Wall clock time and date at job start Tue Mar 31 2020 20:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35657 * 116.99948 * 2 1 4 4 C 1.38637 * 120.14372 * 359.97397 * 3 2 1 5 5 C 1.38207 * 120.06998 * 180.02562 * 4 3 2 6 6 Cl 1.73601 * 119.82006 * 179.97438 * 5 4 3 7 7 C 1.38700 * 120.36547 * 359.97438 * 5 4 3 8 8 C 1.37734 * 120.28233 * 359.68467 * 7 5 4 9 9 C 1.39734 * 119.92048 * 0.61359 * 8 7 5 10 10 C 1.47478 * 120.17772 * 179.67688 * 9 8 7 11 11 O 1.21597 * 120.00019 * 138.45755 * 10 9 8 12 12 N 1.34779 * 120.00096 * 318.73271 * 10 9 8 13 13 C 1.46498 * 119.99851 * 3.54365 * 12 10 9 14 14 C 1.46502 * 119.99931 * 183.53669 * 12 10 9 15 15 C 1.53006 * 109.46722 * 83.22462 * 14 12 10 16 16 H 1.08992 * 112.96807 * 312.56052 * 15 14 12 17 17 C 1.53943 * 113.76362 * 180.88028 * 15 14 12 18 18 C 1.53952 * 86.28896 * 222.09209 * 17 15 14 19 19 N 1.47577 * 113.76513 * 84.38972 * 15 14 12 20 20 C 1.36940 * 134.49515 * 318.93485 * 19 15 14 21 21 H 1.07997 * 119.99989 * 330.30333 * 20 19 15 22 22 C 1.38808 * 120.00224 * 150.30544 * 20 19 15 23 23 N 1.31618 * 120.00284 * 172.59474 * 22 20 19 24 24 Si 1.86799 * 119.99879 * 352.59100 * 22 20 19 25 25 H 1.48499 * 109.47215 * 87.05870 * 24 22 20 26 26 H 1.48498 * 109.47383 * 207.05971 * 24 22 20 27 27 H 1.48504 * 109.47295 * 327.06167 * 24 22 20 28 28 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47205 * 300.00404 * 1 2 3 30 30 H 1.09004 * 109.46405 * 60.00247 * 1 2 3 31 31 H 1.07994 * 119.96602 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.85815 * 179.97438 * 7 5 4 33 33 H 1.08003 * 120.03724 * 180.29929 * 8 7 5 34 34 H 1.09001 * 109.47560 * 84.63445 * 13 12 10 35 35 H 1.09002 * 109.46662 * 204.64196 * 13 12 10 36 36 H 1.09000 * 109.47063 * 324.63295 * 13 12 10 37 37 H 1.08999 * 109.47188 * 203.22214 * 14 12 10 38 38 H 1.08999 * 109.47277 * 323.22957 * 14 12 10 39 39 H 1.08994 * 113.74568 * 336.43707 * 17 15 14 40 40 H 1.08998 * 113.74094 * 107.64801 * 17 15 14 41 41 H 1.09000 * 113.76589 * 137.90463 * 18 17 15 42 42 H 1.08999 * 113.76851 * 269.19741 * 18 17 15 43 43 H 0.96998 * 120.00006 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6039 -0.0011 6 17 0.9735 5.0581 -0.0024 7 6 3.3064 3.6836 -0.0005 8 6 4.0681 2.5361 0.0071 9 6 3.4446 1.2856 0.0013 10 6 4.2547 0.0532 0.0023 11 8 3.9268 -0.8894 0.6969 12 7 5.3615 -0.0262 -0.7627 13 6 5.8032 1.1376 -1.5350 14 6 6.1230 -1.2764 -0.8216 15 6 5.4805 -2.2171 -1.8431 16 1 4.3998 -2.2971 -1.7268 17 6 6.1932 -3.5758 -1.9693 18 6 5.9979 -3.4242 -3.4889 19 7 5.9153 -1.9732 -3.2321 20 6 6.1484 -0.8512 -3.9817 21 1 5.5985 0.0563 -3.7809 22 6 7.0915 -0.8802 -4.9999 23 7 7.2136 0.1472 -5.8134 24 14 8.1875 -2.3775 -5.2152 25 1 7.5007 -3.3741 -6.0756 26 1 9.4643 -1.9686 -5.8538 27 1 8.4689 -2.9802 -3.8875 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8901 31 1 0.2141 2.3188 -0.0006 32 1 3.7894 4.6496 -0.0014 33 1 5.1461 2.6027 0.0124 34 1 6.4078 1.7863 -0.9011 35 1 6.3974 0.8046 -2.3860 36 1 4.9329 1.6878 -1.8928 37 1 7.1495 -1.0629 -1.1197 38 1 6.1206 -1.7500 0.1601 39 1 7.2372 -3.5545 -1.6568 40 1 5.6362 -4.4056 -1.5343 41 1 6.8687 -3.7176 -4.0752 42 1 5.0697 -3.8603 -3.8582 43 1 7.8723 0.1267 -6.5251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085786821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:53 Heat of formation + Delta-G solvation = 28.421589 kcal Electronic energy + Delta-G solvation = -27758.978464 eV Core-core repulsion = 23833.603112 eV Total energy + Delta-G solvation = -3925.375352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74074 -39.20827 -38.03266 -37.71027 -36.45567 -34.92225 -32.37007 -31.50360 -30.45651 -28.90399 -28.05297 -27.34540 -26.22421 -24.00057 -23.19788 -22.57555 -22.22027 -19.74867 -19.00891 -18.11621 -17.18926 -16.98100 -16.64662 -16.08053 -15.75822 -15.52807 -15.26754 -14.93215 -14.62820 -14.25531 -13.99519 -13.52714 -13.46067 -13.39428 -12.94527 -12.70229 -12.49222 -12.36240 -12.07829 -12.01437 -11.71213 -11.51520 -11.38851 -11.28501 -11.16223 -11.06965 -10.89041 -10.83430 -10.40858 -10.27177 -9.71483 -9.46885 -9.38678 -9.04686 -8.65731 -8.43872 -8.12125 -6.93495 -5.97909 -3.38803 0.66205 1.13378 1.81000 2.89464 3.07754 3.29630 3.33477 3.43052 3.46612 3.68164 4.50099 4.51320 4.61405 4.72143 4.80352 4.82827 4.99553 5.02495 5.24041 5.26188 5.31034 5.38620 5.40475 5.67196 5.72242 5.75709 5.86926 5.91195 5.95730 6.01966 6.04799 6.16502 6.24564 6.33302 6.40724 6.45075 6.49250 6.59080 6.91620 7.12496 7.16537 7.45834 7.82245 8.31302 8.53551 8.66476 9.61601 10.38870 11.17994 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.003466 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.903499 B = 8077.352689 C = 8983.008868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.286 6.286 3 C 0.191 3.809 4 C -0.213 4.213 5 C 0.023 3.977 6 Cl -0.067 7.067 7 C -0.157 4.157 8 C -0.039 4.039 9 C -0.152 4.152 10 C 0.560 3.440 11 O -0.532 6.532 12 N -0.591 5.591 13 C 0.058 3.942 14 C 0.122 3.878 15 C 0.135 3.865 16 H 0.057 0.943 17 C -0.146 4.146 18 C 0.094 3.906 19 N -0.619 5.619 20 C -0.233 4.233 21 H 0.092 0.908 22 C 0.027 3.973 23 N -0.916 5.916 24 Si 0.896 3.104 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.267 1.267 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.046 0.954 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 5.570 13.247 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.197 6.197 3 C 0.143 3.857 4 C -0.233 4.233 5 C -0.004 4.004 6 Cl -0.038 7.038 7 C -0.176 4.176 8 C -0.057 4.057 9 C -0.156 4.156 10 C 0.348 3.652 11 O -0.410 6.410 12 N -0.322 5.322 13 C -0.085 4.085 14 C -0.001 4.001 15 C 0.028 3.972 16 H 0.074 0.926 17 C -0.185 4.185 18 C -0.030 4.030 19 N -0.347 5.347 20 C -0.359 4.359 21 H 0.109 0.891 22 C -0.172 4.172 23 N -0.559 5.559 24 Si 0.728 3.272 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.192 1.192 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.849 5.262 13.325 17.385 hybrid contribution 0.076 -0.365 -0.593 0.701 sum -9.773 4.896 12.731 16.780 Atomic orbital electron populations 1.23184 0.78230 1.04554 1.01318 1.86293 1.21299 1.25229 1.86868 1.18749 0.90682 0.84409 0.91887 1.20985 1.00799 0.90331 1.11143 1.20783 0.91911 0.87085 1.00613 1.98378 1.72487 1.36260 1.96629 1.20885 0.91226 0.99712 1.05738 1.21465 1.01053 0.89731 0.93479 1.19442 0.90887 0.94969 1.10337 1.17884 0.80587 0.86531 0.80199 1.90762 1.69835 1.38611 1.41795 1.47622 1.25889 1.13873 1.44839 1.22488 1.00916 0.87568 0.97481 1.21833 0.95465 0.83681 0.99151 1.22684 0.96925 0.91735 0.85892 0.92581 1.23573 1.00690 0.96934 0.97325 1.22895 0.98340 0.87319 0.94438 1.46282 1.80153 1.00529 1.07768 1.18649 1.15777 0.89234 1.12271 0.89069 1.25128 0.97341 0.96759 0.97996 1.69730 1.37001 1.30466 1.18737 0.86684 0.80050 0.82742 0.77702 1.21611 1.23218 1.19247 0.87755 0.92444 0.92379 0.83946 0.84149 0.83047 0.93533 0.86513 0.91594 0.89479 0.90631 0.90269 0.92205 0.93645 0.94235 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.21 16 2 O -0.29 -4.32 9.31 -33.86 -0.32 -4.64 16 3 C 0.19 2.79 6.67 -38.70 -0.26 2.53 16 4 C -0.21 -2.52 8.80 -39.45 -0.35 -2.87 16 5 C 0.02 0.26 6.32 -39.42 -0.25 0.01 16 6 Cl -0.07 -0.66 28.94 -51.86 -1.50 -2.16 16 7 C -0.16 -1.72 9.80 -39.59 -0.39 -2.11 16 8 C -0.04 -0.48 7.64 -39.21 -0.30 -0.78 16 9 C -0.15 -2.35 5.15 -104.84 -0.54 -2.89 16 10 C 0.56 10.14 7.07 -12.49 -0.09 10.05 16 11 O -0.53 -11.02 15.86 -9.91 -0.16 -11.18 16 12 N -0.59 -10.42 2.89 -182.83 -0.53 -10.95 16 13 C 0.06 0.94 8.17 59.85 0.49 1.43 16 14 C 0.12 2.21 5.21 -4.04 -0.02 2.18 16 15 C 0.13 2.70 4.49 -66.86 -0.30 2.40 16 16 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.15 -2.64 7.86 -25.80 -0.20 -2.84 16 18 C 0.09 2.01 7.42 -2.97 -0.02 1.99 16 19 N -0.62 -14.52 3.18 -170.76 -0.54 -15.06 16 20 C -0.23 -6.16 9.38 -15.06 -0.14 -6.30 16 21 H 0.09 2.53 6.14 -52.49 -0.32 2.21 16 22 C 0.03 0.75 5.50 -17.43 -0.10 0.65 16 23 N -0.92 -26.92 13.97 55.49 0.78 -26.15 16 24 Si 0.90 22.14 24.91 -169.99 -4.23 17.91 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 27 H -0.27 -6.28 6.40 56.52 0.36 -5.92 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.14 1.36 6.30 -52.49 -0.33 1.03 16 32 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.15 1.63 5.52 -52.48 -0.29 1.34 16 34 H 0.05 0.60 6.79 -51.93 -0.35 0.25 16 35 H 0.12 2.31 5.02 -51.93 -0.26 2.05 16 36 H 0.07 1.05 6.07 -51.93 -0.32 0.73 16 37 H 0.09 1.58 8.02 -51.93 -0.42 1.17 16 38 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 39 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.01 3.58 -51.93 -0.19 0.83 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -32.54 356.37 -7.98 -40.52 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.37 Total: 1.68 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.47 Total: 4.66 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.30 Total: -52.16 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.47 Total: -15.81 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.23 Total: 17.91 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.54 -7.98 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085786821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.942 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds