Wall clock time and date at job start Tue Mar 31 2020 21:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35650 * 116.99896 * 2 1 4 4 C 1.38673 * 120.14529 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.12095 * 179.97438 * 4 3 2 6 6 C 1.38479 * 120.41326 * 359.97438 * 5 4 3 7 7 C 1.37961 * 120.28727 * 359.76714 * 6 5 4 8 8 Cl 1.73605 * 120.06974 * 180.28111 * 7 6 5 9 9 C 1.39840 * 119.86978 * 0.50623 * 7 6 5 10 10 C 1.47462 * 120.20325 * 179.74299 * 9 7 6 11 11 O 1.21604 * 120.00099 * 269.72994 * 10 9 7 12 12 N 1.34781 * 119.99799 * 89.73174 * 10 9 7 13 13 C 1.46504 * 119.99821 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46766 * 179.97438 * 13 12 10 15 15 H 1.08995 * 112.85412 * 43.80511 * 14 13 12 16 16 C 1.53785 * 113.61100 * 175.00257 * 14 13 12 17 17 C 1.53781 * 87.08277 * 140.06519 * 16 14 13 18 18 H 1.09002 * 113.61228 * 220.01683 * 17 16 14 19 19 N 1.46500 * 113.61711 * 89.19510 * 17 16 14 20 20 C 1.36940 * 119.99935 * 156.52601 * 19 17 16 21 21 H 1.08002 * 119.99799 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99860 * 180.02562 * 20 19 17 23 23 N 1.31618 * 120.00306 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99928 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47061 * 90.00016 * 24 22 20 26 26 H 1.48495 * 109.47000 * 210.00192 * 24 22 20 27 27 H 1.48499 * 109.46870 * 329.99849 * 24 22 20 28 28 C 1.53776 * 113.69177 * 272.53131 * 14 13 12 29 29 H 1.08998 * 109.47084 * 60.00248 * 1 2 3 30 30 H 1.09001 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47215 * 299.99541 * 1 2 3 32 32 H 1.08001 * 119.93856 * 359.95448 * 4 3 2 33 33 H 1.07999 * 119.79259 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.86041 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99974 * 359.97438 * 12 10 9 36 36 H 1.08993 * 109.47068 * 59.99946 * 13 12 10 37 37 H 1.08997 * 109.46834 * 299.99809 * 13 12 10 38 38 H 1.08993 * 113.61827 * 25.50878 * 16 14 13 39 39 H 1.09006 * 113.60734 * 254.60906 * 16 14 13 40 40 H 0.96998 * 119.99853 * 336.53388 * 19 17 16 41 41 H 0.96998 * 120.00051 * 179.97438 * 23 22 20 42 42 H 1.09003 * 113.61687 * 105.46026 * 28 14 13 43 43 H 1.09009 * 113.61565 * 334.56374 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3736 0.0005 5 6 1.9199 3.6037 0.0011 6 6 3.3023 3.6856 0.0016 7 6 4.0673 2.5375 0.0065 8 17 5.7999 2.6468 0.0145 9 6 3.4444 1.2855 0.0001 10 6 4.2550 0.0537 -0.0005 11 8 4.5892 -0.4538 -1.0538 12 7 4.6254 -0.5099 1.1665 13 6 5.4311 -1.7334 1.1659 14 6 5.7118 -2.1598 2.6082 15 1 4.8330 -2.0895 3.2491 16 6 6.4501 -3.5041 2.7205 17 6 7.2659 -2.8714 3.8602 18 1 8.3219 -3.1413 3.8434 19 7 6.6567 -3.0399 5.1818 20 6 7.4349 -2.9811 6.3071 21 1 8.4977 -2.8100 6.2202 22 6 6.8577 -3.1413 7.5592 23 7 5.5625 -3.3502 7.6651 24 14 7.9191 -3.0604 9.0943 25 1 7.9838 -1.6578 9.5779 26 1 7.3287 -3.9214 10.1503 27 1 9.2886 -3.5376 8.7748 28 6 6.9678 -1.5093 3.2116 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2139 2.3186 0.0002 33 1 1.3288 4.5076 0.0011 34 1 3.7837 4.6524 0.0024 35 1 4.3590 -0.1049 2.0068 36 1 6.3743 -1.5470 0.6525 37 1 4.8878 -2.5260 0.6515 38 1 7.0457 -3.7500 1.8414 39 1 5.8124 -4.3267 3.0446 40 1 5.7021 -3.1933 5.2598 41 1 5.1592 -3.4626 8.5401 42 1 6.7482 -0.7213 3.9320 43 1 7.7051 -1.2096 2.4667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086558288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:56 Heat of formation + Delta-G solvation = -21.522447 kcal Electronic energy + Delta-G solvation = -26316.550866 eV Core-core repulsion = 22389.009779 eV Total energy + Delta-G solvation = -3927.541088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90155 -39.37221 -38.43364 -37.87397 -36.58933 -34.56260 -33.18587 -31.82190 -30.52708 -30.09017 -27.87532 -27.27753 -25.02407 -24.30010 -23.46919 -22.62473 -21.66141 -20.73313 -18.89777 -18.31044 -17.60932 -17.15684 -16.94590 -16.36371 -15.88181 -15.68150 -15.31281 -15.04489 -14.80369 -14.37436 -14.11378 -13.94582 -13.66063 -13.54209 -13.06024 -12.88331 -12.80135 -12.33114 -12.21939 -12.16788 -11.87721 -11.77236 -11.33559 -11.30170 -11.28845 -11.02817 -10.83230 -10.47043 -10.20567 -10.13600 -9.77546 -9.67620 -9.43979 -9.25984 -8.93571 -8.85775 -8.72759 -6.98794 -5.80049 -3.08827 0.53297 0.82075 1.66018 2.56820 2.84566 3.01064 3.26625 3.42250 3.47647 3.49174 4.26758 4.46504 4.56477 4.60262 4.65205 4.76171 4.82093 4.83755 5.07043 5.10739 5.12754 5.18782 5.28362 5.46893 5.62343 5.63961 5.67853 5.75483 5.82291 5.90684 6.00927 6.01299 6.14708 6.25388 6.40462 6.46662 6.62922 6.78399 6.82910 6.93761 7.07866 7.53596 7.69918 8.21071 8.39299 9.49928 10.07880 10.42187 11.42462 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002545 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.895623 B =11001.458688 C =11229.102143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.174 3.826 4 C -0.208 4.208 5 C -0.052 4.052 6 C -0.151 4.151 7 C 0.031 3.969 8 Cl -0.043 7.043 9 C -0.154 4.154 10 C 0.573 3.427 11 O -0.530 6.530 12 N -0.709 5.709 13 C 0.132 3.868 14 C -0.119 4.119 15 H 0.093 0.907 16 C -0.147 4.147 17 C 0.167 3.833 18 H 0.061 0.939 19 N -0.706 5.706 20 C -0.241 4.241 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.168 4.168 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 14.048 -18.060 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.127 3.873 4 C -0.227 4.227 5 C -0.070 4.070 6 C -0.170 4.170 7 C 0.004 3.996 8 Cl -0.013 7.013 9 C -0.158 4.158 10 C 0.358 3.642 11 O -0.407 6.407 12 N -0.359 5.359 13 C 0.009 3.991 14 C -0.138 4.138 15 H 0.111 0.889 16 C -0.186 4.186 17 C 0.055 3.945 18 H 0.079 0.921 19 N -0.345 5.345 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.209 4.209 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.440 13.432 -18.641 25.237 hybrid contribution -0.176 0.474 1.301 1.396 sum -10.617 13.906 -17.340 24.633 Atomic orbital electron populations 1.23195 0.77338 1.04792 1.01600 1.86121 1.22132 1.25854 1.87454 1.18736 0.90048 0.85178 0.93351 1.21303 1.00695 0.91829 1.08874 1.21014 0.93692 0.97535 0.94785 1.20927 0.93665 0.97409 1.04957 1.20645 0.85899 0.92793 1.00297 1.98425 1.08180 1.98343 1.96375 1.19030 0.91284 0.93625 1.11888 1.17680 0.79152 0.83019 0.84388 1.90797 1.55449 1.63173 1.31238 1.45995 1.53918 1.27965 1.08062 1.21512 0.94726 0.85214 0.97644 1.22703 0.98800 0.98503 0.93748 0.88897 1.23423 0.99477 0.95854 0.99864 1.21055 0.95761 0.92391 0.85297 0.92070 1.42171 1.08074 1.84900 0.99331 1.19291 0.91655 1.41424 0.84812 0.91009 1.24754 0.95899 1.02638 0.97612 1.69660 1.09300 1.55995 1.23162 0.86174 0.79376 0.77410 0.83147 1.21697 1.21776 1.20698 1.23882 0.96170 1.01000 0.99844 0.92255 0.87597 0.92055 0.84193 0.84268 0.84075 0.76280 0.91442 0.91674 0.90421 0.91337 0.78118 0.93478 0.91508 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.41 9.94 -18.65 -0.19 -3.59 16 3 C 0.17 1.93 6.70 -38.70 -0.26 1.67 16 4 C -0.21 -1.63 9.03 -39.47 -0.36 -1.99 16 5 C -0.05 -0.36 10.03 -39.55 -0.40 -0.75 16 6 C -0.15 -1.27 9.81 -39.59 -0.39 -1.66 16 7 C 0.03 0.36 6.35 -39.08 -0.25 0.11 16 8 Cl -0.04 -0.51 28.04 -51.86 -1.45 -1.96 16 9 C -0.15 -1.98 5.64 -104.82 -0.59 -2.57 16 10 C 0.57 8.77 5.84 -12.50 -0.07 8.69 16 11 O -0.53 -9.88 17.11 5.27 0.09 -9.79 16 12 N -0.71 -9.95 5.55 -61.37 -0.34 -10.29 16 13 C 0.13 1.90 5.51 -4.04 -0.02 1.88 16 14 C -0.12 -1.84 3.64 -89.81 -0.33 -2.17 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.15 -2.39 7.38 -25.92 -0.19 -2.59 16 17 C 0.17 3.30 4.55 -67.12 -0.31 2.99 16 18 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 19 N -0.71 -17.49 5.31 -52.64 -0.28 -17.77 16 20 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C -0.17 -2.87 7.43 -25.92 -0.19 -3.06 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.14 0.70 6.30 -52.49 -0.33 0.37 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.40 5.17 8.46 -40.82 -0.35 4.82 16 36 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.38 10.06 7.90 -40.82 -0.32 9.74 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.06 7.90 -51.92 -0.41 0.65 16 LS Contribution 379.99 15.07 5.73 5.73 Total: -1.00 -33.68 379.99 -9.31 -42.98 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.96 Total: 10.15 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.61 Total: -5.55 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.10 Total: -55.18 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.10 Total: -13.39 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.68 -9.31 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086558288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.462 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds