Wall clock time and date at job start Tue Mar 31 2020 21:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35716 * 116.99893 * 2 1 4 4 C 1.39061 * 119.89707 * 179.97438 * 3 2 1 5 5 C 1.37645 * 120.12287 * 180.02562 * 4 3 2 6 6 C 1.39785 * 119.92391 * 0.02562 * 5 4 3 7 7 C 1.47530 * 120.10094 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00322 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99551 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99616 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47083 * 179.97438 * 10 9 7 12 12 H 1.08999 * 112.85291 * 316.19669 * 11 10 9 13 13 C 1.53779 * 113.69159 * 87.46292 * 11 10 9 14 14 C 1.53774 * 87.08337 * 139.99144 * 13 11 10 15 15 H 1.08997 * 113.69714 * 220.01164 * 14 13 11 16 16 N 1.46504 * 113.61455 * 89.11402 * 14 13 11 17 17 C 1.36943 * 119.99781 * 107.50577 * 16 14 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 14 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.53783 * 113.61385 * 184.99818 * 11 10 9 26 26 C 1.39851 * 119.79931 * 0.25222 * 6 5 4 27 27 Cl 1.73604 * 120.05979 * 179.72296 * 26 6 5 28 28 C 1.37896 * 119.87831 * 359.49550 * 26 6 5 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47294 * 299.99790 * 1 2 3 31 31 H 1.09004 * 109.47071 * 59.99611 * 1 2 3 32 32 H 1.07994 * 119.94402 * 0.04857 * 4 3 2 33 33 H 1.07997 * 120.04242 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00466 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47509 * 59.99697 * 10 9 7 36 36 H 1.08997 * 109.46881 * 299.99496 * 10 9 7 37 37 H 1.09004 * 113.61687 * 25.44235 * 13 11 10 38 38 H 1.08995 * 113.61898 * 254.54275 * 13 11 10 39 39 H 0.97000 * 120.00410 * 287.50903 * 16 14 13 40 40 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 41 41 H 1.09004 * 113.61197 * 105.38597 * 25 11 10 42 42 H 1.08995 * 113.61664 * 334.48227 * 25 11 10 43 43 H 1.07998 * 119.96587 * 180.25056 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4339 1.2796 0.0005 5 6 4.0636 2.5035 0.0011 6 6 3.3053 3.6778 0.0016 7 6 3.9762 4.9918 0.0028 8 8 3.3149 6.0121 0.0028 9 7 5.3222 5.0611 0.0028 10 6 5.9884 6.3659 0.0045 11 6 7.5050 6.1641 0.0047 12 1 7.8288 5.3889 0.6992 13 6 8.1098 6.0224 -1.4020 14 6 9.2795 6.8856 -0.9006 15 1 9.6327 7.6124 -1.6321 16 7 10.3666 6.1089 -0.2997 17 6 11.5527 5.9607 -0.9679 18 1 11.6865 6.4161 -1.9380 19 6 12.5807 5.2199 -0.4011 20 7 12.4175 4.6644 0.7808 21 14 14.1959 5.0112 -1.3161 22 1 14.1254 5.7280 -2.6148 23 1 15.3029 5.5719 -0.5003 24 1 14.4433 3.5676 -1.5608 25 6 8.3007 7.4742 0.1293 26 6 1.9088 3.6034 0.0070 27 17 0.9605 5.0575 0.0149 28 6 1.2865 2.3728 0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0196 0.3722 0.0002 33 1 5.1423 2.5566 0.0011 34 1 5.8498 4.2471 0.0024 35 1 5.6960 6.9220 0.8951 36 1 5.6960 6.9242 -0.8848 37 1 7.5174 6.5006 -2.1822 38 1 8.3969 5.0014 -1.6531 39 1 10.2463 5.6995 0.5714 40 1 13.1360 4.1471 1.1770 41 1 8.7420 7.6250 1.1145 42 1 7.7606 8.3492 -0.2322 43 1 0.2081 2.3137 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086506278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:42 Heat of formation + Delta-G solvation = -34.570038 kcal Electronic energy + Delta-G solvation = -25733.016753 eV Core-core repulsion = 21804.909879 eV Total energy + Delta-G solvation = -3928.106874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.59122 -40.67682 -39.85417 -38.32036 -37.31449 -35.98689 -34.95320 -32.33987 -32.03536 -31.53984 -28.75007 -28.18535 -26.40781 -25.74816 -24.42558 -23.74563 -22.94474 -21.60643 -19.97066 -19.53751 -19.28273 -18.55580 -17.69763 -16.85112 -16.78837 -16.61953 -16.38714 -16.23906 -15.83533 -15.74095 -15.34643 -14.90138 -14.83399 -14.72306 -14.56761 -14.08318 -13.87994 -13.65326 -13.25731 -13.03773 -12.93150 -12.89249 -12.84673 -12.62761 -12.26311 -12.13751 -12.11063 -12.02435 -11.85808 -11.48186 -11.43972 -10.94198 -10.84037 -10.56592 -10.08568 -10.06774 -9.39968 -8.97741 -7.93966 -5.21804 -0.33662 0.01354 1.03935 1.49204 1.49656 1.59535 1.77112 2.13678 2.19678 2.57015 2.62254 3.38838 3.55580 3.64193 3.75438 3.76545 3.82313 3.92591 4.03155 4.17536 4.25438 4.35213 4.35645 4.36768 4.43954 4.46769 4.70724 4.76220 4.79567 4.92005 4.96052 4.96504 5.02739 5.04382 5.14439 5.30001 5.35807 5.38543 5.51187 5.57783 5.69013 6.17775 6.30114 6.53273 7.21047 7.35208 8.12518 8.34884 9.29441 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002183 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.839311 B =12825.185156 C =14323.336703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.167 3.833 4 C -0.156 4.156 5 C -0.028 4.028 6 C -0.188 4.188 7 C 0.551 3.449 8 O -0.557 6.557 9 N -0.714 5.714 10 C 0.143 3.857 11 C -0.102 4.102 12 H 0.083 0.917 13 C -0.153 4.153 14 C 0.143 3.857 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.971 3.029 22 H -0.267 1.267 23 H -0.295 1.295 24 H -0.293 1.293 25 C -0.135 4.135 26 C 0.040 3.960 27 Cl -0.044 7.044 28 C -0.213 4.213 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.130 -8.302 -1.645 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.120 3.880 4 C -0.175 4.175 5 C -0.046 4.046 6 C -0.192 4.192 7 C 0.339 3.661 8 O -0.437 6.437 9 N -0.366 5.366 10 C 0.020 3.980 11 C -0.120 4.120 12 H 0.102 0.898 13 C -0.193 4.193 14 C 0.033 3.967 15 H 0.077 0.923 16 N -0.357 5.357 17 C -0.372 4.372 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.223 1.223 24 H -0.221 1.221 25 C -0.174 4.174 26 C 0.012 3.988 27 Cl -0.014 7.014 28 C -0.233 4.233 29 H 0.144 0.856 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -27.448 -7.592 -1.792 28.535 hybrid contribution 0.931 -0.397 0.110 1.018 sum -26.517 -7.989 -1.682 27.745 Atomic orbital electron populations 1.23506 0.75810 1.06295 1.02710 1.86089 1.23982 1.25603 1.87268 1.19246 0.92526 0.84204 0.92048 1.20758 0.91519 0.99540 1.05674 1.21341 1.00999 0.89628 0.92680 1.19706 0.92493 0.94211 1.12787 1.18262 0.82488 0.88795 0.76527 1.90837 1.64964 1.37065 1.50854 1.45891 1.05726 1.10453 1.74514 1.21298 0.90559 0.84311 1.01877 1.22496 0.92158 0.99023 0.98366 0.89842 1.23704 0.98747 1.00852 0.95999 1.21387 0.87170 0.93053 0.95073 0.92321 1.42301 1.11440 1.60880 1.21111 1.19701 0.91456 1.25300 1.00708 0.90609 1.25524 1.01880 1.01294 0.98057 1.69806 1.33716 1.40285 1.18086 0.85107 0.79817 0.77009 0.78035 1.19130 1.22259 1.22069 1.23348 0.97140 0.97087 0.99840 1.20877 0.90863 0.88715 0.98312 1.98414 1.71006 1.35983 1.96017 1.21224 1.02038 0.89558 1.10443 0.85638 0.91305 0.91305 0.81832 0.81960 0.75389 0.91819 0.91343 0.89158 0.93127 0.79304 0.94042 0.92390 0.87753 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.24 10.48 -90.38 -0.95 -5.19 16 3 C 0.17 2.59 6.69 22.63 0.15 2.75 16 4 C -0.16 -2.32 9.97 22.33 0.22 -2.10 16 5 C -0.03 -0.46 9.53 22.50 0.21 -0.24 16 6 C -0.19 -4.16 5.88 -20.06 -0.12 -4.28 16 7 C 0.55 14.61 7.76 86.69 0.67 15.28 16 8 O -0.56 -18.21 13.96 -3.99 -0.06 -18.26 16 9 N -0.71 -16.56 5.51 -466.28 -2.57 -19.13 16 10 C 0.14 3.55 5.51 86.38 0.48 4.03 16 11 C -0.10 -2.81 3.63 -10.27 -0.04 -2.85 16 12 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 13 C -0.15 -4.71 7.43 31.12 0.23 -4.48 16 14 C 0.14 5.36 4.56 45.52 0.21 5.56 16 15 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 16 N -0.72 -34.93 5.31 -320.44 -1.70 -36.64 16 17 C -0.24 -13.01 9.97 84.03 0.84 -12.17 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 21 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 C -0.13 -4.05 7.39 31.12 0.23 -3.82 16 26 C 0.04 0.88 6.35 22.58 0.14 1.02 16 27 Cl -0.04 -1.06 26.01 -2.72 -0.07 -1.13 16 28 C -0.21 -3.49 8.80 22.35 0.20 -3.29 16 29 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 31 H 0.07 0.32 7.65 -2.38 -0.02 0.30 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.16 1.98 6.39 -2.91 -0.02 1.96 16 34 H 0.41 7.84 6.49 -92.71 -0.60 7.24 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.74 7.85 -2.39 -0.02 1.72 16 37 H 0.09 2.42 7.90 -2.38 -0.02 2.40 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.37 19.46 7.90 -92.71 -0.73 18.73 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.10 2.59 8.10 -2.39 -0.02 2.58 16 43 H 0.16 1.89 6.27 -2.91 -0.02 1.87 16 Total: -1.00 -69.97 373.18 1.70 -68.28 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.28 Total: 29.50 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.01 Total: -7.18 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -3.99 Total: -113.44 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.00 Total: -23.45 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -69.97 1.70 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086506278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.708 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds