Wall clock time and date at job start Tue Mar 31 2020 21:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35942 * 116.99989 * 2 1 4 4 C 1.38399 * 119.98877 * 0.25969 * 3 2 1 5 5 C 1.39550 * 119.81019 * 180.24851 * 4 3 2 6 6 C 1.47793 * 120.10855 * 179.76348 * 5 4 3 7 7 O 1.21560 * 120.00094 * 359.72810 * 6 5 4 8 8 N 1.34777 * 119.99933 * 179.71935 * 6 5 4 9 9 C 1.46502 * 120.00161 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47057 * 180.02562 * 9 8 6 11 11 H 1.09002 * 112.90771 * 316.25090 * 10 9 8 12 12 C 1.53779 * 113.61529 * 87.50494 * 10 9 8 13 13 C 1.53779 * 87.08402 * 139.98073 * 12 10 9 14 14 H 1.09000 * 113.61527 * 89.11480 * 13 12 10 15 15 N 1.46501 * 113.61719 * 220.02087 * 13 12 10 16 16 C 1.36937 * 119.99940 * 252.49670 * 15 13 12 17 17 H 1.07995 * 119.99838 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99758 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46803 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47215 * 119.99627 * 20 18 16 23 23 H 1.48496 * 109.46748 * 239.99992 * 20 18 16 24 24 C 1.53784 * 113.61233 * 185.00081 * 10 9 8 25 25 C 1.39626 * 119.78240 * 359.49275 * 5 4 3 26 26 C 1.37925 * 119.97471 * 0.25050 * 25 5 4 27 27 C 1.38420 * 120.19331 * 0.02562 * 26 25 5 28 28 Cl 1.73595 * 119.89130 * 180.02562 * 27 26 25 29 29 H 1.08992 * 109.47399 * 299.99748 * 1 2 3 30 30 H 1.08998 * 109.46963 * 60.00111 * 1 2 3 31 31 H 1.08999 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.08010 * 120.09751 * 0.02562 * 4 3 2 33 33 H 0.97005 * 119.99592 * 0.02562 * 8 6 5 34 34 H 1.08994 * 109.46583 * 60.00367 * 9 8 6 35 35 H 1.09001 * 109.46856 * 300.00825 * 9 8 6 36 36 H 1.09006 * 113.61307 * 25.43275 * 12 10 9 37 37 H 1.09007 * 113.61642 * 254.53032 * 12 10 9 38 38 H 0.97005 * 120.00129 * 72.49260 * 15 13 12 39 39 H 0.97007 * 119.99563 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.61451 * 105.47254 * 24 10 9 41 41 H 1.08994 * 113.61477 * 334.56556 * 24 10 9 42 42 H 1.07997 * 120.01356 * 180.23117 * 25 5 4 43 43 H 1.07999 * 119.90354 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2921 2.3718 0.0054 5 6 1.9295 3.6132 0.0002 6 6 1.1308 4.8567 0.0006 7 8 -0.0835 4.7992 0.0006 8 7 1.7487 6.0545 0.0013 9 6 0.9569 7.2872 0.0023 10 6 1.8950 8.4958 0.0022 11 1 2.7286 8.3860 0.6959 12 6 2.3203 8.9454 -1.4056 13 6 2.1641 10.3912 -0.9055 14 1 3.0712 10.7996 -0.4600 15 7 1.5577 11.2906 -1.8903 16 6 2.3258 12.2316 -2.5225 17 1 3.3785 12.3110 -2.2948 18 6 1.7514 13.0833 -3.4560 19 7 0.4685 12.9861 -3.7337 20 14 2.7993 14.3665 -4.3190 21 1 4.1994 14.2701 -3.8334 22 1 2.7657 14.1290 -5.7845 23 1 2.2658 15.7207 -4.0245 24 6 1.1639 9.8431 0.1261 25 6 3.3243 3.6767 0.0002 26 6 4.0670 2.5145 0.0001 27 6 3.4337 1.2837 -0.0004 28 17 4.3762 -0.1742 0.0002 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2134 2.3169 0.0101 33 1 2.7176 6.1004 0.0010 34 1 0.3286 7.3146 0.8925 35 1 0.3279 7.3157 -0.8874 36 1 1.6079 8.6735 -2.1846 37 1 3.3468 8.6791 -1.6576 38 1 0.6121 11.2194 -2.0946 39 1 0.0670 13.5817 -4.3858 40 1 1.2569 10.3014 1.1107 41 1 0.1356 9.8165 -0.2342 42 1 3.8215 4.6355 -0.0001 43 1 5.1458 2.5649 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086216417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:29 Heat of formation + Delta-G solvation = -44.635404 kcal Electronic energy + Delta-G solvation = -25436.329718 eV Core-core repulsion = 21507.786377 eV Total energy + Delta-G solvation = -3928.543341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68116 -40.64985 -39.77106 -38.39592 -37.39180 -36.12609 -35.06943 -32.51355 -32.02098 -31.37275 -29.00397 -28.02118 -26.42941 -25.93422 -24.76611 -23.39731 -22.44585 -21.78898 -20.56450 -19.69893 -18.99012 -17.87501 -17.70019 -17.38508 -16.92780 -16.87623 -16.57191 -16.45276 -15.98895 -15.55347 -15.24868 -15.08480 -14.90297 -14.72386 -14.49555 -14.17674 -13.59692 -13.41345 -13.20948 -13.04716 -12.99086 -12.87435 -12.67463 -12.57525 -12.49012 -12.16537 -12.14385 -12.04545 -11.89854 -11.61526 -11.53747 -11.18574 -10.97351 -10.79880 -10.23714 -10.00705 -9.38598 -8.95914 -7.93631 -5.21585 -0.50648 0.15245 1.04192 1.48344 1.48799 1.58847 1.63049 1.99270 2.16607 2.57636 2.60029 3.38331 3.50817 3.58885 3.75526 3.75592 3.84479 3.94150 3.97411 4.20336 4.28117 4.30245 4.31506 4.37501 4.44189 4.56810 4.59199 4.68568 4.73933 4.83964 4.96133 5.00369 5.01784 5.07120 5.07974 5.23632 5.31688 5.40860 5.43927 5.54567 5.75777 6.09717 6.29044 6.45689 7.09934 7.34434 8.13563 8.34490 9.30090 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.001792 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.583191 B =15622.668449 C =16221.272877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.121 3.879 4 C -0.151 4.151 5 C -0.101 4.101 6 C 0.553 3.447 7 O -0.580 6.580 8 N -0.702 5.702 9 C 0.137 3.863 10 C -0.095 4.095 11 H 0.126 0.874 12 C -0.154 4.154 13 C 0.142 3.858 14 H 0.082 0.918 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.081 0.919 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.972 3.028 21 H -0.262 1.262 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.137 4.137 25 C -0.100 4.100 26 C -0.072 4.072 27 C -0.059 4.059 28 Cl -0.052 7.052 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.417 0.583 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.371 0.629 39 H 0.249 0.751 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.170 0.830 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 -27.847 12.384 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.074 3.926 4 C -0.170 4.170 5 C -0.104 4.104 6 C 0.341 3.659 7 O -0.461 6.461 8 N -0.354 5.354 9 C 0.013 3.987 10 C -0.114 4.114 11 H 0.144 0.856 12 C -0.195 4.195 13 C 0.033 3.967 14 H 0.100 0.900 15 N -0.368 5.368 16 C -0.371 4.371 17 H 0.098 0.902 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.223 1.223 24 C -0.177 4.177 25 C -0.119 4.119 26 C -0.090 4.090 27 C -0.087 4.087 28 Cl -0.023 7.023 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.256 0.744 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.203 0.797 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.187 0.813 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.465 -28.052 12.340 31.543 hybrid contribution -0.294 0.840 -0.950 1.302 sum 7.172 -27.213 11.390 30.359 Atomic orbital electron populations 1.23401 0.76127 1.06026 1.02209 1.86149 1.23467 1.25223 1.88246 1.18655 0.90881 0.85307 0.97741 1.21317 1.01253 0.90500 1.03972 1.19797 0.94577 0.92216 1.03820 1.18485 0.87082 0.84337 0.76029 1.90769 1.15565 1.87938 1.51798 1.45794 1.11445 1.04677 1.73456 1.21305 0.93753 0.82128 1.01489 1.22484 0.98840 0.91836 0.98198 0.85613 1.23739 1.01004 0.98846 0.95882 1.21980 0.96063 0.88820 0.89879 0.89979 1.42657 1.08982 1.38631 1.46520 1.19779 0.93152 1.08658 1.15467 0.90154 1.25603 0.97184 1.02756 1.01861 1.69834 1.11911 1.42268 1.38351 0.85079 0.78533 0.78534 0.77676 1.18658 1.22388 1.22317 1.23336 0.98846 0.95522 0.99994 1.21504 0.91186 1.00245 0.98954 1.21217 1.02352 0.88396 0.97023 1.20704 0.88799 0.89918 1.09238 1.98382 1.71370 1.35695 1.96813 0.91823 0.92078 0.85507 0.83738 0.74432 0.91242 0.93265 0.92717 0.91069 0.79704 0.94191 0.90236 0.91584 0.81251 0.80619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -5.55 9.94 -92.90 -0.92 -6.47 16 3 C 0.12 2.20 6.67 22.48 0.15 2.35 16 4 C -0.15 -2.90 8.58 22.63 0.19 -2.70 16 5 C -0.10 -1.85 5.87 -20.10 -0.12 -1.97 16 6 C 0.55 12.91 7.77 86.77 0.67 13.59 16 7 O -0.58 -18.47 16.34 -3.90 -0.06 -18.54 16 8 N -0.70 -13.11 5.51 -466.03 -2.57 -15.68 16 9 C 0.14 3.13 5.51 86.38 0.48 3.60 16 10 C -0.09 -2.07 3.75 -10.27 -0.04 -2.11 16 11 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.15 -4.55 7.43 31.12 0.23 -4.32 16 13 C 0.14 5.10 4.48 45.52 0.20 5.30 16 14 H 0.08 2.83 8.10 -2.39 -0.02 2.82 16 15 N -0.73 -35.98 5.40 -320.44 -1.73 -37.71 16 16 C -0.24 -12.97 9.97 84.03 0.84 -12.14 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 19 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 20 Si 0.97 45.76 29.55 68.60 2.03 47.78 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 C -0.14 -3.95 7.39 31.12 0.23 -3.72 16 25 C -0.10 -1.18 9.54 22.53 0.21 -0.97 16 26 C -0.07 -0.82 9.81 22.24 0.22 -0.60 16 27 C -0.06 -0.94 6.34 22.48 0.14 -0.80 16 28 Cl -0.05 -0.81 28.49 -2.72 -0.08 -0.89 16 29 H 0.06 0.67 7.65 -2.39 -0.02 0.65 16 30 H 0.06 0.68 7.67 -2.39 -0.02 0.66 16 31 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.14 2.86 5.88 -2.91 -0.02 2.85 16 33 H 0.42 4.86 6.50 -92.70 -0.60 4.26 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 36 H 0.05 1.90 7.90 -2.38 -0.02 1.88 16 37 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.37 20.01 7.92 -92.70 -0.73 19.28 16 39 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 42 H 0.17 0.88 6.40 -2.91 -0.02 0.87 16 43 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -73.34 376.88 1.66 -71.68 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.28 Total: 26.75 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.00 Total: -7.41 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -4.01 Total: -112.91 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.99 Total: -25.01 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -73.34 1.66 -71.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086216417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.044 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds