Wall clock time and date at job start Tue Mar 31 2020 20:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35716 * 116.99932 * 2 1 4 4 C 1.39063 * 119.89893 * 180.02562 * 3 2 1 5 5 C 1.37640 * 120.12412 * 179.97438 * 4 3 2 6 6 C 1.39783 * 119.92666 * 359.97438 * 5 4 3 7 7 C 1.47521 * 120.10632 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00409 * 147.21159 * 7 6 5 9 9 N 1.34781 * 119.99710 * 327.21883 * 7 6 5 10 10 C 1.46503 * 119.99935 * 5.96355 * 9 7 6 11 11 C 1.46494 * 120.00070 * 185.96220 * 9 7 6 12 12 C 1.52996 * 109.47186 * 94.48230 * 11 9 7 13 13 H 1.09005 * 112.96802 * 67.13716 * 12 11 9 14 14 C 1.53947 * 113.77094 * 295.46326 * 12 11 9 15 15 C 1.53943 * 86.29340 * 222.09305 * 14 12 11 16 16 N 1.47580 * 113.77318 * 198.96721 * 12 11 9 17 17 C 1.36936 * 134.49148 * 318.94487 * 16 12 11 18 18 H 1.08002 * 120.00136 * 5.51390 * 17 16 12 19 19 C 1.38816 * 120.00149 * 185.52109 * 17 16 12 20 20 N 1.31618 * 119.99822 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99949 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47085 * 59.99637 * 21 19 17 23 23 H 1.48504 * 109.46847 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46774 * 299.99754 * 21 19 17 25 25 C 1.39856 * 119.80023 * 359.97438 * 6 5 4 26 26 Cl 1.73604 * 120.06694 * 180.02562 * 25 6 5 27 27 C 1.37897 * 119.87436 * 0.27426 * 25 6 5 28 28 H 1.08996 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47271 * 300.00719 * 1 2 3 30 30 H 1.09006 * 109.46987 * 60.00236 * 1 2 3 31 31 H 1.07995 * 119.93676 * 359.96998 * 4 3 2 32 32 H 1.08003 * 120.04163 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46996 * 95.84052 * 10 9 7 34 34 H 1.09000 * 109.47297 * 215.84124 * 10 9 7 35 35 H 1.08997 * 109.46936 * 335.83926 * 10 9 7 36 36 H 1.09007 * 109.47280 * 214.47991 * 11 9 7 37 37 H 1.08997 * 109.47285 * 334.48210 * 11 9 7 38 38 H 1.09004 * 113.73839 * 336.43457 * 14 12 11 39 39 H 1.08996 * 113.74547 * 107.63562 * 14 12 11 40 40 H 1.08998 * 113.77610 * 137.90261 * 15 14 12 41 41 H 1.09005 * 113.76606 * 269.19539 * 15 14 12 42 42 H 0.97001 * 120.00000 * 180.02562 * 20 19 17 43 43 H 1.08000 * 119.96420 * 179.72086 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4340 1.2796 -0.0005 5 6 4.0637 2.5035 -0.0011 6 6 3.3054 3.6778 -0.0016 7 6 3.9762 4.9917 -0.0016 8 8 3.4645 5.9357 -0.5722 9 7 5.1564 5.1458 0.6308 10 6 5.8368 3.9826 1.2056 11 6 5.7588 6.4764 0.7435 12 6 5.3627 7.1040 2.0814 13 1 5.7949 6.5871 2.9382 14 6 3.8533 7.3749 2.2170 15 6 4.2531 8.7190 2.8520 16 7 5.5276 8.5699 2.1229 17 6 6.4803 9.4418 1.6675 18 1 7.3028 9.0786 1.0691 19 6 6.3892 10.7923 1.9753 20 7 5.3868 11.2349 2.7043 21 14 7.6886 11.9817 1.3535 22 1 7.7161 11.9530 -0.1309 23 1 7.3642 13.3551 1.8157 24 1 9.0181 11.5824 1.8811 25 6 1.9089 3.6035 -0.0022 26 17 0.9604 5.0575 -0.0035 27 6 1.2866 2.3729 0.0036 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0196 0.3722 -0.0005 32 1 5.1424 2.5566 -0.0011 33 1 6.5760 3.6076 0.4976 34 1 6.3345 4.2732 2.1308 35 1 5.1062 3.2016 1.4159 36 1 6.8441 6.3896 0.6901 37 1 5.4041 7.1061 -0.0724 38 1 3.3382 7.4768 1.2617 39 1 3.3457 6.6971 2.9032 40 1 3.6496 9.5614 2.5141 41 1 4.3580 8.6787 3.9362 42 1 5.3229 12.1787 2.9191 43 1 0.2082 2.3138 0.0077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085876521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:20 Heat of formation + Delta-G solvation = 37.870073 kcal Electronic energy + Delta-G solvation = -27188.777533 eV Core-core repulsion = 23263.811898 eV Total energy + Delta-G solvation = -3924.965635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87181 -39.72523 -37.96352 -37.17912 -36.44229 -35.22175 -32.13196 -31.41237 -31.00892 -28.29400 -27.90639 -27.73228 -26.49570 -23.70211 -23.16691 -22.89816 -22.03385 -19.75142 -18.92690 -18.52904 -17.43574 -16.81978 -16.52617 -16.24780 -15.91594 -15.53611 -15.18425 -14.68961 -14.54497 -14.28077 -14.04412 -13.95993 -13.64220 -13.29000 -12.94860 -12.86452 -12.71486 -12.25822 -12.18359 -12.12587 -11.76356 -11.37380 -11.31655 -11.03904 -10.95310 -10.84620 -10.79357 -10.62601 -10.37801 -9.80619 -9.65302 -9.53228 -9.39144 -9.16299 -8.71284 -8.59269 -8.26402 -6.77056 -5.67998 -2.99567 0.62433 0.79692 1.99593 2.75727 2.78702 3.10190 3.44878 3.48601 3.49999 3.51005 4.31852 4.43719 4.48063 4.55288 4.69171 4.71619 4.83451 4.97049 5.04520 5.16500 5.20363 5.29150 5.34966 5.52052 5.57287 5.65298 5.68459 5.73034 5.84366 5.97027 6.03793 6.10626 6.19900 6.46941 6.62897 6.77446 6.82910 6.84972 6.89166 7.36557 7.53162 7.64549 7.69560 8.07769 8.39997 9.13260 9.79991 10.71539 11.49696 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.002807 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.834266 B = 9971.042058 C =10577.401620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.310 6.310 3 C 0.159 3.841 4 C -0.159 4.159 5 C -0.053 4.053 6 C -0.158 4.158 7 C 0.555 3.445 8 O -0.508 6.508 9 N -0.603 5.603 10 C 0.057 3.943 11 C 0.117 3.883 12 C 0.128 3.872 13 H 0.040 0.960 14 C -0.158 4.158 15 C 0.165 3.835 16 N -0.599 5.599 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.052 3.948 26 Cl -0.028 7.028 27 C -0.214 4.214 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 -26.106 -4.216 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.223 6.223 3 C 0.112 3.888 4 C -0.178 4.178 5 C -0.071 4.071 6 C -0.162 4.162 7 C 0.342 3.658 8 O -0.383 6.383 9 N -0.336 5.336 10 C -0.086 4.086 11 C -0.006 4.006 12 C 0.020 3.980 13 H 0.057 0.943 14 C -0.196 4.196 15 C 0.040 3.960 16 N -0.326 5.326 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.024 3.976 26 Cl 0.002 6.998 27 C -0.233 4.233 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.177 0.823 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.097 -25.288 -4.557 26.941 hybrid contribution 0.517 0.845 -0.008 0.990 sum -7.581 -24.443 -4.564 25.996 Atomic orbital electron populations 1.23172 0.77765 1.04396 1.01922 1.86063 1.21949 1.26320 1.87933 1.19087 0.92246 0.83827 0.93635 1.20457 0.91189 0.98871 1.07274 1.21739 1.01224 0.90060 0.94071 1.19800 0.92177 0.94862 1.09387 1.17916 0.80970 0.87313 0.79578 1.90863 1.63789 1.40842 1.42779 1.47631 1.21168 1.08968 1.55831 1.22465 0.97711 0.89325 0.99117 1.21833 0.96856 0.81307 1.00622 1.22502 0.94145 0.87394 0.93936 0.94251 1.23809 0.95512 0.98997 1.01296 1.22090 0.86408 0.93771 0.93713 1.45948 1.23144 0.98677 1.64794 1.18934 1.02562 0.87747 1.25721 0.90465 1.24793 0.98567 0.96924 1.00127 1.69831 1.31197 1.13899 1.41795 0.86247 0.80989 0.80434 0.78378 1.21095 1.21636 1.21266 1.20699 0.90841 0.88692 0.97338 1.98447 1.70857 1.34609 1.95934 1.21046 1.00925 0.90343 1.11024 0.87826 0.92156 0.92188 0.84004 0.82295 0.92280 0.90893 0.89585 0.91379 0.88611 0.89667 0.94042 0.91670 0.95743 0.93681 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.52 10.48 -18.85 -0.20 -2.72 16 3 C 0.16 1.46 6.69 -39.03 -0.26 1.20 16 4 C -0.16 -1.34 9.97 -39.49 -0.39 -1.73 16 5 C -0.05 -0.49 7.41 -39.22 -0.29 -0.78 16 6 C -0.16 -2.04 5.49 -104.93 -0.58 -2.62 16 7 C 0.56 8.94 6.66 -12.47 -0.08 8.85 16 8 O -0.51 -10.09 13.07 5.29 0.07 -10.02 16 9 N -0.60 -8.93 2.79 -182.82 -0.51 -9.44 16 10 C 0.06 0.56 8.86 59.85 0.53 1.09 16 11 C 0.12 2.14 5.47 -4.05 -0.02 2.12 16 12 C 0.13 2.71 4.59 -66.87 -0.31 2.40 16 13 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.16 -3.37 7.22 -25.81 -0.19 -3.56 16 15 C 0.17 4.20 7.39 -2.98 -0.02 4.17 16 16 N -0.60 -15.87 3.57 -170.75 -0.61 -16.48 16 17 C -0.22 -6.34 10.51 -15.06 -0.16 -6.50 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -28.30 11.53 55.49 0.64 -27.66 16 21 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 C 0.05 0.67 6.33 -39.10 -0.25 0.42 16 26 Cl -0.03 -0.41 26.57 -51.86 -1.38 -1.79 16 27 C -0.21 -2.14 8.80 -39.46 -0.35 -2.48 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.25 7.64 -51.93 -0.40 -0.14 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.16 1.13 4.86 -52.48 -0.25 0.88 16 33 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 34 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 35 H 0.09 0.72 4.49 -51.93 -0.23 0.49 16 36 H 0.07 1.16 8.11 -51.92 -0.42 0.74 16 37 H 0.10 2.07 7.22 -51.93 -0.38 1.69 16 38 H 0.08 1.95 6.74 -51.93 -0.35 1.60 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.82 7.42 -51.93 -0.39 1.43 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.14 1.13 6.27 -52.49 -0.33 0.80 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -35.17 362.45 -8.64 -43.81 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.62 Total: -2.23 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.47 Total: 3.37 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.48 Total: -53.58 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.13 Total: -12.73 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.38 Total: -1.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.17 -8.64 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085876521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.675 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds