Wall clock time and date at job start Tue Mar 31 2020 21:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35932 * 117.00114 * 2 1 4 4 C 1.38406 * 119.98644 * 359.97438 * 3 2 1 5 5 C 1.39552 * 119.80831 * 180.02562 * 4 3 2 6 6 C 1.47796 * 120.10924 * 179.97438 * 5 4 3 7 7 O 1.21562 * 119.99884 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00205 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00234 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.90903 * 43.74420 * 10 9 8 12 12 C 1.53784 * 113.61330 * 174.99792 * 10 9 8 13 13 C 1.53787 * 87.07923 * 139.97966 * 12 10 9 14 14 H 1.08997 * 113.61087 * 219.93398 * 13 12 10 15 15 N 1.46503 * 113.61181 * 89.11654 * 13 12 10 16 16 C 1.36936 * 119.99871 * 154.99790 * 15 13 12 17 17 H 1.07999 * 119.99965 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99829 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99615 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00243 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46881 * 90.00190 * 20 18 16 22 22 H 1.48497 * 109.47282 * 210.00073 * 20 18 16 23 23 H 1.48498 * 109.47330 * 330.00262 * 20 18 16 24 24 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 25 25 C 1.39627 * 119.78273 * 0.25655 * 5 4 3 26 26 C 1.37928 * 119.97592 * 359.48934 * 25 5 4 27 27 C 1.38414 * 120.18995 * 0.53609 * 26 25 5 28 28 Cl 1.73597 * 119.88950 * 179.72124 * 27 26 25 29 29 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47391 * 300.00470 * 1 2 3 31 31 H 1.08997 * 109.47059 * 60.01042 * 1 2 3 32 32 H 1.07994 * 120.09803 * 0.02959 * 4 3 2 33 33 H 0.97005 * 119.99833 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47092 * 59.99495 * 9 8 6 35 35 H 1.08995 * 109.46661 * 299.99459 * 9 8 6 36 36 H 1.09004 * 113.61451 * 25.43452 * 12 10 9 37 37 H 1.08994 * 113.61477 * 254.52754 * 12 10 9 38 38 H 0.96997 * 119.99779 * 335.00324 * 15 13 12 39 39 H 0.97004 * 119.99805 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.61111 * 139.98327 * 24 13 12 41 41 H 1.08999 * 113.61280 * 270.79710 * 24 13 12 42 42 H 1.07998 * 120.01264 * 179.74695 * 25 5 4 43 43 H 1.07990 * 119.90563 * 180.25420 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2921 2.3718 -0.0005 5 6 1.9295 3.6132 -0.0011 6 6 1.1308 4.8567 -0.0022 7 8 -0.0835 4.7992 -0.0032 8 7 1.7486 6.0545 -0.0033 9 6 0.9570 7.2872 -0.0050 10 6 1.8951 8.4958 -0.0052 11 1 2.7288 8.3856 -0.6987 12 6 1.1640 9.8430 -0.1298 13 6 2.1639 10.3916 0.9017 14 1 1.7129 11.0621 1.6332 15 7 3.3833 10.9401 0.3029 16 6 4.1076 11.8898 0.9726 17 1 3.7798 12.2347 1.9422 18 6 5.2626 12.4099 0.4050 19 7 5.9591 13.3224 1.0491 20 14 5.8292 11.8140 -1.2722 21 1 5.2245 12.6634 -2.3296 22 1 7.3094 11.9004 -1.3542 23 1 5.4042 10.4044 -1.4663 24 6 2.3201 8.9460 1.4024 25 6 3.3243 3.6766 -0.0065 26 6 4.0670 2.5144 -0.0006 27 6 3.4337 1.2836 -0.0006 28 17 4.3762 -0.1742 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2135 2.3168 -0.0005 33 1 2.7176 6.1004 -0.0029 34 1 0.3278 7.3161 0.8847 35 1 0.3288 7.3142 -0.8953 36 1 0.1355 9.8166 0.2303 37 1 1.2572 10.3009 -1.1146 38 1 3.6774 10.6307 -0.5681 39 1 6.7660 13.6862 0.6522 40 1 3.3465 8.6798 1.6547 41 1 1.6086 8.6749 2.1824 42 1 3.8215 4.6354 -0.0111 43 1 5.1458 2.5648 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086497017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:40 Heat of formation + Delta-G solvation = -17.732038 kcal Electronic energy + Delta-G solvation = -25713.067016 eV Core-core repulsion = 21785.690292 eV Total energy + Delta-G solvation = -3927.376723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96088 -39.80657 -38.75075 -37.73121 -36.71767 -34.94873 -33.33351 -31.65689 -30.91416 -30.54954 -28.24004 -27.30572 -25.24804 -24.37383 -23.33697 -22.76512 -21.81479 -20.89556 -19.25606 -18.45220 -17.72929 -17.14790 -16.85939 -16.74613 -16.32689 -15.91964 -15.52806 -15.04088 -14.68416 -14.51787 -14.31082 -14.17589 -13.83678 -13.64570 -13.47551 -13.00675 -12.85488 -12.58016 -12.35495 -12.12042 -11.96412 -11.92014 -11.69033 -11.52490 -11.42476 -11.24651 -10.96385 -10.57806 -10.44528 -10.24106 -10.02712 -9.72693 -9.60048 -9.45280 -9.19776 -8.96749 -8.73985 -7.35935 -5.84528 -3.21102 0.20080 0.77063 1.69850 2.42435 2.65482 2.90602 3.29522 3.32568 3.33109 3.39285 4.19323 4.27813 4.47579 4.51064 4.52364 4.71254 4.73405 4.83780 4.84231 4.86612 5.00259 5.07787 5.16209 5.33638 5.34361 5.42619 5.43843 5.57960 5.68648 5.70963 5.78247 5.83953 5.97131 6.06050 6.16499 6.20343 6.41891 6.55755 6.66293 6.69411 6.82789 7.26075 7.92879 7.93287 8.35055 9.12567 9.84680 10.03689 11.33500 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002190 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.068791 B =12783.509342 C =14160.436420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.130 3.870 4 C -0.141 4.141 5 C -0.088 4.088 6 C 0.555 3.445 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.130 3.870 10 C -0.125 4.125 11 H 0.090 0.910 12 C -0.148 4.148 13 C 0.172 3.828 14 H 0.072 0.928 15 N -0.730 5.730 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.278 1.278 24 C -0.167 4.167 25 C -0.111 4.111 26 C -0.077 4.077 27 C -0.049 4.049 28 Cl -0.051 7.051 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.151 0.849 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.140 0.860 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 -27.409 -3.199 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.083 3.917 4 C -0.161 4.161 5 C -0.091 4.091 6 C 0.341 3.659 7 O -0.416 6.416 8 N -0.367 5.367 9 C 0.008 3.992 10 C -0.143 4.143 11 H 0.109 0.891 12 C -0.188 4.188 13 C 0.061 3.939 14 H 0.090 0.910 15 N -0.370 5.370 16 C -0.377 4.377 17 H 0.110 0.890 18 C -0.191 4.191 19 N -0.578 5.578 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.208 4.208 25 C -0.130 4.130 26 C -0.096 4.096 27 C -0.077 4.077 28 Cl -0.022 7.022 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.169 0.831 33 H 0.238 0.762 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.811 -27.532 -3.031 29.384 hybrid contribution 0.926 -0.389 -1.222 1.582 sum -8.886 -27.920 -4.253 29.607 Atomic orbital electron populations 1.23191 0.77498 1.04519 1.02014 1.86170 1.21980 1.25264 1.88247 1.18534 0.90422 0.85280 0.97430 1.21297 1.01247 0.90073 1.03455 1.19877 0.93587 0.93424 1.02207 1.18135 0.87418 0.83426 0.76874 1.90775 1.13549 1.87376 1.49929 1.45995 1.10900 1.05654 1.74128 1.21542 0.93804 0.81708 1.02186 1.22772 0.98514 0.93050 1.00007 0.89149 1.23465 0.99122 0.94846 1.01347 1.21003 0.87127 0.91971 0.93820 0.91008 1.42514 1.26113 1.47686 1.20665 1.19108 1.03653 1.12746 1.02218 0.89017 1.24692 0.97602 0.98631 0.98138 1.69702 1.18300 1.31366 1.38470 0.86555 0.78102 0.78341 0.85490 1.21016 1.21663 1.20424 1.23868 1.01384 1.01119 0.94421 1.21247 0.92429 0.98868 1.00492 1.20897 1.01074 0.89320 0.98317 1.20426 0.88860 0.89235 1.09142 1.98384 1.71568 1.35402 1.96811 0.87663 0.92094 0.92119 0.83124 0.76171 0.91066 0.91467 0.89933 0.91367 0.80531 0.92954 0.91289 0.90880 0.84184 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -2.72 9.94 -19.53 -0.19 -2.92 16 3 C 0.13 1.24 6.67 -39.26 -0.26 0.98 16 4 C -0.14 -1.38 8.58 -39.03 -0.33 -1.71 16 5 C -0.09 -0.88 5.87 -104.98 -0.62 -1.50 16 6 C 0.56 6.69 7.77 -12.35 -0.10 6.59 16 7 O -0.54 -8.14 16.34 5.31 0.09 -8.06 16 8 N -0.72 -7.67 5.51 -61.27 -0.34 -8.01 16 9 C 0.13 1.52 5.51 -4.04 -0.02 1.50 16 10 C -0.12 -1.60 3.63 -89.81 -0.33 -1.93 16 11 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 12 C -0.15 -2.07 7.39 -25.91 -0.19 -2.26 16 13 C 0.17 3.06 4.56 -67.12 -0.31 2.75 16 14 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 15 N -0.73 -16.26 5.11 -52.64 -0.27 -16.53 16 16 C -0.25 -6.72 10.45 -15.06 -0.16 -6.88 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -28.56 13.97 55.49 0.78 -27.79 16 20 Si 0.88 21.30 27.73 -169.99 -4.71 16.59 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 24 C -0.17 -2.47 7.43 -25.92 -0.19 -2.67 16 25 C -0.11 -0.91 9.54 -39.18 -0.37 -1.28 16 26 C -0.08 -0.61 9.81 -39.63 -0.39 -1.00 16 27 C -0.05 -0.45 6.34 -39.25 -0.25 -0.70 16 28 Cl -0.05 -0.46 28.49 -51.86 -1.48 -1.93 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.15 1.40 5.88 -52.49 -0.31 1.09 16 33 H 0.40 3.55 6.50 -40.82 -0.27 3.29 16 34 H 0.07 0.86 7.85 -51.93 -0.41 0.45 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.36 7.88 5.76 -40.82 -0.24 7.65 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.98 7.90 -51.93 -0.41 0.56 16 42 H 0.14 0.86 6.40 -52.49 -0.34 0.53 16 43 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -32.87 373.62 -8.85 -41.72 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.73 Total: 8.24 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.62 Total: -6.94 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.17 Total: -52.33 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.11 Total: -10.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.48 Total: -1.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.87 -8.85 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086497017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.983 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds