Wall clock time and date at job start Tue Mar 31 2020 21:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35705 * 117.00138 * 2 1 4 4 C 1.39060 * 119.89854 * 0.02562 * 3 2 1 5 5 C 1.37645 * 120.12653 * 179.72177 * 4 3 2 6 6 C 1.39780 * 119.92272 * 0.51267 * 5 4 3 7 7 C 1.47526 * 120.10077 * 179.76823 * 6 5 4 8 8 O 1.21595 * 119.99989 * 179.71893 * 7 6 5 9 9 N 1.34783 * 120.00039 * 359.72220 * 7 6 5 10 10 C 1.46500 * 120.00119 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85043 * 314.66487 * 11 10 9 13 13 C 1.53785 * 113.69093 * 85.93603 * 11 10 9 14 14 C 1.53779 * 87.08093 * 139.99088 * 13 11 10 15 15 H 1.09003 * 113.61186 * 89.11185 * 14 13 11 16 16 N 1.46495 * 113.69143 * 220.00570 * 14 13 11 17 17 C 1.36936 * 120.00341 * 252.54056 * 16 14 13 18 18 H 1.08006 * 119.99760 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00459 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00101 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99655 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47211 * 90.00211 * 21 19 17 23 23 H 1.48505 * 109.47025 * 210.00030 * 21 19 17 24 24 H 1.48492 * 109.47202 * 330.00125 * 21 19 17 25 25 C 1.53781 * 113.61293 * 183.47228 * 11 10 9 26 26 C 1.39856 * 119.79942 * 359.48845 * 6 5 4 27 27 Cl 1.73604 * 120.06119 * 180.27779 * 26 6 5 28 28 C 1.37893 * 119.87647 * 0.25312 * 26 6 5 29 29 H 1.08994 * 109.46743 * 60.00271 * 1 2 3 30 30 H 1.09000 * 109.46377 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47126 * 299.99671 * 1 2 3 32 32 H 1.08008 * 119.94022 * 359.95440 * 4 3 2 33 33 H 1.08005 * 120.04049 * 180.25454 * 5 4 3 34 34 H 0.96997 * 119.99419 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.46936 * 59.99437 * 10 9 7 36 36 H 1.09004 * 109.46937 * 300.00111 * 10 9 7 37 37 H 1.09003 * 113.60734 * 254.54208 * 13 11 10 38 38 H 1.08996 * 113.61146 * 25.43706 * 13 11 10 39 39 H 0.97002 * 120.00038 * 72.53585 * 16 14 13 40 40 H 0.97002 * 119.99218 * 179.97438 * 20 19 17 41 41 H 1.09005 * 113.61302 * 334.47929 * 25 11 10 42 42 H 1.08993 * 113.62030 * 105.38774 * 25 11 10 43 43 H 1.08000 * 119.96500 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 1.2858 2.3741 0.0005 5 6 1.9058 3.6029 0.0063 6 6 3.3015 3.6798 0.0008 7 6 3.9701 4.9948 0.0018 8 8 5.1843 5.0595 0.0022 9 7 3.2350 6.1246 0.0024 10 6 3.8990 7.4305 0.0028 11 6 2.8443 8.5388 0.0028 12 1 2.0412 8.3588 -0.7119 13 6 2.3457 8.9173 1.4074 14 6 2.3663 10.3805 0.9347 15 1 1.4325 10.7040 0.4748 16 7 2.8571 11.3192 1.9467 17 6 1.9842 12.1663 2.5756 18 1 0.9338 12.1427 2.3252 19 6 2.4492 13.0554 3.5349 20 7 1.6101 13.8699 4.1390 21 14 4.2657 13.0957 3.9684 22 1 4.9633 14.0672 3.0881 23 1 4.4273 13.5076 5.3860 24 1 4.8507 11.7445 3.7758 25 6 3.4385 9.9546 -0.0821 26 6 4.0622 2.5062 0.0003 27 17 5.7960 2.5937 0.0008 28 6 3.4325 1.2795 -0.0001 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2074 2.3145 0.0002 33 1 1.3146 4.5068 0.0109 34 1 2.2664 6.0729 0.0018 35 1 4.5216 7.5218 -0.8872 36 1 4.5218 7.5211 0.8928 37 1 1.3460 8.5447 1.6309 38 1 3.0647 8.7037 2.1982 39 1 3.8005 11.3407 2.1714 40 1 1.9351 14.4909 4.8096 41 1 4.4564 10.0246 0.3016 42 1 3.3212 10.4195 -1.0609 43 1 4.0185 0.3723 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086226897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:32 Heat of formation + Delta-G solvation = -10.283274 kcal Electronic energy + Delta-G solvation = -25636.174488 eV Core-core repulsion = 21709.120767 eV Total energy + Delta-G solvation = -3927.053721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92820 -39.82424 -38.70133 -37.61138 -36.51058 -34.80885 -33.38303 -31.76611 -30.95023 -30.58651 -28.28001 -27.25192 -25.22377 -24.13866 -23.60001 -22.79171 -21.00927 -20.78642 -19.41937 -18.94848 -17.80682 -17.43374 -17.09231 -16.38838 -15.86627 -15.65820 -15.46675 -15.12934 -14.72764 -14.63617 -14.42164 -14.10604 -13.82887 -13.65537 -13.14236 -13.04301 -12.72128 -12.67769 -12.25969 -12.19229 -11.99695 -11.66683 -11.63707 -11.60445 -11.33279 -11.32337 -10.90019 -10.49995 -10.27901 -10.16400 -9.85042 -9.66676 -9.54031 -9.38003 -9.14121 -8.91433 -8.77436 -7.28531 -5.80017 -3.15503 0.35424 0.62975 1.73676 2.54334 2.70231 3.03078 3.36889 3.37080 3.40365 3.44957 4.06030 4.32699 4.43236 4.46993 4.57100 4.58720 4.66343 4.77488 4.85992 4.87181 4.92649 5.09517 5.20334 5.36638 5.40190 5.41346 5.58017 5.62713 5.67400 5.72219 5.78890 5.83038 5.86704 6.16049 6.16938 6.21807 6.36220 6.47853 6.66570 6.67954 6.96259 7.37743 7.96242 8.10809 8.39862 9.17723 9.90582 10.10317 11.38145 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.002113 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.369317 B =13246.657868 C =14144.162161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.165 3.835 4 C -0.214 4.214 5 C -0.031 4.031 6 C -0.167 4.167 7 C 0.553 3.447 8 O -0.519 6.519 9 N -0.721 5.721 10 C 0.134 3.866 11 C -0.127 4.127 12 H 0.091 0.909 13 C -0.161 4.161 14 C 0.172 3.828 15 H 0.084 0.916 16 N -0.737 5.737 17 C -0.248 4.248 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.276 1.276 25 C -0.145 4.145 26 C 0.053 3.947 27 Cl -0.020 7.020 28 C -0.158 4.158 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -29.872 -12.273 32.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.118 3.882 4 C -0.233 4.233 5 C -0.050 4.050 6 C -0.171 4.171 7 C 0.339 3.661 8 O -0.396 6.396 9 N -0.373 5.373 10 C 0.011 3.989 11 C -0.147 4.147 12 H 0.109 0.891 13 C -0.202 4.202 14 C 0.060 3.940 15 H 0.102 0.898 16 N -0.377 5.377 17 C -0.378 4.378 18 H 0.108 0.892 19 C -0.192 4.192 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.185 4.185 26 C 0.025 3.975 27 Cl 0.010 6.990 28 C -0.177 4.177 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.983 -29.805 -12.165 32.207 hybrid contribution 0.559 0.152 0.472 0.747 sum -0.424 -29.653 -11.693 31.878 Atomic orbital electron populations 1.23195 0.77429 1.04599 1.01907 1.86059 1.22137 1.26368 1.87674 1.19015 0.91632 0.84588 0.92972 1.21277 1.00834 0.91794 1.09387 1.21084 0.92496 0.98011 0.93450 1.19726 0.93445 0.93239 1.10675 1.17947 0.87114 0.83660 0.77343 1.90882 1.12873 1.87133 1.48700 1.45932 1.10139 1.05902 1.75371 1.21433 0.95097 0.80113 1.02271 1.22643 0.98093 0.94093 0.99826 0.89123 1.23919 1.00638 1.00943 0.94702 1.21503 0.95700 0.87767 0.88990 0.89826 1.42762 1.06977 1.42807 1.45118 1.19130 0.92030 1.11122 1.15516 0.89158 1.24702 0.97223 0.98326 0.98914 1.69707 1.33352 1.25269 1.29708 0.86554 0.86582 0.77655 0.77773 1.21012 1.21706 1.20258 1.23464 1.00422 0.93917 1.00673 1.20657 0.86942 0.92624 0.97284 1.98439 1.06302 1.98485 1.95775 1.20185 0.91773 0.97432 1.08344 0.92101 0.87723 0.92051 0.84108 0.84242 0.76768 0.91530 0.91154 0.92348 0.90417 0.80430 0.93030 0.90295 0.91593 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.17 10.48 -18.82 -0.20 -2.36 16 3 C 0.16 1.29 6.69 -39.03 -0.26 1.03 16 4 C -0.21 -1.40 9.01 -39.49 -0.36 -1.75 16 5 C -0.03 -0.23 9.53 -39.22 -0.37 -0.61 16 6 C -0.17 -1.74 5.88 -104.93 -0.62 -2.36 16 7 C 0.55 6.98 7.76 -12.47 -0.10 6.88 16 8 O -0.52 -8.27 13.96 5.28 0.07 -8.19 16 9 N -0.72 -7.70 5.51 -61.35 -0.34 -8.04 16 10 C 0.13 1.62 5.50 -4.04 -0.02 1.60 16 11 C -0.13 -1.53 3.75 -89.81 -0.34 -1.87 16 12 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.16 -2.45 7.44 -25.92 -0.19 -2.64 16 14 C 0.17 3.10 4.48 -67.12 -0.30 2.79 16 15 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 16 N -0.74 -17.07 5.21 -52.64 -0.27 -17.34 16 17 C -0.25 -6.90 10.45 -15.06 -0.16 -7.05 16 18 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 21 Si 0.88 22.11 27.73 -169.99 -4.71 17.39 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 25 C -0.15 -2.09 7.39 -25.92 -0.19 -2.28 16 26 C 0.05 0.57 6.35 -39.10 -0.25 0.32 16 27 Cl -0.02 -0.24 26.01 -51.86 -1.35 -1.59 16 28 C -0.16 -1.40 9.75 -39.46 -0.38 -1.79 16 29 H 0.06 0.13 7.65 -51.93 -0.40 -0.26 16 30 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.15 7.65 -51.93 -0.40 -0.25 16 32 H 0.14 0.54 6.27 -52.48 -0.33 0.21 16 33 H 0.14 0.69 6.40 -52.48 -0.34 0.35 16 34 H 0.40 3.16 6.49 -40.82 -0.27 2.89 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 39 H 0.36 8.33 5.79 -40.82 -0.24 8.09 16 40 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 41 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -34.32 370.25 -8.84 -43.15 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.75 Total: 6.40 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.64 Total: -6.64 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.16 Total: -53.74 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.12 Total: -10.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.35 Total: -1.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.32 -8.84 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086226897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.869 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds