Wall clock time and date at job start Tue Mar 31 2020 21:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37092 * 119.99628 * 2 1 4 4 H 1.08002 * 119.99913 * 136.08634 * 3 2 1 5 5 C 1.38951 * 119.99898 * 316.07713 * 3 2 1 6 6 N 1.31415 * 119.99972 * 161.39740 * 5 3 2 7 7 Si 1.86799 * 120.00104 * 341.39842 * 5 3 2 8 8 H 1.48500 * 109.47110 * 87.94057 * 7 5 3 9 9 H 1.48498 * 109.46985 * 207.93936 * 7 5 3 10 10 H 1.48500 * 109.47008 * 327.93764 * 7 5 3 11 11 C 1.34777 * 120.00052 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99988 * 184.91146 * 11 2 1 13 13 C 1.50698 * 119.99861 * 4.91747 * 11 2 1 14 14 H 1.08995 * 109.47403 * 352.74950 * 13 11 2 15 15 C 1.50700 * 109.46955 * 112.74745 * 13 11 2 16 16 C 1.38241 * 120.00842 * 81.42939 * 15 13 11 17 17 C 1.38213 * 120.01595 * 179.97438 * 16 15 13 18 18 C 1.38263 * 120.02703 * 0.04624 * 17 16 15 19 19 C 1.38196 * 120.01376 * 359.97379 * 18 17 16 20 20 C 1.38331 * 120.00990 * 261.15458 * 15 13 11 21 21 Cl 1.73605 * 120.00948 * 359.97438 * 20 15 13 22 22 N 1.46903 * 109.47288 * 232.74653 * 13 11 2 23 23 C 1.47011 * 111.00294 * 183.63946 * 22 13 11 24 24 C 1.53094 * 109.25921 * 177.60719 * 23 22 13 25 25 O 1.43020 * 109.25912 * 56.84926 * 24 23 22 26 26 C 1.43021 * 113.73296 * 301.32905 * 25 24 23 27 27 C 1.47008 * 111.00019 * 60.00011 * 22 13 11 28 28 H 1.09003 * 109.47075 * 266.72083 * 1 2 3 29 29 H 1.08997 * 109.46789 * 26.72455 * 1 2 3 30 30 H 1.08999 * 109.46862 * 146.72584 * 1 2 3 31 31 H 0.96999 * 120.00023 * 180.02562 * 6 5 3 32 32 H 1.08000 * 119.98759 * 0.02562 * 16 15 13 33 33 H 1.08004 * 119.99158 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.99592 * 179.97438 * 18 17 16 35 35 H 1.07997 * 120.00731 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.50710 * 297.54441 * 23 22 13 37 37 H 1.08996 * 109.50862 * 57.66920 * 23 22 13 38 38 H 1.08998 * 109.50520 * 296.90924 * 24 23 22 39 39 H 1.09002 * 109.54228 * 176.80001 * 24 23 22 40 40 H 1.08999 * 109.50698 * 298.73170 * 26 25 24 41 41 H 1.09001 * 109.53967 * 178.62916 * 26 25 24 42 42 H 1.09002 * 109.50507 * 302.33391 * 27 22 13 43 43 H 1.09002 * 109.50667 * 62.41023 * 27 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0040 1.3181 0.6487 5 6 1.7471 2.2223 -0.8348 6 7 2.1417 3.4525 -0.5939 7 14 0.6440 1.8652 -2.2993 8 1 -0.7777 1.9272 -1.8750 9 1 0.8882 2.8746 -3.3607 10 1 0.9446 0.5098 -2.8266 11 6 2.1390 -1.1672 0.0005 12 8 3.3486 -1.1691 0.0905 13 6 1.3896 -2.4699 -0.1108 14 1 0.3181 -2.2789 -0.0523 15 6 1.7120 -3.1237 -1.4297 16 6 2.8772 -3.8537 -1.5730 17 6 3.1728 -4.4539 -2.7824 18 6 2.3039 -4.3238 -3.8500 19 6 1.1390 -3.5940 -3.7082 20 6 0.8394 -2.9984 -2.4957 21 17 -0.6278 -2.0883 -2.3143 22 7 1.7890 -3.3600 0.9876 23 6 1.1421 -4.6742 0.8626 24 6 1.6308 -5.5869 1.9903 25 8 1.3588 -4.9672 3.2502 26 6 1.9742 -3.6856 3.4061 27 6 1.4889 -2.7536 2.2927 28 1 -0.3633 -0.0588 1.0260 29 1 -0.3633 0.9179 -0.4621 30 1 -0.3633 -0.8592 -0.5638 31 1 1.8599 4.1750 -1.1764 32 1 3.5562 -3.9557 -0.7393 33 1 4.0830 -5.0245 -2.8938 34 1 2.5356 -4.7926 -4.7950 35 1 0.4602 -3.4928 -4.5420 36 1 0.0608 -4.5557 0.9330 37 1 1.3984 -5.1160 -0.1003 38 1 2.7039 -5.7487 1.8883 39 1 1.1117 -6.5438 1.9358 40 1 3.0573 -3.7921 3.3454 41 1 1.7035 -3.2667 4.3753 42 1 1.9985 -1.7935 2.3737 43 1 0.4133 -2.6036 2.3857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143857266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:54 Heat of formation + Delta-G solvation = -19.043452 kcal Electronic energy + Delta-G solvation = -29005.529162 eV Core-core repulsion = 25078.095571 eV Total energy + Delta-G solvation = -3927.433591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46058 -38.90029 -38.29940 -36.46621 -35.58781 -34.68894 -32.12649 -31.76414 -31.07509 -30.64107 -28.21188 -26.53096 -25.59660 -24.17442 -23.84271 -22.61075 -21.52387 -20.39909 -18.84929 -17.21558 -17.01109 -16.82102 -16.36142 -16.10185 -15.62287 -15.39392 -15.00724 -14.98817 -14.61681 -14.37316 -14.07075 -13.78575 -13.62182 -13.30717 -13.20658 -12.81107 -12.56143 -12.54404 -12.29952 -12.05740 -11.87688 -11.53946 -11.44142 -11.34458 -11.29843 -10.98668 -10.79014 -10.52899 -10.52165 -10.20840 -9.94078 -9.70296 -9.14325 -8.91560 -8.72832 -8.42466 -8.11105 -7.65065 -6.38488 -4.04066 1.16224 1.33060 2.15459 3.03505 3.21742 3.31963 3.40505 3.67630 3.84088 3.89809 4.17565 4.52299 4.74606 4.88570 4.92086 4.94696 4.99406 5.03922 5.15158 5.19607 5.27003 5.33424 5.40583 5.50959 5.58919 5.60405 5.67066 5.73474 5.80163 5.84921 5.95726 6.00256 6.02005 6.12522 6.22596 6.33957 6.42976 6.49161 6.85464 6.95514 6.99335 7.14472 7.57364 8.28896 8.50652 8.94355 9.29030 9.74412 10.72805 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.006253 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.752932 B = 4476.513828 C = 5919.251193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.466 5.466 3 C -0.316 4.316 4 H 0.103 0.897 5 C 0.065 3.935 6 N -0.866 5.866 7 Si 0.868 3.132 8 H -0.274 1.274 9 H -0.288 1.288 10 H -0.253 1.253 11 C 0.483 3.517 12 O -0.538 6.538 13 C 0.097 3.903 14 H 0.071 0.929 15 C -0.058 4.058 16 C -0.065 4.065 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.030 4.030 21 Cl -0.066 7.066 22 N -0.510 5.510 23 C 0.013 3.987 24 C 0.068 3.932 25 O -0.388 6.388 26 C 0.068 3.932 27 C 0.017 3.983 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.274 0.726 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -17.984 -1.846 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.189 5.189 3 C -0.443 4.443 4 H 0.121 0.879 5 C -0.141 4.141 6 N -0.502 5.502 7 Si 0.695 3.305 8 H -0.201 1.201 9 H -0.214 1.214 10 H -0.177 1.177 11 C 0.269 3.731 12 O -0.417 6.417 13 C -0.014 4.014 14 H 0.089 0.911 15 C -0.059 4.059 16 C -0.083 4.083 17 C -0.140 4.140 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.057 4.057 21 Cl -0.037 7.037 22 N -0.236 5.236 23 C -0.115 4.115 24 C -0.010 4.010 25 O -0.307 6.307 26 C -0.008 4.008 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.163 0.837 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.209 -17.812 -1.705 18.382 hybrid contribution -1.653 0.609 -1.148 2.102 sum -5.861 -17.203 -2.853 18.397 Atomic orbital electron populations 1.22458 0.83830 1.02638 1.00983 1.43588 1.03824 1.05332 1.66164 1.18967 1.14939 0.87077 1.23282 0.87904 1.25403 0.96931 0.94829 0.96951 1.69722 1.44375 0.99017 1.37107 0.87106 0.80068 0.79872 0.83467 1.20135 1.21443 1.17673 1.19753 0.87886 0.83605 0.81864 1.90556 1.13602 1.86278 1.51225 1.20853 0.99212 0.92772 0.88601 0.91133 1.19265 0.94761 0.98448 0.93449 1.21123 0.94958 0.94154 0.98104 1.21282 0.99604 1.00172 0.92968 1.21082 0.93807 0.98781 0.99121 1.20931 0.98420 0.98519 0.95612 1.20871 0.89939 0.99039 0.95866 1.98340 1.35364 1.73040 1.96916 1.62001 1.58113 1.02264 1.01244 1.22880 0.97196 0.90877 1.00533 1.22617 1.00673 0.95121 0.82544 1.87949 1.74205 1.32979 1.35566 1.22643 0.97698 0.82651 0.97851 1.22811 0.99802 0.99588 0.88877 0.93546 0.91206 0.91858 0.91611 0.83716 0.85363 0.85304 0.85085 0.94044 0.89402 0.92184 0.88693 0.91940 0.88371 0.88714 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 8.68 59.85 0.52 1.44 16 2 N -0.47 -11.42 2.46 -122.19 -0.30 -11.72 16 3 C -0.32 -9.00 9.28 -14.94 -0.14 -9.14 16 4 H 0.10 3.27 7.99 -52.49 -0.42 2.85 16 5 C 0.06 1.83 5.31 -17.47 -0.09 1.74 16 6 N -0.87 -25.39 13.96 55.50 0.77 -24.62 16 7 Si 0.87 21.08 25.38 -169.99 -4.32 16.77 16 8 H -0.27 -6.22 6.43 56.52 0.36 -5.86 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 11 C 0.48 11.24 5.03 -10.99 -0.06 11.19 16 12 O -0.54 -14.38 16.85 5.55 0.09 -14.29 16 13 C 0.10 1.77 1.49 -70.02 -0.10 1.66 16 14 H 0.07 1.25 4.45 -51.93 -0.23 1.02 16 15 C -0.06 -0.98 3.77 -104.59 -0.39 -1.37 16 16 C -0.06 -1.00 7.93 -39.59 -0.31 -1.31 16 17 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 18 C -0.11 -1.28 10.05 -39.59 -0.40 -1.68 16 19 C -0.12 -1.55 9.83 -39.55 -0.39 -1.94 16 20 C -0.03 -0.48 6.31 -39.50 -0.25 -0.73 16 21 Cl -0.07 -1.05 24.48 -51.86 -1.27 -2.32 16 22 N -0.51 -8.17 3.84 -229.13 -0.88 -9.05 16 23 C 0.01 0.17 5.22 -3.72 -0.02 0.15 16 24 C 0.07 0.77 7.01 37.21 0.26 1.03 16 25 O -0.39 -5.18 10.83 -35.23 -0.38 -5.56 16 26 C 0.07 0.90 7.01 37.20 0.26 1.16 16 27 C 0.02 0.27 5.41 -3.72 -0.02 0.25 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.53 3.84 -51.93 -0.20 1.34 16 30 H 0.06 1.19 2.73 -51.93 -0.14 1.04 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.15 2.30 7.67 -52.49 -0.40 1.90 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.08 6.02 -51.93 -0.31 0.76 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.72 7.01 -51.93 -0.36 1.36 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -32.71 350.00 -8.01 -40.71 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.47 Total: 4.27 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.53 Total: 0.53 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.40 Total: -45.38 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.29 Total: -19.85 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.32 Total: 16.77 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.27 Total: -2.32 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.71 -8.01 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143857266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.670 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds