Wall clock time and date at job start Tue Mar 31 2020 21:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35942 * 116.99989 * 2 1 4 4 C 1.38399 * 119.98877 * 0.25969 * 3 2 1 5 5 C 1.39550 * 119.81019 * 180.24851 * 4 3 2 6 6 C 1.47793 * 120.10855 * 179.76348 * 5 4 3 7 7 O 1.21560 * 120.00094 * 359.72810 * 6 5 4 8 8 N 1.34777 * 119.99933 * 179.71935 * 6 5 4 9 9 C 1.46502 * 120.00161 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47057 * 180.02562 * 9 8 6 11 11 H 1.09002 * 112.90771 * 316.25090 * 10 9 8 12 12 C 1.53779 * 113.61529 * 87.50494 * 10 9 8 13 13 C 1.53779 * 87.08402 * 139.98073 * 12 10 9 14 14 H 1.09000 * 113.61527 * 89.11480 * 13 12 10 15 15 N 1.46501 * 113.61719 * 220.02087 * 13 12 10 16 16 C 1.36937 * 119.99940 * 252.49670 * 15 13 12 17 17 H 1.07995 * 119.99838 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99758 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46803 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47215 * 119.99627 * 20 18 16 23 23 H 1.48496 * 109.46748 * 239.99992 * 20 18 16 24 24 C 1.53784 * 113.61233 * 185.00081 * 10 9 8 25 25 C 1.39626 * 119.78240 * 359.49275 * 5 4 3 26 26 C 1.37925 * 119.97471 * 0.25050 * 25 5 4 27 27 C 1.38420 * 120.19331 * 0.02562 * 26 25 5 28 28 Cl 1.73595 * 119.89130 * 180.02562 * 27 26 25 29 29 H 1.08992 * 109.47399 * 299.99748 * 1 2 3 30 30 H 1.08998 * 109.46963 * 60.00111 * 1 2 3 31 31 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08010 * 120.09751 * 0.02562 * 4 3 2 33 33 H 0.97005 * 119.99592 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.46583 * 60.00367 * 9 8 6 35 35 H 1.09001 * 109.46856 * 300.00825 * 9 8 6 36 36 H 1.09006 * 113.61307 * 25.43275 * 12 10 9 37 37 H 1.09007 * 113.61642 * 254.53032 * 12 10 9 38 38 H 0.97005 * 120.00129 * 72.49260 * 15 13 12 39 39 H 0.97007 * 119.99563 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.61451 * 105.47254 * 24 10 9 41 41 H 1.08994 * 113.61477 * 334.56556 * 24 10 9 42 42 H 1.07997 * 120.01356 * 180.23117 * 25 5 4 43 43 H 1.07999 * 119.90354 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2921 2.3718 0.0054 5 6 1.9295 3.6132 0.0002 6 6 1.1308 4.8567 0.0006 7 8 -0.0835 4.7992 0.0006 8 7 1.7487 6.0545 0.0013 9 6 0.9569 7.2872 0.0023 10 6 1.8950 8.4958 0.0022 11 1 2.7286 8.3860 0.6959 12 6 2.3203 8.9454 -1.4056 13 6 2.1641 10.3912 -0.9055 14 1 3.0712 10.7996 -0.4600 15 7 1.5577 11.2906 -1.8903 16 6 2.3258 12.2316 -2.5225 17 1 3.3785 12.3110 -2.2948 18 6 1.7514 13.0833 -3.4560 19 7 0.4685 12.9861 -3.7337 20 14 2.7993 14.3665 -4.3190 21 1 4.1994 14.2701 -3.8334 22 1 2.7657 14.1290 -5.7845 23 1 2.2658 15.7207 -4.0245 24 6 1.1639 9.8431 0.1261 25 6 3.3243 3.6767 0.0002 26 6 4.0670 2.5145 0.0001 27 6 3.4337 1.2837 -0.0004 28 17 4.3762 -0.1742 0.0002 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2134 2.3169 0.0101 33 1 2.7176 6.1004 0.0010 34 1 0.3286 7.3146 0.8925 35 1 0.3279 7.3157 -0.8874 36 1 1.6079 8.6735 -2.1846 37 1 3.3468 8.6791 -1.6576 38 1 0.6121 11.2194 -2.0946 39 1 0.0670 13.5817 -4.3858 40 1 1.2569 10.3014 1.1107 41 1 0.1356 9.8165 -0.2342 42 1 3.8215 4.6355 -0.0001 43 1 5.1458 2.5649 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086216417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:30 Heat of formation + Delta-G solvation = -23.145947 kcal Electronic energy + Delta-G solvation = -25435.397865 eV Core-core repulsion = 21507.786377 eV Total energy + Delta-G solvation = -3927.611488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94701 -39.75366 -38.56076 -37.71498 -36.72053 -34.86806 -33.36281 -31.63906 -30.84752 -30.20361 -28.12849 -27.15174 -25.13546 -24.39635 -23.61917 -22.76366 -21.15491 -20.90286 -19.33917 -18.77423 -17.16378 -17.09409 -16.83390 -16.74650 -16.31391 -15.89798 -15.47610 -14.97107 -14.72433 -14.64264 -14.28767 -14.03926 -13.76941 -13.58526 -13.31401 -13.00785 -12.96686 -12.37583 -11.99274 -11.93191 -11.90924 -11.85882 -11.56445 -11.43310 -11.27540 -11.25153 -10.87861 -10.57837 -10.37253 -10.15178 -10.01572 -9.86771 -9.54179 -9.44549 -9.14840 -8.90182 -8.73704 -6.99082 -5.80914 -3.09862 0.20805 0.76834 1.69200 2.44595 2.66549 2.93216 3.34185 3.40661 3.46205 3.48614 4.18849 4.29799 4.48286 4.51256 4.56081 4.72956 4.75747 4.84742 4.91024 4.93799 5.09986 5.15320 5.17854 5.41308 5.43860 5.46152 5.56751 5.70522 5.76231 5.80386 5.88736 5.97203 6.05620 6.16865 6.26233 6.31264 6.37601 6.55079 6.70086 6.78019 7.07235 7.29537 7.67113 7.97447 8.37577 9.48770 10.06875 10.40868 11.41448 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.001792 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.583191 B =15622.668449 C =16221.272877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.304 6.304 3 C 0.131 3.869 4 C -0.141 4.141 5 C -0.086 4.086 6 C 0.554 3.446 7 O -0.535 6.535 8 N -0.715 5.715 9 C 0.131 3.869 10 C -0.128 4.128 11 H 0.089 0.911 12 C -0.162 4.162 13 C 0.166 3.834 14 H 0.076 0.924 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.078 4.078 27 C -0.050 4.050 28 Cl -0.051 7.051 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.267 -27.014 11.173 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C 0.084 3.916 4 C -0.161 4.161 5 C -0.089 4.089 6 C 0.340 3.660 7 O -0.413 6.413 8 N -0.366 5.366 9 C 0.008 3.992 10 C -0.147 4.147 11 H 0.107 0.893 12 C -0.203 4.203 13 C 0.054 3.946 14 H 0.094 0.906 15 N -0.351 5.351 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.182 4.182 25 C -0.131 4.131 26 C -0.097 4.097 27 C -0.078 4.078 28 Cl -0.022 7.022 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.169 0.831 33 H 0.236 0.764 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.666 -27.183 11.084 29.724 hybrid contribution 0.529 0.679 -0.637 1.071 sum 5.194 -26.504 10.447 28.958 Atomic orbital electron populations 1.23198 0.77437 1.04546 1.02073 1.86170 1.22029 1.25256 1.88219 1.18543 0.90431 0.85299 0.97327 1.21319 1.01324 0.90087 1.03336 1.19894 0.93601 0.93460 1.01975 1.18136 0.87455 0.83423 0.77006 1.90790 1.13558 1.87318 1.49655 1.45978 1.10717 1.05702 1.74245 1.21517 0.93782 0.81432 1.02430 1.22655 0.98671 0.93422 1.00000 0.89296 1.23968 1.00551 1.01199 0.94555 1.21515 0.94966 0.88480 0.89666 0.90642 1.42421 1.09619 1.37809 1.45204 1.19345 0.92615 1.09088 1.16476 0.91028 1.24782 0.95999 1.00041 1.00168 1.69673 1.10138 1.40967 1.37168 0.86117 0.79291 0.81448 0.79321 1.20527 1.21844 1.21847 1.23453 1.00254 0.94021 1.00454 1.21214 0.92411 0.98764 1.00731 1.20877 1.00975 0.89339 0.98487 1.20419 0.88856 0.89208 1.09269 1.98382 1.71567 1.35459 1.96826 0.92093 0.92040 0.87645 0.83086 0.76384 0.91439 0.90890 0.90304 0.92727 0.78057 0.93485 0.91939 0.90064 0.84242 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -2.71 9.94 -19.56 -0.19 -2.91 16 3 C 0.13 1.23 6.67 -39.26 -0.26 0.97 16 4 C -0.14 -1.38 8.58 -39.03 -0.33 -1.71 16 5 C -0.09 -0.85 5.87 -104.98 -0.62 -1.47 16 6 C 0.55 6.75 7.77 -12.35 -0.10 6.65 16 7 O -0.54 -8.43 16.34 5.31 0.09 -8.34 16 8 N -0.72 -7.54 5.51 -61.27 -0.34 -7.88 16 9 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 10 C -0.13 -1.59 3.75 -89.81 -0.34 -1.93 16 11 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 12 C -0.16 -2.54 7.43 -25.92 -0.19 -2.73 16 13 C 0.17 3.09 4.48 -67.12 -0.30 2.79 16 14 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 15 N -0.71 -17.44 5.40 -52.64 -0.28 -17.72 16 16 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.14 -2.15 7.39 -25.91 -0.19 -2.35 16 25 C -0.11 -0.84 9.54 -39.18 -0.37 -1.21 16 26 C -0.08 -0.56 9.81 -39.63 -0.39 -0.95 16 27 C -0.05 -0.44 6.34 -39.25 -0.25 -0.69 16 28 Cl -0.05 -0.44 28.49 -51.86 -1.48 -1.92 16 29 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 31 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.15 1.43 5.88 -52.48 -0.31 1.12 16 33 H 0.40 3.13 6.50 -40.82 -0.27 2.87 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.03 7.84 -51.93 -0.41 0.63 16 36 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 10.07 7.92 -40.82 -0.32 9.75 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 42 H 0.14 0.70 6.40 -52.49 -0.34 0.36 16 43 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.91 376.88 -9.21 -42.12 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.77 Total: 8.29 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.62 Total: -7.21 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.10 Total: -52.79 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.11 Total: -11.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.91 -9.21 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086216417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.976 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds