Wall clock time and date at job start Tue Mar 31 2020 20:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35673 * 117.00036 * 2 1 4 4 C 1.38692 * 120.13759 * 359.96818 * 3 2 1 5 5 C 1.38058 * 120.10053 * 180.02562 * 4 3 2 6 6 C 1.38643 * 120.37660 * 359.97438 * 5 4 3 7 7 Cl 1.73598 * 119.86400 * 179.97438 * 6 5 4 8 8 C 1.37894 * 120.27128 * 359.74726 * 6 5 4 9 9 C 1.39713 * 119.89582 * 0.50455 * 8 6 5 10 10 C 1.47530 * 120.18571 * 179.76656 * 9 8 6 11 11 O 1.21596 * 119.99977 * 146.33141 * 10 9 8 12 12 N 1.34779 * 120.00429 * 326.33702 * 10 9 8 13 13 C 1.46503 * 119.99669 * 7.12728 * 12 10 9 14 14 C 1.46497 * 119.99997 * 187.13018 * 12 10 9 15 15 C 1.53000 * 109.47121 * 98.00575 * 14 12 10 16 16 H 1.08995 * 112.96617 * 48.29085 * 15 14 12 17 17 C 1.53950 * 113.76625 * 179.97438 * 15 14 12 18 18 C 1.53950 * 86.28854 * 137.90740 * 17 15 14 19 19 N 1.47580 * 86.11759 * 336.38979 * 18 17 15 20 20 C 1.36935 * 134.49610 * 204.64221 * 19 18 17 21 21 H 1.08001 * 120.00286 * 188.94703 * 20 19 18 22 22 C 1.38816 * 119.99960 * 8.93843 * 20 19 18 23 23 N 1.31618 * 119.99600 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00004 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47426 * 59.99954 * 24 22 20 26 26 H 1.48500 * 109.47157 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47237 * 300.00198 * 24 22 20 28 28 H 1.09005 * 109.46703 * 60.00756 * 1 2 3 29 29 H 1.08992 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47350 * 300.01009 * 1 2 3 31 31 H 1.07998 * 119.95391 * 0.05275 * 4 3 2 32 32 H 1.08000 * 119.81574 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.05266 * 180.25693 * 8 6 5 34 34 H 1.09002 * 109.46686 * 96.24585 * 13 12 10 35 35 H 1.08995 * 109.46697 * 216.24149 * 13 12 10 36 36 H 1.08997 * 109.47168 * 336.24319 * 13 12 10 37 37 H 1.09003 * 109.47199 * 218.00617 * 14 12 10 38 38 H 1.08999 * 109.47436 * 338.00071 * 14 12 10 39 39 H 1.08994 * 113.74053 * 252.24999 * 17 15 14 40 40 H 1.09004 * 113.74475 * 23.45437 * 17 15 14 41 41 H 1.08998 * 113.77380 * 90.69343 * 18 17 15 42 42 H 1.09003 * 113.76852 * 221.98417 * 18 17 15 43 43 H 0.96997 * 119.99264 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2924 2.3738 -0.0007 5 6 1.9200 3.6035 -0.0012 6 6 3.3040 3.6843 -0.0005 7 17 4.0793 5.2375 -0.0019 8 6 4.0673 2.5359 0.0059 9 6 3.4441 1.2855 0.0011 10 6 4.2546 0.0527 0.0028 11 8 3.8536 -0.9377 0.5832 12 7 5.4394 0.0242 -0.6389 13 6 5.9961 1.2559 -1.2040 14 6 6.1705 -1.2383 -0.7714 15 6 5.8974 -1.8436 -2.1498 16 1 6.0145 -1.1248 -2.9607 17 6 6.6219 -3.1796 -2.3953 18 6 5.3076 -3.6594 -3.0378 19 7 4.6468 -2.6242 -2.2195 20 6 3.3815 -2.4555 -1.7238 21 1 3.1034 -1.5208 -1.2597 22 6 2.4560 -3.4859 -1.8182 23 7 2.7950 -4.6251 -2.3836 24 14 0.7298 -3.2556 -1.1428 25 1 0.0736 -2.1192 -1.8381 26 1 -0.0582 -4.4944 -1.3654 27 1 0.8017 -2.9701 0.3128 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2138 2.3190 -0.0003 32 1 1.3294 4.5078 -0.0013 33 1 5.1453 2.6029 0.0106 34 1 6.7050 1.6909 -0.4994 35 1 6.5072 1.0279 -2.1394 36 1 5.1906 1.9652 -1.3937 37 1 7.2390 -1.0528 -0.6613 38 1 5.8408 -1.9321 0.0019 39 1 7.4522 -3.1060 -3.0975 40 1 6.8847 -3.7110 -1.4806 41 1 5.2499 -3.4747 -4.1104 42 1 5.0323 -4.6785 -2.7662 43 1 2.1484 -5.3451 -2.4492 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085958420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:05 Heat of formation + Delta-G solvation = 21.058512 kcal Electronic energy + Delta-G solvation = -28680.511226 eV Core-core repulsion = 24754.816587 eV Total energy + Delta-G solvation = -3925.694639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.86568 -40.41800 -39.26357 -38.70239 -37.15213 -36.39221 -34.09582 -32.85312 -31.11453 -29.88241 -29.54219 -28.31656 -27.65259 -25.18254 -25.11643 -23.62146 -23.10335 -20.93103 -20.74726 -18.95772 -18.73003 -18.30559 -17.82576 -17.21478 -16.73472 -16.68750 -16.41247 -16.28553 -15.81491 -15.63917 -15.29582 -14.91225 -14.79434 -14.31990 -14.26514 -13.91158 -13.72723 -13.43092 -13.28529 -13.01882 -12.92801 -12.80873 -12.64310 -12.44864 -12.37459 -12.25530 -12.14031 -11.91332 -11.71901 -11.65524 -11.40641 -11.20998 -10.76045 -10.61776 -10.09929 -9.52255 -9.19153 -8.69409 -7.73566 -5.04218 -0.21755 0.09733 1.10061 1.29881 1.41373 1.49748 1.81816 2.12381 2.23775 2.57832 2.63560 3.36896 3.48447 3.53952 3.64857 3.84118 4.00511 4.01570 4.11457 4.20803 4.21558 4.31388 4.34203 4.42265 4.48246 4.52461 4.63402 4.66402 4.73523 4.78520 4.90331 4.96115 5.02374 5.05133 5.09995 5.18348 5.39700 5.47085 5.68657 5.78107 5.85798 6.13326 6.27123 6.54094 7.13243 7.39075 7.81559 8.71467 9.42211 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012181 B = 0.005209 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.199113 B = 5373.889444 C = 7281.386303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.316 6.316 3 C 0.161 3.839 4 C -0.203 4.203 5 C -0.036 4.036 6 C -0.087 4.087 7 Cl -0.053 7.053 8 C -0.047 4.047 9 C -0.180 4.180 10 C 0.547 3.453 11 O -0.543 6.543 12 N -0.611 5.611 13 C 0.052 3.948 14 C 0.123 3.877 15 C 0.125 3.875 16 H 0.059 0.941 17 C -0.126 4.126 18 C 0.136 3.864 19 N -0.629 5.629 20 C -0.176 4.176 21 H 0.097 0.903 22 C -0.087 4.087 23 N -0.966 5.966 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.309 1.309 27 H -0.286 1.286 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.016 0.984 42 H 0.042 0.958 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 22.542 3.508 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.228 6.228 3 C 0.113 3.887 4 C -0.222 4.222 5 C -0.055 4.055 6 C -0.114 4.114 7 Cl -0.024 7.024 8 C -0.065 4.065 9 C -0.184 4.184 10 C 0.336 3.664 11 O -0.420 6.420 12 N -0.344 5.344 13 C -0.089 4.089 14 C -0.001 4.001 15 C 0.019 3.981 16 H 0.077 0.923 17 C -0.164 4.164 18 C 0.010 3.990 19 N -0.355 5.355 20 C -0.305 4.305 21 H 0.115 0.885 22 C -0.277 4.277 23 N -0.619 5.619 24 Si 0.784 3.216 25 H -0.191 1.191 26 H -0.236 1.236 27 H -0.213 1.213 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.185 0.815 32 H 0.190 0.810 33 H 0.194 0.806 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.133 0.867 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.817 21.887 3.895 22.556 hybrid contribution -1.520 -0.667 0.063 1.661 sum 2.297 21.220 3.958 21.708 Atomic orbital electron populations 1.23469 0.77367 1.04047 1.03701 1.86364 1.22754 1.27037 1.86660 1.19542 0.91489 0.85676 0.92008 1.21443 1.01772 0.90262 1.08691 1.21322 0.92448 0.98530 0.93186 1.20674 0.93268 0.86925 1.10505 1.98369 1.80941 1.25851 1.97208 1.21691 1.02184 0.88167 0.94490 1.19332 0.91291 0.94157 1.13628 1.18317 0.81330 0.87315 0.79408 1.90877 1.70366 1.36603 1.44197 1.47687 1.20381 1.10355 1.55955 1.22705 1.00075 0.85803 1.00278 1.21736 0.96585 0.84609 0.97126 1.22904 0.85390 0.94029 0.95826 0.92316 1.23503 0.96320 0.95718 1.00906 1.22323 0.89423 0.94708 0.92513 1.46459 1.06899 1.23971 1.58132 1.19748 0.86428 0.98681 1.25636 0.88510 1.25422 1.01918 0.96389 1.03972 1.70013 1.34239 1.04936 1.52737 0.85586 0.81737 0.75600 0.78686 1.19078 1.23639 1.21284 0.90215 0.90566 0.88990 0.81487 0.81024 0.80615 0.89146 0.89804 0.89401 0.86716 0.92835 0.88700 0.90681 0.96589 0.93930 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.14 113.37 1.04 1.29 16 2 O -0.32 -12.77 8.08 -72.39 -0.59 -13.35 16 3 C 0.16 5.32 6.66 22.84 0.15 5.47 16 4 C -0.20 -4.55 9.03 22.34 0.20 -4.35 16 5 C -0.04 -0.65 9.81 22.32 0.22 -0.43 16 6 C -0.09 -1.68 6.31 22.28 0.14 -1.54 16 7 Cl -0.05 -0.82 28.94 -2.72 -0.08 -0.90 16 8 C -0.05 -1.08 7.19 22.54 0.16 -0.92 16 9 C -0.18 -5.93 5.50 -20.01 -0.11 -6.04 16 10 C 0.55 22.20 5.78 86.69 0.50 22.70 16 11 O -0.54 -28.16 12.95 13.49 0.17 -27.99 16 12 N -0.61 -20.35 2.88 -850.55 -2.45 -22.80 16 13 C 0.05 1.10 8.87 127.77 1.13 2.23 16 14 C 0.12 4.34 5.44 86.38 0.47 4.81 16 15 C 0.13 4.96 4.52 45.09 0.20 5.17 16 16 H 0.06 2.18 7.98 -2.39 -0.02 2.16 16 17 C -0.13 -4.65 7.86 31.26 0.25 -4.41 16 18 C 0.14 6.80 7.75 86.48 0.67 7.48 16 19 N -0.63 -33.93 3.56 -694.06 -2.47 -36.40 16 20 C -0.18 -10.71 9.51 84.03 0.80 -9.91 16 21 H 0.10 5.84 4.00 -2.91 -0.01 5.83 16 22 C -0.09 -5.56 5.50 84.86 0.47 -5.09 16 23 N -0.97 -64.15 11.26 21.65 0.24 -63.90 16 24 Si 0.95 51.81 26.42 68.60 1.81 53.62 16 25 H -0.26 -13.05 6.72 99.48 0.67 -12.38 16 26 H -0.31 -16.91 7.11 99.48 0.71 -16.20 16 27 H -0.29 -15.70 7.06 99.48 0.70 -15.00 16 28 H 0.08 1.97 7.66 -2.38 -0.02 1.95 16 29 H 0.08 2.62 5.43 -2.39 -0.01 2.60 16 30 H 0.09 2.03 7.66 -2.39 -0.02 2.01 16 31 H 0.17 2.76 6.30 -2.91 -0.02 2.75 16 32 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.18 3.21 4.92 -2.91 -0.01 3.20 16 34 H 0.09 1.29 7.65 -2.39 -0.02 1.27 16 35 H 0.08 1.53 7.95 -2.39 -0.02 1.51 16 36 H 0.09 1.80 4.40 -2.39 -0.01 1.79 16 37 H 0.11 2.89 8.13 -2.39 -0.02 2.87 16 38 H 0.05 2.39 7.13 -2.39 -0.02 2.37 16 39 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.07 2.78 8.10 -2.38 -0.02 2.76 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.04 2.45 6.80 -2.39 -0.02 2.44 16 43 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -87.36 350.64 3.95 -83.41 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.01 Total: 11.86 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.29 Total: 16.45 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -4.68 Total: -123.10 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.41 Total: -41.34 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 1.81 Total: 53.62 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -87.36 3.95 -83.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085958420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.468 kcal (2) G-P(sol) polarization free energy of solvation -87.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds