Wall clock time and date at job start Tue Mar 31 2020 21:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35652 * 117.00191 * 2 1 4 4 C 1.38644 * 120.14165 * 0.24867 * 3 2 1 5 5 C 1.38205 * 120.07199 * 180.28061 * 4 3 2 6 6 Cl 1.73598 * 119.82058 * 179.76836 * 5 4 3 7 7 C 1.38699 * 120.36087 * 359.74838 * 5 4 3 8 8 C 1.37723 * 120.28893 * 359.97438 * 7 5 4 9 9 C 1.39749 * 119.91977 * 0.02587 * 8 7 5 10 10 C 1.47474 * 120.17752 * 179.97438 * 9 8 7 11 11 O 1.21603 * 120.00258 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00174 * 359.97438 * 10 9 8 13 13 C 1.46497 * 120.00028 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47017 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.84496 * 43.80429 * 14 13 12 16 16 C 1.53778 * 113.61196 * 174.99730 * 14 13 12 17 17 C 1.53787 * 87.08035 * 140.06532 * 16 14 13 18 18 H 1.08994 * 113.61447 * 220.02014 * 17 16 14 19 19 N 1.46496 * 113.61210 * 89.11438 * 17 16 14 20 20 C 1.36942 * 119.99927 * 155.00261 * 19 17 16 21 21 H 1.08001 * 119.99962 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99989 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00277 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00036 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.46891 * 60.00408 * 24 22 20 26 26 H 1.48496 * 109.47509 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47271 * 300.00750 * 24 22 20 28 28 C 1.53778 * 113.68969 * 272.53495 * 14 13 12 29 29 H 1.09008 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46742 * 299.99796 * 1 2 3 31 31 H 1.08993 * 109.47061 * 60.00240 * 1 2 3 32 32 H 1.08000 * 119.96201 * 0.02900 * 4 3 2 33 33 H 1.08000 * 119.85348 * 180.02562 * 7 5 4 34 34 H 1.08005 * 120.04098 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99784 * 0.02562 * 12 10 9 36 36 H 1.08994 * 109.47253 * 60.00133 * 13 12 10 37 37 H 1.08999 * 109.47048 * 300.00272 * 13 12 10 38 38 H 1.08998 * 113.61879 * 25.52015 * 16 14 13 39 39 H 1.08999 * 113.61887 * 254.61122 * 16 14 13 40 40 H 0.97002 * 120.00490 * 335.00104 * 19 17 16 41 41 H 0.96994 * 120.00158 * 179.97438 * 23 22 20 42 42 H 1.08993 * 113.61229 * 105.46192 * 28 14 13 43 43 H 1.09000 * 113.61263 * 334.55842 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 0.0052 5 6 1.9217 3.6039 -0.0007 6 17 0.9734 5.0581 -0.0002 7 6 3.3064 3.6835 -0.0065 8 6 4.0681 2.5361 -0.0060 9 6 3.4445 1.2855 -0.0001 10 6 4.2547 0.0532 -0.0001 11 8 3.7087 -1.0334 0.0046 12 7 5.6002 0.1312 -0.0063 13 6 6.4049 -1.0929 -0.0069 14 6 7.8905 -0.7267 -0.0138 15 1 8.1307 0.0801 0.6788 16 6 8.8250 -1.9418 0.1080 17 6 9.7290 -1.2511 -0.9268 18 1 10.1549 -1.9355 -1.6604 19 7 10.7274 -0.3595 -0.3315 20 6 11.8872 -0.0834 -1.0053 21 1 12.0656 -0.5226 -1.9757 22 6 12.8330 0.7618 -0.4415 23 7 12.6155 1.2975 0.7409 24 14 14.4154 1.1379 -1.3603 25 1 14.0924 1.7778 -2.6610 26 1 15.2518 2.0587 -0.5494 27 1 15.1600 -0.1242 -1.6010 28 6 8.4697 -0.5214 -1.4234 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2141 2.3188 0.0097 33 1 3.7893 4.6495 -0.0107 34 1 5.1461 2.6028 -0.0102 35 1 6.0357 0.9980 -0.0104 36 1 6.1712 -1.6809 -0.8943 37 1 6.1791 -1.6766 0.8856 38 1 8.3821 -2.8710 -0.2504 39 1 9.2847 -2.0424 1.0912 40 1 10.5671 0.0353 0.5399 41 1 13.2765 1.8878 1.1350 42 1 8.6424 0.5246 -1.6764 43 1 7.9295 -1.0623 -2.2004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086461221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:51 Heat of formation + Delta-G solvation = -20.566310 kcal Electronic energy + Delta-G solvation = -25848.847835 eV Core-core repulsion = 21921.348209 eV Total energy + Delta-G solvation = -3927.499627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93362 -39.36673 -38.37451 -38.00583 -36.69292 -34.63105 -33.23499 -31.68741 -30.68593 -30.10391 -27.92991 -27.12605 -25.05927 -24.26093 -23.53648 -22.68244 -21.67396 -20.66773 -19.01216 -18.35082 -17.54786 -17.17219 -16.93580 -16.21902 -15.82853 -15.54505 -15.29863 -15.14380 -14.84896 -14.27536 -14.12304 -14.07917 -13.75759 -13.50422 -13.19612 -12.93017 -12.86849 -12.36856 -12.29490 -12.15244 -11.91513 -11.79821 -11.43680 -11.38998 -11.23221 -11.04628 -10.83795 -10.49020 -10.21853 -10.11020 -9.77444 -9.69834 -9.46193 -9.41596 -8.98929 -8.88869 -8.65577 -7.01439 -5.82027 -3.11044 0.29530 0.85926 1.57004 2.59797 2.83278 3.13885 3.41558 3.46228 3.46998 3.47676 4.20327 4.43199 4.54643 4.54901 4.59416 4.76290 4.77953 4.99070 5.02746 5.06772 5.10570 5.17809 5.23682 5.44334 5.49043 5.62952 5.66243 5.72018 5.73105 5.87877 5.97584 6.04595 6.11333 6.21988 6.37475 6.43586 6.59488 6.74198 6.89194 6.90537 7.03916 7.52628 7.67432 8.24068 8.37303 9.47876 10.05476 10.39688 11.40348 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.002159 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.650051 B =12963.518291 C =14585.851003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.273 6.273 3 C 0.197 3.803 4 C -0.216 4.216 5 C 0.028 3.972 6 Cl -0.061 7.061 7 C -0.156 4.156 8 C -0.033 4.033 9 C -0.166 4.166 10 C 0.557 3.443 11 O -0.522 6.522 12 N -0.721 5.721 13 C 0.133 3.867 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.148 4.148 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.168 4.168 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.548 3.293 -0.705 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.184 6.184 3 C 0.148 3.852 4 C -0.235 4.235 5 C 0.001 3.999 6 Cl -0.032 7.032 7 C -0.175 4.175 8 C -0.052 4.052 9 C -0.170 4.170 10 C 0.343 3.657 11 O -0.399 6.399 12 N -0.374 5.374 13 C 0.010 3.990 14 C -0.139 4.139 15 H 0.111 0.889 16 C -0.187 4.187 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.210 4.210 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.748 2.426 -0.800 26.870 hybrid contribution 0.592 1.278 -0.142 1.415 sum -26.156 3.704 -0.941 26.434 Atomic orbital electron populations 1.23233 0.78442 1.04687 1.01356 1.86427 1.20981 1.24658 1.86322 1.18839 0.90795 0.84566 0.91010 1.21060 1.01001 0.90317 1.11143 1.20853 0.92010 0.87355 0.99684 1.98395 1.72321 1.35967 1.96493 1.20919 0.91270 0.99933 1.05396 1.21217 1.00468 0.90032 0.93467 1.19548 0.90881 0.94543 1.12000 1.17862 0.82163 0.88361 0.77309 1.90824 1.71652 1.28527 1.48909 1.45974 1.05578 1.10636 1.75187 1.21483 0.89770 0.85899 1.01848 1.22718 0.91272 1.00088 0.99800 0.88895 1.23443 0.97553 0.96297 1.01443 1.21056 0.88011 0.91683 0.93767 0.91979 1.42161 1.17286 1.53629 1.21338 1.19248 0.94542 1.22956 1.00617 0.91050 1.24759 0.98938 1.00174 0.96993 1.69646 1.36080 1.35855 1.16533 0.86247 0.83300 0.77785 0.78725 1.21218 1.21688 1.21200 1.23892 1.00416 1.02150 0.94494 0.87622 0.92399 0.92391 0.83748 0.83888 0.83607 0.76518 0.91467 0.91721 0.90438 0.91319 0.78112 0.93386 0.91517 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.27 -3.23 8.57 -40.55 -0.35 -3.57 16 3 C 0.20 2.19 6.70 -38.71 -0.26 1.93 16 4 C -0.22 -1.89 8.80 -39.44 -0.35 -2.24 16 5 C 0.03 0.24 6.32 -39.42 -0.25 -0.01 16 6 Cl -0.06 -0.47 28.94 -51.86 -1.50 -1.97 16 7 C -0.16 -1.29 9.80 -39.60 -0.39 -1.68 16 8 C -0.03 -0.30 9.53 -39.21 -0.37 -0.67 16 9 C -0.17 -1.92 5.89 -104.84 -0.62 -2.54 16 10 C 0.56 7.77 7.76 -12.49 -0.10 7.67 16 11 O -0.52 -9.08 15.16 -16.61 -0.25 -9.33 16 12 N -0.72 -8.94 5.51 -61.37 -0.34 -9.28 16 13 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 14 C -0.12 -1.75 3.63 -89.81 -0.33 -2.08 16 15 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 16 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 17 C 0.17 3.20 4.56 -67.12 -0.31 2.89 16 18 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 19 N -0.71 -17.08 5.31 -52.64 -0.28 -17.36 16 20 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.17 -2.73 7.43 -25.92 -0.19 -2.93 16 29 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 32 H 0.14 0.95 6.30 -52.49 -0.33 0.62 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.15 1.02 6.40 -52.48 -0.34 0.68 16 35 H 0.40 4.14 6.50 -40.82 -0.27 3.88 16 36 H 0.07 0.93 7.85 -51.93 -0.41 0.53 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -32.75 375.30 -9.78 -42.52 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.79 Total: 9.64 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.62 Total: -6.47 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.11 Total: -53.42 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.60 Total: -12.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.75 -9.78 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086461221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.957 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds