Wall clock time and date at job start Tue Mar 31 2020 21:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35932 * 117.00114 * 2 1 4 4 C 1.38406 * 119.98644 * 359.97438 * 3 2 1 5 5 C 1.39552 * 119.80831 * 180.02562 * 4 3 2 6 6 C 1.47796 * 120.10924 * 179.97438 * 5 4 3 7 7 O 1.21562 * 119.99884 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00205 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00234 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.90903 * 43.74420 * 10 9 8 12 12 C 1.53784 * 113.61330 * 174.99792 * 10 9 8 13 13 C 1.53787 * 87.07923 * 139.97966 * 12 10 9 14 14 H 1.08997 * 113.61087 * 219.93398 * 13 12 10 15 15 N 1.46503 * 113.61181 * 89.11654 * 13 12 10 16 16 C 1.36936 * 119.99871 * 154.99790 * 15 13 12 17 17 H 1.07999 * 119.99965 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99829 * 180.02562 * 16 15 13 19 19 N 1.31627 * 119.99615 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00243 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46881 * 90.00190 * 20 18 16 22 22 H 1.48497 * 109.47282 * 210.00073 * 20 18 16 23 23 H 1.48498 * 109.47330 * 330.00262 * 20 18 16 24 24 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 25 25 C 1.39627 * 119.78273 * 0.25655 * 5 4 3 26 26 C 1.37928 * 119.97592 * 359.48934 * 25 5 4 27 27 C 1.38414 * 120.18995 * 0.53609 * 26 25 5 28 28 Cl 1.73597 * 119.88950 * 179.72124 * 27 26 25 29 29 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47391 * 300.00470 * 1 2 3 31 31 H 1.08997 * 109.47059 * 60.01042 * 1 2 3 32 32 H 1.07994 * 120.09803 * 0.02959 * 4 3 2 33 33 H 0.97005 * 119.99833 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47092 * 59.99495 * 9 8 6 35 35 H 1.08995 * 109.46661 * 299.99459 * 9 8 6 36 36 H 1.09004 * 113.61451 * 25.43452 * 12 10 9 37 37 H 1.08994 * 113.61477 * 254.52754 * 12 10 9 38 38 H 0.96997 * 119.99779 * 335.00324 * 15 13 12 39 39 H 0.97004 * 119.99805 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.61111 * 139.98327 * 24 13 12 41 41 H 1.08999 * 113.61280 * 270.79710 * 24 13 12 42 42 H 1.07998 * 120.01264 * 179.74695 * 25 5 4 43 43 H 1.07990 * 119.90563 * 180.25420 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2921 2.3718 -0.0005 5 6 1.9295 3.6132 -0.0011 6 6 1.1308 4.8567 -0.0022 7 8 -0.0835 4.7992 -0.0032 8 7 1.7486 6.0545 -0.0033 9 6 0.9570 7.2872 -0.0050 10 6 1.8951 8.4958 -0.0052 11 1 2.7288 8.3856 -0.6987 12 6 1.1640 9.8430 -0.1298 13 6 2.1639 10.3916 0.9017 14 1 1.7129 11.0621 1.6332 15 7 3.3833 10.9401 0.3029 16 6 4.1076 11.8898 0.9726 17 1 3.7798 12.2347 1.9422 18 6 5.2626 12.4099 0.4050 19 7 5.9591 13.3224 1.0491 20 14 5.8292 11.8140 -1.2722 21 1 5.2245 12.6634 -2.3296 22 1 7.3094 11.9004 -1.3542 23 1 5.4042 10.4044 -1.4663 24 6 2.3201 8.9460 1.4024 25 6 3.3243 3.6766 -0.0065 26 6 4.0670 2.5144 -0.0006 27 6 3.4337 1.2836 -0.0006 28 17 4.3762 -0.1742 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2135 2.3168 -0.0005 33 1 2.7176 6.1004 -0.0029 34 1 0.3278 7.3161 0.8847 35 1 0.3288 7.3142 -0.8953 36 1 0.1355 9.8166 0.2303 37 1 1.2572 10.3009 -1.1146 38 1 3.6774 10.6307 -0.5681 39 1 6.7660 13.6862 0.6522 40 1 3.3465 8.6798 1.6547 41 1 1.6086 8.6749 2.1824 42 1 3.8215 4.6354 -0.0111 43 1 5.1458 2.5648 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086497017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:39 Heat of formation + Delta-G solvation = -39.283502 kcal Electronic energy + Delta-G solvation = -25714.001557 eV Core-core repulsion = 21785.690292 eV Total energy + Delta-G solvation = -3928.311265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69392 -40.69762 -39.90663 -38.41149 -37.40887 -36.14868 -35.02466 -32.77720 -32.22114 -31.41551 -29.12163 -28.07664 -26.43970 -25.63395 -24.71661 -23.47149 -23.01007 -21.74437 -20.33712 -19.64778 -19.47194 -17.87719 -17.69301 -17.40226 -16.93021 -16.84591 -16.57149 -16.44677 -16.03535 -15.51641 -15.24595 -15.05605 -14.89448 -14.73459 -14.60449 -14.30072 -14.04696 -13.60192 -13.36132 -13.11268 -13.00779 -12.95459 -12.69508 -12.58624 -12.48860 -12.17971 -12.14857 -11.91640 -11.86858 -11.64516 -11.56348 -11.17491 -10.94621 -10.80881 -10.23812 -10.01843 -9.40169 -9.27799 -8.01050 -5.34776 -0.52324 0.13041 1.02504 1.38618 1.43499 1.50588 1.61814 1.99595 2.16021 2.49873 2.58294 3.29252 3.49040 3.53241 3.57397 3.74746 3.83357 3.84999 3.92163 4.03094 4.19049 4.28952 4.30524 4.32358 4.38929 4.56383 4.67593 4.70774 4.73798 4.83000 4.95035 4.95617 4.99810 5.05000 5.10196 5.22693 5.33383 5.37615 5.47581 5.56381 5.82569 6.09471 6.24231 6.42556 7.06558 7.09715 7.86524 8.05227 9.20426 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002190 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.068791 B =12783.509342 C =14160.436420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.123 3.877 4 C -0.147 4.147 5 C -0.101 4.101 6 C 0.556 3.444 7 O -0.574 6.574 8 N -0.708 5.708 9 C 0.138 3.862 10 C -0.105 4.105 11 H 0.093 0.907 12 C -0.133 4.133 13 C 0.144 3.856 14 H 0.056 0.944 15 N -0.733 5.733 16 C -0.231 4.231 17 H 0.055 0.945 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.957 3.043 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.245 1.245 24 C -0.155 4.155 25 C -0.104 4.104 26 C -0.074 4.074 27 C -0.059 4.059 28 Cl -0.052 7.052 29 H 0.126 0.874 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.413 0.587 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.367 0.633 39 H 0.257 0.743 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.163 0.837 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 -29.455 -4.668 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.076 3.924 4 C -0.167 4.167 5 C -0.104 4.104 6 C 0.344 3.656 7 O -0.455 6.455 8 N -0.359 5.359 9 C 0.014 3.986 10 C -0.124 4.124 11 H 0.111 0.889 12 C -0.172 4.172 13 C 0.035 3.965 14 H 0.074 0.926 15 N -0.375 5.375 16 C -0.362 4.362 17 H 0.073 0.927 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.784 3.216 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.169 1.169 24 C -0.196 4.196 25 C -0.123 4.123 26 C -0.092 4.092 27 C -0.087 4.087 28 Cl -0.023 7.023 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.251 0.749 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.180 0.820 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.183 -29.628 -4.499 31.651 hybrid contribution 0.931 0.237 -0.644 1.157 sum -9.252 -29.391 -5.142 31.239 Atomic orbital electron populations 1.23420 0.76016 1.06062 1.02318 1.86153 1.23584 1.25139 1.88201 1.18636 0.90739 0.85427 0.97611 1.21322 1.01344 0.90257 1.03798 1.19818 0.94323 0.92572 1.03686 1.18377 0.87068 0.84115 0.76063 1.90756 1.15124 1.87880 1.51785 1.45904 1.11446 1.05086 1.73462 1.21394 0.93431 0.81389 1.02338 1.22589 0.98426 0.93082 0.98292 0.88914 1.23365 0.99340 0.94565 0.99972 1.21352 0.86660 0.93131 0.95405 0.92580 1.42421 1.27146 1.47146 1.20766 1.19055 1.03555 1.12731 1.00880 0.92668 1.25547 0.98129 0.99400 1.02765 1.69898 1.19129 1.33697 1.40838 0.85387 0.76818 0.79516 0.79901 1.20733 1.22515 1.16903 1.23716 1.01206 0.98345 0.96285 1.21471 0.91572 0.99989 0.99260 1.21179 1.02232 0.88599 0.97191 1.20678 0.88949 0.89762 1.09283 1.98382 1.71455 1.35629 1.96815 0.85548 0.91828 0.91782 0.83282 0.74910 0.91186 0.91167 0.87545 0.91351 0.79902 0.93395 0.92694 0.89117 0.81952 0.81080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.32 -5.42 9.94 -92.78 -0.92 -6.34 16 3 C 0.12 2.22 6.67 22.48 0.15 2.37 16 4 C -0.15 -2.74 8.58 22.63 0.19 -2.55 16 5 C -0.10 -1.86 5.87 -20.10 -0.12 -1.98 16 6 C 0.56 12.36 7.77 86.77 0.67 13.04 16 7 O -0.57 -16.73 16.34 -3.91 -0.06 -16.79 16 8 N -0.71 -13.15 5.51 -466.03 -2.57 -15.72 16 9 C 0.14 2.77 5.51 86.38 0.48 3.25 16 10 C -0.11 -2.36 3.63 -10.27 -0.04 -2.40 16 11 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 12 C -0.13 -3.33 7.39 31.12 0.23 -3.10 16 13 C 0.14 4.91 4.56 45.52 0.21 5.11 16 14 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 15 N -0.73 -31.84 5.11 -320.44 -1.64 -33.48 16 16 C -0.23 -12.74 10.45 84.03 0.88 -11.86 16 17 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 18 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 19 N -0.99 -62.19 13.97 21.65 0.30 -61.88 16 20 Si 0.96 43.59 27.73 68.60 1.90 45.49 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 24 C -0.16 -4.24 7.43 31.12 0.23 -4.01 16 25 C -0.10 -1.42 9.54 22.53 0.21 -1.20 16 26 C -0.07 -0.98 9.81 22.24 0.22 -0.76 16 27 C -0.06 -1.00 6.34 22.48 0.14 -0.85 16 28 Cl -0.05 -0.86 28.49 -2.72 -0.08 -0.94 16 29 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 31 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 32 H 0.15 2.72 5.88 -2.91 -0.02 2.70 16 33 H 0.41 5.86 6.50 -92.70 -0.60 5.26 16 34 H 0.07 1.48 7.85 -2.38 -0.02 1.46 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.37 15.06 5.76 -92.71 -0.53 14.53 16 39 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 2.18 7.90 -2.39 -0.02 2.16 16 42 H 0.16 1.39 6.40 -2.91 -0.02 1.37 16 43 H 0.17 1.42 8.06 -2.92 -0.02 1.40 16 Total: -1.00 -72.76 373.62 1.84 -70.92 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.14 Total: 25.78 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 5.04 Total: -7.04 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -3.90 Total: -111.08 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.99 Total: -23.13 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.49 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -72.76 1.84 -70.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086497017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.634 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds