Wall clock time and date at job start Tue Mar 31 2020 21:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35716 * 116.99893 * 2 1 4 4 C 1.39061 * 119.89707 * 179.97438 * 3 2 1 5 5 C 1.37645 * 120.12287 * 180.02562 * 4 3 2 6 6 C 1.39785 * 119.92391 * 0.02562 * 5 4 3 7 7 C 1.47530 * 120.10094 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00322 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99551 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99616 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.08999 * 112.85291 * 316.19669 * 11 10 9 13 13 C 1.53779 * 113.69159 * 87.46292 * 11 10 9 14 14 C 1.53774 * 87.08337 * 139.99144 * 13 11 10 15 15 H 1.08997 * 113.69714 * 220.01164 * 14 13 11 16 16 N 1.46504 * 113.61455 * 89.11402 * 14 13 11 17 17 C 1.36943 * 119.99781 * 107.50577 * 16 14 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 14 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.53783 * 113.61385 * 184.99818 * 11 10 9 26 26 C 1.39851 * 119.79931 * 0.25222 * 6 5 4 27 27 Cl 1.73604 * 120.05979 * 179.72296 * 26 6 5 28 28 C 1.37896 * 119.87831 * 359.49550 * 26 6 5 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47294 * 299.99790 * 1 2 3 31 31 H 1.09004 * 109.47071 * 59.99611 * 1 2 3 32 32 H 1.07994 * 119.94402 * 0.04857 * 4 3 2 33 33 H 1.07997 * 120.04242 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00466 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47509 * 59.99697 * 10 9 7 36 36 H 1.08997 * 109.46881 * 299.99496 * 10 9 7 37 37 H 1.09004 * 113.61687 * 25.44235 * 13 11 10 38 38 H 1.08995 * 113.61898 * 254.54275 * 13 11 10 39 39 H 0.97000 * 120.00410 * 287.50903 * 16 14 13 40 40 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 41 41 H 1.09004 * 113.61197 * 105.38597 * 25 11 10 42 42 H 1.08995 * 113.61664 * 334.48227 * 25 11 10 43 43 H 1.07998 * 119.96587 * 180.25056 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4339 1.2796 0.0005 5 6 4.0636 2.5035 0.0011 6 6 3.3053 3.6778 0.0016 7 6 3.9762 4.9918 0.0028 8 8 3.3149 6.0121 0.0028 9 7 5.3222 5.0611 0.0028 10 6 5.9884 6.3659 0.0045 11 6 7.5050 6.1641 0.0047 12 1 7.8288 5.3889 0.6992 13 6 8.1098 6.0224 -1.4020 14 6 9.2795 6.8856 -0.9006 15 1 9.6327 7.6124 -1.6321 16 7 10.3666 6.1089 -0.2997 17 6 11.5527 5.9607 -0.9679 18 1 11.6865 6.4161 -1.9380 19 6 12.5807 5.2199 -0.4011 20 7 12.4175 4.6644 0.7808 21 14 14.1959 5.0112 -1.3161 22 1 14.1254 5.7280 -2.6148 23 1 15.3029 5.5719 -0.5003 24 1 14.4433 3.5676 -1.5608 25 6 8.3007 7.4742 0.1293 26 6 1.9088 3.6034 0.0070 27 17 0.9605 5.0575 0.0149 28 6 1.2865 2.3728 0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0196 0.3722 0.0002 33 1 5.1423 2.5566 0.0011 34 1 5.8498 4.2471 0.0024 35 1 5.6960 6.9220 0.8951 36 1 5.6960 6.9242 -0.8848 37 1 7.5174 6.5006 -2.1822 38 1 8.3969 5.0014 -1.6531 39 1 10.2463 5.6995 0.5714 40 1 13.1360 4.1471 1.1770 41 1 8.7420 7.6250 1.1145 42 1 7.7606 8.3492 -0.2322 43 1 0.2081 2.3137 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086506278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:43 Heat of formation + Delta-G solvation = -13.977829 kcal Electronic energy + Delta-G solvation = -25732.123808 eV Core-core repulsion = 21804.909879 eV Total energy + Delta-G solvation = -3927.213929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84497 -39.73062 -38.59675 -37.51378 -36.50188 -34.66598 -33.23673 -31.41704 -31.11654 -30.03588 -28.02603 -27.19920 -25.06153 -24.03133 -23.35911 -23.02579 -21.67808 -20.65135 -18.98152 -18.46685 -17.76000 -17.26965 -16.86256 -16.32443 -15.77801 -15.50355 -15.37223 -14.95943 -14.69875 -14.37154 -14.22559 -14.09016 -13.72413 -13.61984 -13.06275 -13.01736 -12.88768 -12.56340 -12.29270 -12.19098 -11.92253 -11.60134 -11.41219 -11.30100 -11.18633 -11.04864 -10.86859 -10.48560 -10.15265 -10.00354 -9.70869 -9.63961 -9.42762 -9.36361 -9.03065 -8.90422 -8.66085 -7.01584 -5.82604 -3.11505 0.44397 0.70765 1.85143 2.63287 2.67954 3.13824 3.40304 3.45816 3.46487 3.48445 4.21418 4.37096 4.52642 4.54370 4.61205 4.64203 4.73672 4.96193 4.98357 5.05517 5.10177 5.10726 5.23185 5.44177 5.58219 5.59961 5.63418 5.72212 5.73270 5.87591 5.97159 6.01513 6.10891 6.21625 6.37099 6.42428 6.59043 6.73775 6.74526 6.89697 7.03579 7.49917 7.68157 8.20377 8.36690 9.47492 10.05071 10.39257 11.39895 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002183 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.839311 B =12825.185156 C =14323.336703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.164 3.836 4 C -0.155 4.155 5 C -0.033 4.033 6 C -0.167 4.167 7 C 0.553 3.447 8 O -0.524 6.524 9 N -0.720 5.720 10 C 0.133 3.867 11 C -0.120 4.120 12 H 0.093 0.907 13 C -0.168 4.168 14 C 0.167 3.833 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.148 4.148 26 C 0.055 3.945 27 Cl -0.027 7.027 28 C -0.216 4.216 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.400 0.600 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.085 -7.416 -0.824 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.220 6.220 3 C 0.117 3.883 4 C -0.173 4.173 5 C -0.052 4.052 6 C -0.171 4.171 7 C 0.340 3.660 8 O -0.401 6.401 9 N -0.372 5.372 10 C 0.010 3.990 11 C -0.139 4.139 12 H 0.111 0.889 13 C -0.209 4.209 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.187 4.187 26 C 0.027 3.973 27 Cl 0.003 6.997 28 C -0.236 4.236 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.372 -6.712 -0.935 27.229 hybrid contribution 0.715 -0.624 -0.116 0.956 sum -25.657 -7.336 -1.051 26.706 Atomic orbital electron populations 1.23189 0.77674 1.04547 1.01869 1.86085 1.22020 1.26212 1.87710 1.19104 0.92234 0.83903 0.93040 1.20484 0.91240 0.99110 1.06507 1.21170 1.00238 0.90223 0.93545 1.19754 0.92206 0.94548 1.10586 1.17940 0.82435 0.88329 0.77330 1.90860 1.64291 1.35798 1.49122 1.45976 1.05863 1.10370 1.74943 1.21487 0.91832 0.83788 1.01880 1.22717 0.91341 1.00012 0.99807 0.88907 1.23886 1.00148 1.02371 0.94514 1.21060 0.87179 0.92552 0.93753 0.91969 1.42179 1.10792 1.60068 1.21399 1.19341 0.90487 1.26634 1.00755 0.90935 1.24763 0.98600 1.00552 0.97026 1.69664 1.32986 1.38893 1.16516 0.86104 0.83806 0.77395 0.78803 1.20494 1.21838 1.21850 1.23442 0.98185 0.95655 1.01444 1.20705 0.90873 0.88602 0.97159 1.98427 1.70665 1.34778 1.95820 1.21064 1.00965 0.90350 1.11196 0.87699 0.92152 0.92158 0.83704 0.83680 0.76509 0.91684 0.91425 0.91372 0.91521 0.78122 0.93493 0.91324 0.90440 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.42 10.48 -18.85 -0.20 -2.61 16 3 C 0.16 1.44 6.69 -39.03 -0.26 1.17 16 4 C -0.15 -1.31 9.97 -39.49 -0.39 -1.70 16 5 C -0.03 -0.30 9.53 -39.22 -0.37 -0.67 16 6 C -0.17 -1.92 5.88 -104.93 -0.62 -2.53 16 7 C 0.55 7.51 7.76 -12.47 -0.10 7.41 16 8 O -0.52 -8.59 13.96 5.29 0.07 -8.52 16 9 N -0.72 -8.78 5.51 -61.35 -0.34 -9.12 16 10 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 11 C -0.12 -1.74 3.63 -89.81 -0.33 -2.07 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 13 C -0.17 -2.72 7.43 -25.92 -0.19 -2.92 16 14 C 0.17 3.19 4.56 -67.12 -0.31 2.88 16 15 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 16 N -0.71 -17.07 5.31 -52.64 -0.28 -17.35 16 17 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 26 C 0.05 0.62 6.35 -39.10 -0.25 0.37 16 27 Cl -0.03 -0.32 26.01 -51.86 -1.35 -1.67 16 28 C -0.22 -1.93 8.80 -39.46 -0.35 -2.28 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 31 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.15 1.02 6.39 -52.49 -0.34 0.69 16 34 H 0.40 4.12 6.49 -40.82 -0.27 3.85 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.38 9.83 7.90 -40.82 -0.32 9.51 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.14 0.96 6.27 -52.49 -0.33 0.63 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -32.39 373.18 -9.18 -41.58 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.79 Total: 9.07 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.63 Total: -7.18 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.11 Total: -53.25 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.12 Total: -11.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.35 Total: -1.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.39 -9.18 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.601 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds