Wall clock time and date at job start Tue Mar 31 2020 20:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99950 * 2 1 4 4 C 1.38835 * 119.97936 * 359.72354 * 3 2 1 5 5 C 1.38355 * 120.22550 * 179.76588 * 4 3 2 6 6 Cl 1.73598 * 119.90902 * 180.25818 * 5 4 3 7 7 C 1.38127 * 120.17909 * 0.50703 * 5 4 3 8 8 C 1.39547 * 119.95578 * 359.75371 * 7 5 4 9 9 C 1.47860 * 120.11367 * 179.97438 * 8 7 5 10 10 O 1.21555 * 120.00228 * 147.93213 * 9 8 7 11 11 N 1.34774 * 120.00096 * 327.92150 * 9 8 7 12 12 C 1.46510 * 119.99620 * 6.03840 * 11 9 8 13 13 C 1.46492 * 120.00258 * 186.02785 * 11 9 8 14 14 C 1.53007 * 109.47071 * 97.42300 * 13 11 9 15 15 H 1.09005 * 112.95723 * 49.41715 * 14 13 11 16 16 C 1.53946 * 113.77001 * 181.09343 * 14 13 11 17 17 C 1.53948 * 86.28532 * 137.91100 * 16 14 13 18 18 N 1.47572 * 113.76937 * 277.59158 * 14 13 11 19 19 C 1.36937 * 134.49347 * 41.05561 * 18 14 13 20 20 H 1.08002 * 120.00331 * 9.79683 * 19 18 14 21 21 C 1.38819 * 120.00269 * 189.79751 * 19 18 14 22 22 N 1.31623 * 119.99518 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00226 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46980 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46919 * 120.00258 * 23 21 19 26 26 H 1.48501 * 109.47092 * 240.00367 * 23 21 19 27 27 C 1.38465 * 119.97612 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47222 * 300.00367 * 1 2 3 30 30 H 1.09003 * 109.47117 * 59.99954 * 1 2 3 31 31 H 1.07995 * 119.88162 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.02142 * 179.76255 * 7 5 4 33 33 H 1.08994 * 109.47279 * 95.60125 * 12 11 9 34 34 H 1.09003 * 109.46842 * 215.60578 * 12 11 9 35 35 H 1.09002 * 109.46701 * 335.59936 * 12 11 9 36 36 H 1.09001 * 109.47214 * 217.41977 * 13 11 9 37 37 H 1.08997 * 109.47218 * 337.42422 * 13 11 9 38 38 H 1.09000 * 113.73916 * 252.25689 * 16 14 13 39 39 H 1.08994 * 113.74156 * 23.45604 * 16 14 13 40 40 H 1.08998 * 113.77123 * 90.70129 * 17 16 14 41 41 H 1.09004 * 113.76460 * 221.97721 * 17 16 14 42 42 H 0.97001 * 119.99716 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.09213 * 359.95649 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3750 -0.0058 5 6 1.9122 3.6104 -0.0009 6 17 0.9581 5.0608 -0.0015 7 6 3.2910 3.6930 -0.0009 8 6 4.0588 2.5278 -0.0005 9 6 5.5350 2.6121 -0.0010 10 8 6.1929 1.7565 0.5582 11 7 6.1513 3.6376 -0.6215 12 6 5.3606 4.7370 -1.1807 13 6 7.6116 3.6531 -0.7367 14 6 8.0203 3.1223 -2.1123 15 1 7.4754 3.5950 -2.9296 16 6 9.5434 3.0706 -2.3300 17 6 9.3020 1.7003 -2.9888 18 7 8.0596 1.6493 -2.1939 19 6 7.2632 0.6404 -1.7217 20 1 6.3022 0.8701 -1.2857 21 6 7.6911 -0.6777 -1.8033 22 7 8.8625 -0.9576 -2.3342 23 14 6.6050 -2.0539 -1.1585 24 1 5.3492 -1.4790 -0.6130 25 1 6.2819 -2.9893 -2.2656 26 1 7.3209 -2.7872 -0.0838 27 6 3.4288 1.2828 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2111 2.3158 -0.0107 32 1 3.7745 4.6588 -0.0009 33 1 5.3138 5.5538 -0.4606 34 1 5.8279 5.0895 -2.1002 35 1 4.3519 4.3853 -1.3975 36 1 7.9745 4.6741 -0.6188 37 1 8.0440 3.0217 0.0395 38 1 9.9142 3.8296 -3.0190 39 1 10.1174 3.0197 -1.4049 40 1 9.1336 1.7535 -4.0644 41 1 10.0354 0.9436 -2.7101 42 1 9.1614 -1.8786 -2.3916 43 1 4.0181 0.3778 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085888396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:24 Heat of formation + Delta-G solvation = 40.716031 kcal Electronic energy + Delta-G solvation = -27941.491745 eV Core-core repulsion = 24016.649521 eV Total energy + Delta-G solvation = -3924.842225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66777 -39.46788 -37.88855 -37.34414 -36.31368 -35.15240 -32.00217 -31.23968 -30.76262 -28.21731 -27.72297 -27.55532 -26.40999 -23.76758 -23.18219 -22.60899 -21.88443 -19.70536 -18.96142 -18.02682 -16.96804 -16.67526 -16.59473 -15.98610 -15.93088 -15.61250 -15.05913 -14.68830 -14.59479 -13.95015 -13.91596 -13.62761 -13.47521 -13.28580 -12.94744 -12.70888 -12.56075 -12.38083 -12.06330 -11.49413 -11.45096 -11.42114 -11.30805 -11.17597 -10.95101 -10.80280 -10.78032 -10.57728 -10.36384 -9.88875 -9.56566 -9.42102 -9.25787 -8.96192 -8.54326 -8.38837 -8.12457 -6.64313 -5.54020 -2.85857 0.74401 1.07607 1.83112 2.88623 3.06497 3.38657 3.53860 3.60437 3.62587 3.77897 4.45731 4.63011 4.68145 4.75906 4.90462 4.92719 5.04342 5.13427 5.24684 5.25434 5.29525 5.41145 5.47407 5.61663 5.71769 5.76293 5.84688 5.88760 5.99395 6.01546 6.04890 6.18379 6.34224 6.40434 6.47359 6.74742 6.79590 6.97368 7.14981 7.39108 7.57676 7.75470 7.83028 8.23174 8.63888 9.28320 9.94878 10.79729 11.62060 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004685 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.341039 B = 5975.156094 C = 8054.663121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.136 3.864 4 C -0.189 4.189 5 C -0.006 4.006 6 Cl -0.068 7.068 7 C -0.137 4.137 8 C -0.066 4.066 9 C 0.549 3.451 10 O -0.483 6.483 11 N -0.604 5.604 12 C 0.058 3.942 13 C 0.116 3.884 14 C 0.123 3.877 15 H 0.042 0.958 16 C -0.156 4.156 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.193 4.193 20 H 0.086 0.914 21 C -0.012 4.012 22 N -0.926 5.926 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.292 1.292 27 C -0.089 4.089 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.019 0.981 41 H 0.082 0.918 42 H 0.248 0.752 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.406 13.244 3.530 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.090 3.910 4 C -0.208 4.208 5 C -0.033 4.033 6 Cl -0.039 7.039 7 C -0.156 4.156 8 C -0.070 4.070 9 C 0.336 3.664 10 O -0.356 6.356 11 N -0.338 5.338 12 C -0.085 4.085 13 C -0.007 4.007 14 C 0.015 3.985 15 H 0.059 0.941 16 C -0.195 4.195 17 C 0.022 3.978 18 N -0.322 5.322 19 C -0.321 4.321 20 H 0.104 0.896 21 C -0.207 4.207 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.219 1.219 27 C -0.109 4.109 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.131 12.365 3.923 19.931 hybrid contribution -1.106 -0.505 0.030 1.217 sum -16.237 11.860 3.953 20.492 Atomic orbital electron populations 1.23127 0.78207 1.04324 1.01388 1.86187 1.21477 1.25889 1.88431 1.18661 0.91756 0.84061 0.96497 1.21149 1.00670 0.90597 1.08418 1.20415 0.91445 0.87202 1.04220 1.98367 1.72036 1.36539 1.96942 1.21730 0.91509 0.99841 1.02495 1.19790 0.94242 0.92427 1.00515 1.17887 0.86132 0.81989 0.80405 1.90921 1.65376 1.37429 1.41909 1.47505 1.07605 1.21619 1.57054 1.22444 0.97633 0.89590 0.98852 1.21957 0.77932 1.00481 1.00318 1.22666 0.93986 0.87752 0.94110 0.94062 1.23766 0.95575 0.99436 1.00741 1.22341 0.90043 0.92734 0.92670 1.45993 1.28314 0.98554 1.59300 1.19275 0.98166 0.84724 1.29899 0.89625 1.24726 0.97068 0.97109 1.01828 1.69823 1.19626 1.17465 1.50621 0.86152 0.79953 0.82467 0.77947 1.20188 1.22426 1.21926 1.20750 0.91418 0.98958 0.99735 0.87913 0.92500 0.92431 0.84239 0.82603 0.92587 0.91233 0.89454 0.91498 0.88536 0.93302 0.90670 0.96319 0.89970 0.94224 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.24 10.49 -19.44 -0.20 -4.44 16 3 C 0.14 1.96 6.68 -39.28 -0.26 1.70 16 4 C -0.19 -2.23 8.81 -39.32 -0.35 -2.57 16 5 C -0.01 -0.07 6.31 -39.58 -0.25 -0.32 16 6 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 7 C -0.14 -1.76 7.21 -39.13 -0.28 -2.04 16 8 C -0.07 -1.09 5.51 -104.99 -0.58 -1.67 16 9 C 0.55 10.66 5.86 -12.32 -0.07 10.59 16 10 O -0.48 -11.56 13.68 5.32 0.07 -11.49 16 11 N -0.60 -10.10 2.88 -182.68 -0.53 -10.63 16 12 C 0.06 0.68 8.85 59.85 0.53 1.21 16 13 C 0.12 2.05 5.42 -4.04 -0.02 2.03 16 14 C 0.12 2.47 4.53 -66.86 -0.30 2.16 16 15 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 16 C -0.16 -2.95 7.86 -25.80 -0.20 -3.16 16 17 C 0.15 3.55 7.78 -2.98 -0.02 3.53 16 18 N -0.60 -15.43 3.56 -170.75 -0.61 -16.04 16 19 C -0.19 -5.56 9.31 -15.06 -0.14 -5.71 16 20 H 0.09 2.44 4.52 -52.49 -0.24 2.21 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.76 11.26 55.49 0.62 -28.14 16 23 Si 0.90 24.12 29.55 -169.99 -5.02 19.10 16 24 H -0.28 -7.15 6.98 56.52 0.39 -6.76 16 25 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 26 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 27 C -0.09 -1.55 9.54 -39.02 -0.37 -1.92 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 30 H 0.06 0.41 7.64 -51.93 -0.40 0.02 16 31 H 0.14 1.27 6.28 -52.49 -0.33 0.94 16 32 H 0.16 1.68 4.78 -52.49 -0.25 1.43 16 33 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 34 H 0.07 0.75 8.02 -51.93 -0.42 0.34 16 35 H 0.09 1.01 4.47 -51.93 -0.23 0.78 16 36 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 37 H 0.10 2.03 7.15 -51.93 -0.37 1.66 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.08 2.22 6.77 -51.93 -0.35 1.87 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 43 H 0.15 3.07 7.83 -52.49 -0.41 2.66 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -35.20 360.23 -8.62 -43.83 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.46 Total: -0.03 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.43 Total: 4.57 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.51 Total: -54.80 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.13 Total: -15.93 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.02 Total: 19.10 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.20 -8.62 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085888396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.542 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds