 N -0.354 5.354 18 C -0.349 4.349 19 H 0.111 0.889 20 C -0.266 4.266 21 N -0.607 5.607 22 Si 0.810 3.190 23 H -0.183 1.183 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.409 4.409 27 S 0.545 5.455 28 H 0.141 0.859 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.284 0.716 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -26.368 20.960 5.150 34.075 hybrid contribution 1.259 -2.377 -0.097 2.691 sum -25.110 18.584 5.053 31.645 Atomic orbital electron populations 1.21981 0.84480 1.07541 1.07569 1.22336 0.93350 0.81116 0.73239 1.90680 1.70600 1.32074 1.49249 1.43026 0.99868 1.12764 1.70594 1.24730 0.91405 0.93414 1.03025 1.67429 1.02445 1.28825 1.21172 1.19611 0.89158 0.93139 1.09922 1.17564 0.86828 0.82377 0.76676 1.90807 1.17619 1.83758 1.51810 1.47746 1.10234 1.04783 1.69901 1.21977 0.78337 1.01045 1.02698 1.21544 0.91663 0.88642 0.97267 1.22486 0.92920 0.86043 0.95535 0.93543 1.23289 0.97725 0.95146 1.00300 1.21887 0.95327 0.87870 0.92282 1.45963 1.23125 1.12235 1.54072 1.19396 1.10104 0.87661 1.17784 0.88947 1.25750 0.98202 1.02335 1.00341 1.70069 1.17089 1.35760 1.37798 0.84947 0.77605 0.79040 0.77374 1.18264 1.22000 1.22192 1.27053 1.08842 0.97765 1.07262 1.84866 0.89955 1.04880 1.65788 0.85934 0.87811 0.85954 0.71567 0.90879 0.90047 0.91427 0.89813 0.91987 0.91413 0.91013 0.95012 0.96512 0.94375 0.79420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.24 10.32 71.23 0.74 0.98 16 2 C 0.51 4.38 7.90 87.66 0.69 5.08 16 3 O -0.55 -9.34 14.59 -3.02 -0.04 -9.38 16 4 N -0.61 -5.52 5.40 -309.99 -1.67 -7.20 16 5 C 0.24 4.29 8.36 179.27 1.50 5.79 16 6 N -0.47 -10.36 6.81 -187.17 -1.27 -11.63 16 7 C 0.02 0.44 6.48 40.45 0.26 0.70 16 8 C 0.58 19.65 7.61 86.60 0.66 20.31 16 9 O -0.56 -22.64 14.82 -4.17 -0.06 -22.70 16 10 N -0.60 -19.04 2.88 -850.92 -2.45 -21.49 16 11 C 0.10 2.39 9.01 127.77 1.15 3.54 16 12 C 0.13 5.07 5.32 86.38 0.46 5.53 16 13 C 0.14 6.02 4.29 41.79 0.18 6.20 16 14 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.13 -5.65 6.79 30.84 0.21 -5.44 16 16 C 0.15 8.05 7.26 83.10 0.60 8.65 16 17 N -0.63 -34.00 3.65 -714.41 -2.61 -36.61 16 18 C -0.22 -12.65 10.55 84.03 0.89 -11.77 16 19 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 20 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.96 -60.54 11.66 21.65 0.25 -60.29 16 22 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 26 C -0.27 -6.36 10.55 67.05 0.71 -5.65 16 27 S 0.29 5.52 20.29 -56.49 -1.15 4.38 16 28 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.10 -0.06 8.12 -2.38 -0.02 -0.08 16 30 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 31 H 0.44 1.11 8.82 -92.71 -0.82 0.29 16 32 H 0.07 1.62 7.79 -2.39 -0.02 1.60 16 33 H 0.08 1.69 7.04 -2.39 -0.02 1.67 16 34 H 0.07 1.52 7.27 -2.39 -0.02 1.50 16 35 H 0.08 3.05 7.88 -2.39 -0.02 3.03 16 36 H 0.06 2.63 7.34 -2.39 -0.02 2.62 16 37 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.07 3.38 7.63 -2.39 -0.02 3.36 16 39 H 0.03 1.85 7.39 -2.39 -0.02 1.83 16 40 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.25 15.11 8.31 -92.72 -0.77 14.34 16 42 H 0.19 4.39 8.00 -2.91 -0.02 4.37 16 Total: -1.00 -81.46 365.03 1.78 -79.68 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.24 Total: 6.50 kcal Atomic # 6 Polarization: 21.54 SS G_CDS: 8.51 Total: 30.05 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -7.75 Total: -137.20 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.11 Total: -32.08 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -1.15 Total: 4.38 kcal Total: -81.46 1.78 -79.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085690312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.194 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds