Wall clock time and date at job start Tue Mar 31 2020 20:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99950 * 2 1 4 4 C 1.38835 * 119.97936 * 359.72354 * 3 2 1 5 5 C 1.38355 * 120.22550 * 179.76588 * 4 3 2 6 6 Cl 1.73598 * 119.90902 * 180.25818 * 5 4 3 7 7 C 1.38127 * 120.17909 * 0.50703 * 5 4 3 8 8 C 1.39547 * 119.95578 * 359.75371 * 7 5 4 9 9 C 1.47860 * 120.11367 * 179.97438 * 8 7 5 10 10 O 1.21555 * 120.00228 * 147.93213 * 9 8 7 11 11 N 1.34774 * 120.00096 * 327.92150 * 9 8 7 12 12 C 1.46510 * 119.99620 * 6.03840 * 11 9 8 13 13 C 1.46492 * 120.00258 * 186.02785 * 11 9 8 14 14 C 1.53007 * 109.47071 * 97.42300 * 13 11 9 15 15 H 1.09005 * 112.95723 * 49.41715 * 14 13 11 16 16 C 1.53946 * 113.77001 * 181.09343 * 14 13 11 17 17 C 1.53948 * 86.28532 * 137.91100 * 16 14 13 18 18 N 1.47572 * 113.76937 * 277.59158 * 14 13 11 19 19 C 1.36937 * 134.49347 * 41.05561 * 18 14 13 20 20 H 1.08002 * 120.00331 * 9.79683 * 19 18 14 21 21 C 1.38819 * 120.00269 * 189.79751 * 19 18 14 22 22 N 1.31623 * 119.99518 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00226 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46980 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46919 * 120.00258 * 23 21 19 26 26 H 1.48501 * 109.47092 * 240.00367 * 23 21 19 27 27 C 1.38465 * 119.97612 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47222 * 300.00367 * 1 2 3 30 30 H 1.09003 * 109.47117 * 59.99954 * 1 2 3 31 31 H 1.07995 * 119.88162 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.02142 * 179.76255 * 7 5 4 33 33 H 1.08994 * 109.47279 * 95.60125 * 12 11 9 34 34 H 1.09003 * 109.46842 * 215.60578 * 12 11 9 35 35 H 1.09002 * 109.46701 * 335.59936 * 12 11 9 36 36 H 1.09001 * 109.47214 * 217.41977 * 13 11 9 37 37 H 1.08997 * 109.47218 * 337.42422 * 13 11 9 38 38 H 1.09000 * 113.73916 * 252.25689 * 16 14 13 39 39 H 1.08994 * 113.74156 * 23.45604 * 16 14 13 40 40 H 1.08998 * 113.77123 * 90.70129 * 17 16 14 41 41 H 1.09004 * 113.76460 * 221.97721 * 17 16 14 42 42 H 0.97001 * 119.99716 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.09213 * 359.95649 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3750 -0.0058 5 6 1.9122 3.6104 -0.0009 6 17 0.9581 5.0608 -0.0015 7 6 3.2910 3.6930 -0.0009 8 6 4.0588 2.5278 -0.0005 9 6 5.5350 2.6121 -0.0010 10 8 6.1929 1.7565 0.5582 11 7 6.1513 3.6376 -0.6215 12 6 5.3606 4.7370 -1.1807 13 6 7.6116 3.6531 -0.7367 14 6 8.0203 3.1223 -2.1123 15 1 7.4754 3.5950 -2.9296 16 6 9.5434 3.0706 -2.3300 17 6 9.3020 1.7003 -2.9888 18 7 8.0596 1.6493 -2.1939 19 6 7.2632 0.6404 -1.7217 20 1 6.3022 0.8701 -1.2857 21 6 7.6911 -0.6777 -1.8033 22 7 8.8625 -0.9576 -2.3342 23 14 6.6050 -2.0539 -1.1585 24 1 5.3492 -1.4790 -0.6130 25 1 6.2819 -2.9893 -2.2656 26 1 7.3209 -2.7872 -0.0838 27 6 3.4288 1.2828 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2111 2.3158 -0.0107 32 1 3.7745 4.6588 -0.0009 33 1 5.3138 5.5538 -0.4606 34 1 5.8279 5.0895 -2.1002 35 1 4.3519 4.3853 -1.3975 36 1 7.9745 4.6741 -0.6188 37 1 8.0440 3.0217 0.0395 38 1 9.9142 3.8296 -3.0190 39 1 10.1174 3.0197 -1.4049 40 1 9.1336 1.7535 -4.0644 41 1 10.0354 0.9436 -2.7101 42 1 9.1614 -1.8786 -2.3916 43 1 4.0181 0.3778 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085888396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:23 Heat of formation + Delta-G solvation = 16.898618 kcal Electronic energy + Delta-G solvation = -27942.524546 eV Core-core repulsion = 24016.649521 eV Total energy + Delta-G solvation = -3925.875025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.83898 -40.71809 -39.43426 -38.52329 -37.30664 -36.55313 -34.14232 -32.40149 -31.84739 -29.84739 -29.42400 -28.46210 -27.53607 -25.21997 -25.12600 -23.66917 -23.29543 -20.96605 -20.74915 -19.18618 -18.74155 -18.03101 -17.66242 -17.20854 -17.02299 -16.80211 -16.65928 -16.25468 -15.80418 -15.73184 -15.38409 -14.87608 -14.82803 -14.42952 -14.34609 -14.04095 -13.73679 -13.46110 -13.30577 -13.03638 -12.97262 -12.88867 -12.62145 -12.44017 -12.37945 -12.31404 -12.24989 -12.05630 -11.79390 -11.73400 -11.41299 -11.27626 -10.88484 -10.68602 -10.08593 -9.55165 -9.40352 -8.71614 -7.79953 -5.09555 -0.38483 0.01923 0.89124 1.32793 1.36678 1.46477 1.65061 1.95905 2.30051 2.49989 2.54317 3.30331 3.42559 3.49016 3.71844 3.79922 3.95934 4.00835 4.04406 4.24558 4.30666 4.33335 4.35104 4.36332 4.43067 4.54007 4.68147 4.68860 4.78544 4.83961 4.87515 4.93158 4.96379 5.03891 5.10550 5.17057 5.26090 5.44306 5.61173 5.73520 5.84022 6.10217 6.20792 6.43241 7.06700 7.24179 7.75227 8.67337 9.36208 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004685 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.341039 B = 5975.156094 C = 8054.663121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.336 6.336 3 C 0.135 3.865 4 C -0.170 4.170 5 C -0.001 4.001 6 Cl -0.037 7.037 7 C -0.123 4.123 8 C -0.082 4.082 9 C 0.541 3.459 10 O -0.549 6.549 11 N -0.602 5.602 12 C 0.048 3.952 13 C 0.121 3.879 14 C 0.125 3.875 15 H 0.063 0.937 16 C -0.125 4.125 17 C 0.134 3.866 18 N -0.629 5.629 19 C -0.174 4.174 20 H 0.084 0.916 21 C -0.077 4.077 22 N -0.958 5.958 23 Si 0.946 3.054 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.300 1.300 27 C -0.125 4.125 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.018 0.982 41 H 0.043 0.957 42 H 0.239 0.761 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 17.655 3.256 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.250 6.250 3 C 0.089 3.911 4 C -0.190 4.190 5 C -0.028 4.028 6 Cl -0.008 7.008 7 C -0.141 4.141 8 C -0.086 4.086 9 C 0.330 3.670 10 O -0.427 6.427 11 N -0.334 5.334 12 C -0.093 4.093 13 C -0.002 4.002 14 C 0.018 3.982 15 H 0.080 0.920 16 C -0.164 4.164 17 C 0.009 3.991 18 N -0.355 5.355 19 C -0.304 4.304 20 H 0.101 0.899 21 C -0.268 4.268 22 N -0.611 5.611 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.228 1.228 27 C -0.145 4.145 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.191 0.809 32 H 0.200 0.800 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.021 16.866 3.627 24.948 hybrid contribution -0.392 -1.689 0.111 1.737 sum -18.414 15.177 3.738 24.153 Atomic orbital electron populations 1.23517 0.75397 1.06135 1.03097 1.86159 1.24462 1.26041 1.88363 1.18597 0.90785 0.85370 0.96387 1.21440 1.02075 0.89460 1.05983 1.20508 0.91377 0.88334 1.02537 1.98388 1.71068 1.34632 1.96682 1.21867 0.91888 0.99312 1.01056 1.19561 0.92861 0.93456 1.02695 1.18462 0.87371 0.81617 0.79588 1.90877 1.66947 1.39880 1.44946 1.47661 1.07644 1.22057 1.56041 1.22810 0.97169 0.88728 1.00557 1.21816 0.78750 1.02348 0.97306 1.22934 0.95130 0.84188 0.95909 0.91989 1.23494 0.94980 0.96940 1.00957 1.22354 0.88870 0.95111 0.92749 1.46404 1.28449 1.01034 1.59572 1.19515 0.97999 0.85627 1.27223 0.89891 1.25311 0.98440 0.99103 1.03964 1.69979 1.20987 1.16864 1.53241 0.85434 0.78855 0.80668 0.77255 1.20018 1.22073 1.22766 1.20537 0.92910 0.97846 1.03252 0.86344 0.90561 0.90728 0.80885 0.80023 0.88763 0.89401 0.89192 0.86210 0.92617 0.88606 0.90610 0.96441 0.93819 0.95171 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -9.27 10.49 -92.47 -0.97 -10.24 16 3 C 0.13 3.86 6.68 22.47 0.15 4.01 16 4 C -0.17 -3.53 8.81 22.44 0.20 -3.33 16 5 C 0.00 -0.01 6.31 22.27 0.14 0.13 16 6 Cl -0.04 -0.55 28.95 -2.72 -0.08 -0.63 16 7 C -0.12 -2.83 7.21 22.56 0.16 -2.66 16 8 C -0.08 -2.73 5.51 -20.10 -0.11 -2.84 16 9 C 0.54 21.46 5.86 86.79 0.51 21.97 16 10 O -0.55 -27.97 13.68 -3.89 -0.05 -28.02 16 11 N -0.60 -19.09 2.88 -850.16 -2.45 -21.53 16 12 C 0.05 0.92 8.85 127.77 1.13 2.05 16 13 C 0.12 4.05 5.42 86.38 0.47 4.51 16 14 C 0.12 4.76 4.53 45.10 0.20 4.96 16 15 H 0.06 2.18 8.04 -2.38 -0.02 2.16 16 16 C -0.13 -4.45 7.86 31.25 0.25 -4.21 16 17 C 0.13 6.58 7.78 86.48 0.67 7.25 16 18 N -0.63 -33.18 3.56 -694.12 -2.47 -35.66 16 19 C -0.17 -10.51 9.31 84.04 0.78 -9.73 16 20 H 0.08 5.01 4.52 -2.91 -0.01 5.00 16 21 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 22 N -0.96 -62.88 11.26 21.65 0.24 -62.64 16 23 Si 0.95 52.84 29.55 68.60 2.03 54.86 16 24 H -0.28 -15.07 6.98 99.48 0.69 -14.38 16 25 H -0.29 -15.95 7.11 99.48 0.71 -15.24 16 26 H -0.30 -16.89 7.11 99.48 0.71 -16.18 16 27 C -0.13 -4.61 9.54 22.64 0.22 -4.39 16 28 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 0.82 7.67 -2.38 -0.02 0.80 16 30 H 0.07 0.84 7.64 -2.39 -0.02 0.82 16 31 H 0.17 2.36 6.28 -2.91 -0.02 2.34 16 32 H 0.18 3.12 4.78 -2.91 -0.01 3.11 16 33 H 0.09 1.17 7.58 -2.39 -0.02 1.15 16 34 H 0.09 1.43 8.02 -2.39 -0.02 1.41 16 35 H 0.09 1.72 4.47 -2.39 -0.01 1.71 16 36 H 0.12 2.76 8.12 -2.39 -0.02 2.74 16 37 H 0.06 2.37 7.15 -2.39 -0.02 2.35 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.04 2.47 6.77 -2.38 -0.02 2.45 16 42 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.10 4.75 7.83 -2.91 -0.02 4.73 16 Total: -1.00 -85.90 360.23 3.63 -82.26 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.04 Total: 7.00 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.35 Total: 14.59 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -4.68 Total: -119.83 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -1.02 Total: -38.27 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 2.03 Total: 54.86 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -85.90 3.63 -82.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085888396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.164 kcal (2) G-P(sol) polarization free energy of solvation -85.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds