Wall clock time and date at job start Tue Mar 31 2020 21:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35910 * 117.00061 * 2 1 4 4 C 1.38832 * 119.97330 * 359.97438 * 3 2 1 5 5 C 1.38352 * 120.22579 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.91028 * 179.97438 * 5 4 3 7 7 C 1.38140 * 120.18032 * 359.95651 * 5 4 3 8 8 C 1.39545 * 119.94588 * 0.06631 * 7 5 4 9 9 C 1.47864 * 120.10556 * 180.23298 * 8 7 5 10 10 O 1.21560 * 119.99814 * 179.72259 * 9 8 7 11 11 N 1.34771 * 120.00406 * 359.71968 * 9 8 7 12 12 C 1.46498 * 120.00365 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47243 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.84452 * 316.18981 * 13 12 11 15 15 C 1.53778 * 113.61492 * 87.50143 * 13 12 11 16 16 C 1.53782 * 87.07999 * 139.98339 * 15 13 12 17 17 H 1.08996 * 113.61746 * 89.11547 * 16 15 13 18 18 N 1.46506 * 113.68784 * 220.00969 * 16 15 13 19 19 C 1.36942 * 119.99613 * 252.53655 * 18 16 15 20 20 H 1.07997 * 120.00032 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99786 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99909 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99769 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47171 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46591 * 119.99808 * 23 21 19 26 26 H 1.48497 * 109.47159 * 239.99487 * 23 21 19 27 27 C 1.53778 * 113.61258 * 184.99983 * 13 12 11 28 28 C 1.38456 * 119.97964 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46978 * 299.99226 * 1 2 3 30 30 H 1.08999 * 109.47312 * 59.99937 * 1 2 3 31 31 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.88723 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.02193 * 180.02562 * 7 5 4 34 34 H 0.97008 * 119.99952 * 359.97438 * 11 9 8 35 35 H 1.09006 * 109.46888 * 299.99684 * 12 11 9 36 36 H 1.08996 * 109.47493 * 59.99430 * 12 11 9 37 37 H 1.09003 * 113.61383 * 254.52771 * 15 13 12 38 38 H 1.08991 * 113.61615 * 25.42980 * 15 13 12 39 39 H 0.97002 * 120.00345 * 72.52819 * 18 16 15 40 40 H 0.97007 * 119.99711 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.61539 * 334.56419 * 27 13 12 42 42 H 1.09004 * 113.62009 * 105.46918 * 27 13 12 43 43 H 1.08000 * 120.09131 * 0.03361 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9120 3.6104 -0.0011 6 17 0.9579 5.0607 -0.0024 7 6 3.2910 3.6931 -0.0002 8 6 4.0587 2.5279 -0.0001 9 6 5.5349 2.6123 0.0061 10 8 6.2018 1.5959 0.0112 11 7 6.1411 3.8159 0.0059 12 6 7.6037 3.8995 0.0115 13 6 8.0306 5.3688 0.0107 14 1 7.4553 5.9763 -0.6879 15 6 8.1380 5.9798 1.4178 16 6 9.4021 6.7019 0.9221 17 1 9.2016 7.6749 0.4738 18 7 10.4825 6.7427 1.9108 19 6 10.7892 7.9188 2.5417 20 1 10.2349 8.8163 2.3101 21 6 11.8132 7.9576 3.4780 22 7 12.4891 6.8639 3.7597 23 14 12.2320 9.5621 4.3381 24 1 11.3312 10.6361 3.8481 25 1 12.0555 9.3988 5.8035 26 1 13.6418 9.9265 4.0469 27 6 9.5509 5.5685 -0.1065 28 6 3.4287 1.2829 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2110 2.3158 -0.0014 33 1 3.7743 4.6589 -0.0002 34 1 5.6090 4.6270 0.0014 35 1 7.9923 3.4091 0.9041 36 1 7.9993 3.4054 -0.8759 37 1 7.3182 6.6545 1.6646 38 1 8.3328 5.2452 2.1991 39 1 10.9806 5.9366 2.1185 40 1 13.2045 6.8910 4.4143 41 1 10.1319 4.7214 0.2581 42 1 9.8718 5.9111 -1.0903 43 1 4.0180 0.3779 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086231102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:35 Heat of formation + Delta-G solvation = -23.823446 kcal Electronic energy + Delta-G solvation = -25386.220327 eV Core-core repulsion = 21458.579460 eV Total energy + Delta-G solvation = -3927.640867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94652 -39.79879 -38.56623 -37.86349 -36.65974 -34.84518 -33.34527 -31.63894 -31.00720 -30.15767 -27.88412 -27.44918 -25.10660 -24.35043 -23.50979 -23.02742 -21.11524 -20.80753 -19.33549 -18.76938 -17.24619 -17.04608 -16.76939 -16.61069 -16.33337 -15.92523 -15.48476 -15.16727 -14.81432 -14.67895 -14.27456 -14.04144 -13.85234 -13.57205 -13.27742 -12.96319 -12.87555 -12.55392 -12.39341 -11.92866 -11.83445 -11.74762 -11.53344 -11.42783 -11.28940 -11.23619 -10.86163 -10.55804 -10.35047 -10.13407 -9.99724 -9.84238 -9.52513 -9.47373 -9.09530 -8.88092 -8.83422 -6.96928 -5.78995 -3.07840 0.23938 0.68248 1.54209 2.45544 2.56389 3.06517 3.33766 3.42074 3.47623 3.50019 4.13694 4.30756 4.44228 4.56037 4.57728 4.62359 4.66554 4.76349 4.91699 4.94311 4.97900 5.04745 5.20731 5.45697 5.48051 5.50122 5.56581 5.70349 5.79225 5.79969 5.89024 5.92828 6.08156 6.19518 6.29046 6.34245 6.40460 6.58089 6.73344 6.80946 7.10024 7.31814 7.69028 7.99994 8.39547 9.50715 10.09004 10.43067 11.43394 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.001933 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.673842 B =14485.359060 C =15335.138285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.135 3.865 4 C -0.182 4.182 5 C -0.002 4.002 6 Cl -0.057 7.057 7 C -0.116 4.116 8 C -0.077 4.077 9 C 0.556 3.444 10 O -0.530 6.530 11 N -0.716 5.716 12 C 0.131 3.869 13 C -0.128 4.128 14 H 0.089 0.911 15 C -0.161 4.161 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.142 4.142 28 C -0.088 4.088 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.869 -10.553 -11.252 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.090 3.910 4 C -0.201 4.201 5 C -0.029 4.029 6 Cl -0.028 7.028 7 C -0.135 4.135 8 C -0.081 4.081 9 C 0.342 3.658 10 O -0.407 6.407 11 N -0.367 5.367 12 C 0.008 3.992 13 C -0.148 4.148 14 H 0.107 0.893 15 C -0.203 4.203 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.182 4.182 28 C -0.108 4.108 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.301 -11.134 -11.160 31.526 hybrid contribution -0.321 1.276 0.634 1.460 sum -27.622 -9.858 -10.526 31.161 Atomic orbital electron populations 1.23168 0.77776 1.04578 1.01647 1.86149 1.21828 1.25723 1.88407 1.18662 0.91793 0.84181 0.96412 1.21259 1.01052 0.90576 1.07234 1.20459 0.91565 0.87762 1.03079 1.98402 1.71746 1.35915 1.96760 1.21129 0.91696 0.98875 1.01828 1.19680 0.93468 0.92699 1.02226 1.18005 0.86624 0.83983 0.77161 1.90812 1.65708 1.34818 1.49385 1.45976 1.08679 1.07740 1.74286 1.21528 0.77873 0.97247 1.02507 1.22656 0.98293 0.93825 0.99984 0.89304 1.23962 1.01278 1.00447 0.94576 1.21518 0.88404 0.95062 0.89664 0.90663 1.42421 1.37436 1.10214 1.44979 1.19350 1.13126 0.88658 1.16363 0.91035 1.24777 0.98815 0.97220 1.00171 1.69673 1.24885 1.26414 1.36977 0.86119 0.77861 0.82905 0.79308 1.20539 1.21867 1.21848 1.23449 0.93280 1.00976 1.00446 1.20596 0.91287 0.98664 1.00243 0.92264 0.92306 0.87685 0.83897 0.84117 0.76412 0.90822 0.91363 0.92735 0.90276 0.78053 0.93495 0.90042 0.91944 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.49 10.49 -19.46 -0.20 -2.69 16 3 C 0.14 1.19 6.68 -39.28 -0.26 0.92 16 4 C -0.18 -1.36 8.81 -39.32 -0.35 -1.71 16 5 C 0.00 -0.01 6.31 -39.58 -0.25 -0.26 16 6 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.93 16 7 C -0.12 -0.98 9.32 -39.13 -0.36 -1.35 16 8 C -0.08 -0.80 5.87 -104.99 -0.62 -1.41 16 9 C 0.56 7.01 7.77 -12.32 -0.10 6.92 16 10 O -0.53 -8.58 16.35 5.31 0.09 -8.49 16 11 N -0.72 -7.88 5.51 -61.24 -0.34 -8.22 16 12 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 13 C -0.13 -1.64 3.75 -89.81 -0.34 -1.98 16 14 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.16 -2.59 7.43 -25.92 -0.19 -2.78 16 16 C 0.17 3.14 4.48 -67.11 -0.30 2.84 16 17 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 18 N -0.71 -17.60 5.40 -52.63 -0.28 -17.89 16 19 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 23 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.14 -2.19 7.39 -25.92 -0.19 -2.38 16 28 C -0.09 -0.90 9.53 -39.02 -0.37 -1.27 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 30 H 0.06 0.17 7.65 -51.93 -0.40 -0.22 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.14 0.75 6.28 -52.49 -0.33 0.42 16 33 H 0.14 0.95 6.40 -52.49 -0.34 0.61 16 34 H 0.40 3.41 6.50 -40.82 -0.27 3.15 16 35 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.41 7.89 -51.93 -0.41 1.00 16 39 H 0.39 10.16 7.92 -40.82 -0.32 9.84 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.15 1.63 7.65 -52.49 -0.40 1.23 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -32.75 377.60 -9.22 -41.97 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.77 Total: 8.79 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.61 Total: -7.10 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.10 Total: -53.48 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.12 Total: -11.19 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.75 -9.22 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086231102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.147 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds