Wall clock time and date at job start Tue Mar 31 2020 21:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37092 * 119.99628 * 2 1 4 4 H 1.08002 * 119.99913 * 136.08634 * 3 2 1 5 5 C 1.38951 * 119.99898 * 316.07713 * 3 2 1 6 6 N 1.31415 * 119.99972 * 161.39740 * 5 3 2 7 7 Si 1.86799 * 120.00104 * 341.39842 * 5 3 2 8 8 H 1.48500 * 109.47110 * 87.94057 * 7 5 3 9 9 H 1.48498 * 109.46985 * 207.93936 * 7 5 3 10 10 H 1.48500 * 109.47008 * 327.93764 * 7 5 3 11 11 C 1.34777 * 120.00052 * 179.97438 * 2 1 3 12 12 O 1.21293 * 119.99988 * 184.91146 * 11 2 1 13 13 C 1.50698 * 119.99861 * 4.91747 * 11 2 1 14 14 H 1.08995 * 109.47403 * 352.74950 * 13 11 2 15 15 C 1.50700 * 109.46955 * 112.74745 * 13 11 2 16 16 C 1.38241 * 120.00842 * 81.42939 * 15 13 11 17 17 C 1.38213 * 120.01595 * 179.97438 * 16 15 13 18 18 C 1.38263 * 120.02703 * 0.04624 * 17 16 15 19 19 C 1.38196 * 120.01376 * 359.97379 * 18 17 16 20 20 C 1.38331 * 120.00990 * 261.15458 * 15 13 11 21 21 Cl 1.73605 * 120.00948 * 359.97438 * 20 15 13 22 22 N 1.46903 * 109.47288 * 232.74653 * 13 11 2 23 23 C 1.47011 * 111.00294 * 183.63946 * 22 13 11 24 24 C 1.53094 * 109.25921 * 177.60719 * 23 22 13 25 25 O 1.43020 * 109.25912 * 56.84926 * 24 23 22 26 26 C 1.43021 * 113.73296 * 301.32905 * 25 24 23 27 27 C 1.47008 * 111.00019 * 60.00011 * 22 13 11 28 28 H 1.09003 * 109.47075 * 266.72083 * 1 2 3 29 29 H 1.08997 * 109.46789 * 26.72455 * 1 2 3 30 30 H 1.08999 * 109.46862 * 146.72584 * 1 2 3 31 31 H 0.96999 * 120.00023 * 180.02562 * 6 5 3 32 32 H 1.08000 * 119.98759 * 0.02562 * 16 15 13 33 33 H 1.08004 * 119.99158 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.99592 * 179.97438 * 18 17 16 35 35 H 1.07997 * 120.00731 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.50710 * 297.54441 * 23 22 13 37 37 H 1.08996 * 109.50862 * 57.66920 * 23 22 13 38 38 H 1.08998 * 109.50520 * 296.90924 * 24 23 22 39 39 H 1.09002 * 109.54228 * 176.80001 * 24 23 22 40 40 H 1.08999 * 109.50698 * 298.73170 * 26 25 24 41 41 H 1.09001 * 109.53967 * 178.62916 * 26 25 24 42 42 H 1.09002 * 109.50507 * 302.33391 * 27 22 13 43 43 H 1.09002 * 109.50667 * 62.41023 * 27 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0040 1.3181 0.6487 5 6 1.7471 2.2223 -0.8348 6 7 2.1417 3.4525 -0.5939 7 14 0.6440 1.8652 -2.2993 8 1 -0.7777 1.9272 -1.8750 9 1 0.8882 2.8746 -3.3607 10 1 0.9446 0.5098 -2.8266 11 6 2.1390 -1.1672 0.0005 12 8 3.3486 -1.1691 0.0905 13 6 1.3896 -2.4699 -0.1108 14 1 0.3181 -2.2789 -0.0523 15 6 1.7120 -3.1237 -1.4297 16 6 2.8772 -3.8537 -1.5730 17 6 3.1728 -4.4539 -2.7824 18 6 2.3039 -4.3238 -3.8500 19 6 1.1390 -3.5940 -3.7082 20 6 0.8394 -2.9984 -2.4957 21 17 -0.6278 -2.0883 -2.3143 22 7 1.7890 -3.3600 0.9876 23 6 1.1421 -4.6742 0.8626 24 6 1.6308 -5.5869 1.9903 25 8 1.3588 -4.9672 3.2502 26 6 1.9742 -3.6856 3.4061 27 6 1.4889 -2.7536 2.2927 28 1 -0.3633 -0.0588 1.0260 29 1 -0.3633 0.9179 -0.4621 30 1 -0.3633 -0.8592 -0.5638 31 1 1.8599 4.1750 -1.1764 32 1 3.5562 -3.9557 -0.7393 33 1 4.0830 -5.0245 -2.8938 34 1 2.5356 -4.7926 -4.7950 35 1 0.4602 -3.4928 -4.5420 36 1 0.0608 -4.5557 0.9330 37 1 1.3984 -5.1160 -0.1003 38 1 2.7039 -5.7487 1.8883 39 1 1.1117 -6.5438 1.9358 40 1 3.0573 -3.7921 3.3454 41 1 1.7035 -3.2667 4.3753 42 1 1.9985 -1.7935 2.3737 43 1 0.4133 -2.6036 2.3857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143857266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:53 Heat of formation + Delta-G solvation = -41.861673 kcal Electronic energy + Delta-G solvation = -29006.518634 eV Core-core repulsion = 25078.095571 eV Total energy + Delta-G solvation = -3928.423063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81481 -39.98140 -39.87871 -37.64700 -36.96146 -36.53455 -34.19417 -32.96862 -32.16239 -31.69056 -29.52800 -28.30451 -27.22549 -25.57479 -25.06908 -23.68698 -22.76594 -21.58662 -20.51307 -19.14491 -18.38054 -18.23267 -17.74331 -17.48061 -17.07275 -16.62271 -16.17222 -16.07857 -15.94673 -15.80448 -15.48996 -15.09143 -14.89078 -14.72840 -14.57902 -14.41836 -14.27177 -14.18830 -13.77248 -13.42864 -13.33212 -12.86656 -12.69837 -12.57418 -12.44758 -12.35799 -12.32137 -12.12784 -11.93658 -11.61975 -11.55780 -11.10610 -10.82612 -10.56421 -9.84434 -9.68697 -9.66037 -9.46702 -8.56299 -6.26838 0.07044 0.26799 0.99148 1.11510 1.24368 1.38839 1.76920 2.12476 2.33380 2.58989 2.81685 2.87738 2.98603 3.47151 3.74607 3.84336 3.84631 3.91580 4.00230 4.07891 4.17254 4.18792 4.25175 4.30609 4.38526 4.45070 4.46600 4.53932 4.63946 4.65892 4.67841 4.74867 4.83730 4.95747 4.97728 5.21227 5.36248 5.44668 5.46978 5.70096 5.84018 5.86368 5.99587 6.12148 6.51902 6.86847 7.19542 7.78140 8.59817 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010470 B = 0.006253 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.752932 B = 4476.513828 C = 5919.251193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.479 5.479 3 C -0.330 4.330 4 H 0.047 0.953 5 C 0.022 3.978 6 N -0.909 5.909 7 Si 0.929 3.071 8 H -0.243 1.243 9 H -0.285 1.285 10 H -0.250 1.250 11 C 0.484 3.516 12 O -0.584 6.584 13 C 0.114 3.886 14 H 0.074 0.926 15 C -0.087 4.087 16 C -0.080 4.080 17 C -0.115 4.115 18 C -0.095 4.095 19 C -0.117 4.117 20 C -0.048 4.048 21 Cl -0.074 7.074 22 N -0.520 5.520 23 C 0.018 3.982 24 C 0.067 3.933 25 O -0.394 6.394 26 C 0.076 3.924 27 C 0.017 3.983 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.280 0.720 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.127 0.873 40 H 0.058 0.942 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.785 -21.137 -4.073 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.202 5.202 3 C -0.458 4.458 4 H 0.065 0.935 5 C -0.181 4.181 6 N -0.546 5.546 7 Si 0.752 3.248 8 H -0.168 1.168 9 H -0.211 1.211 10 H -0.174 1.174 11 C 0.272 3.728 12 O -0.465 6.465 13 C 0.003 3.997 14 H 0.091 0.909 15 C -0.088 4.088 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.113 4.113 19 C -0.135 4.135 20 C -0.075 4.075 21 Cl -0.045 7.045 22 N -0.246 5.246 23 C -0.110 4.110 24 C -0.010 4.010 25 O -0.313 6.313 26 C -0.001 4.001 27 C -0.111 4.111 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.173 0.827 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.076 0.924 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.921 -20.985 -3.914 22.153 hybrid contribution -1.004 1.508 -0.432 1.862 sum -6.925 -19.478 -4.347 21.124 Atomic orbital electron populations 1.22588 0.81421 1.03220 1.02657 1.43666 1.05250 1.04558 1.66726 1.18583 1.14429 0.89428 1.23314 0.93468 1.26088 0.98705 0.94133 0.99202 1.69826 1.46305 1.00067 1.38395 0.86139 0.79768 0.79601 0.79335 1.16825 1.21124 1.17378 1.20597 0.87684 0.85023 0.79477 1.90513 1.15922 1.87338 1.52727 1.20543 0.98083 0.90426 0.90675 0.90873 1.19265 0.96312 1.00225 0.93040 1.21136 0.94409 0.95086 0.99203 1.21649 1.00693 0.99157 0.91811 1.21575 0.92319 0.97109 1.00303 1.21327 0.99357 0.97713 0.95121 1.21081 0.89762 0.99984 0.96671 1.98321 1.35761 1.73490 1.96943 1.61980 1.58950 1.03142 1.00566 1.22958 0.97026 0.89172 1.01811 1.22819 1.01377 0.95683 0.81081 1.87947 1.74228 1.32595 1.36526 1.22599 0.97382 0.82412 0.97663 1.22787 0.99610 0.98773 0.89920 0.91678 0.92047 0.89461 0.91037 0.85226 0.82305 0.81165 0.82720 0.93897 0.88464 0.91876 0.85545 0.92348 0.86495 0.92354 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.79 8.68 127.77 1.11 2.90 16 2 N -0.48 -24.25 2.46 -658.88 -1.62 -25.87 16 3 C -0.33 -19.88 9.28 84.04 0.78 -19.10 16 4 H 0.05 3.29 7.99 -2.91 -0.02 3.27 16 5 C 0.02 1.25 5.31 84.93 0.45 1.70 16 6 N -0.91 -55.25 13.96 21.66 0.30 -54.95 16 7 Si 0.93 43.54 25.38 68.60 1.74 45.28 16 8 H -0.24 -10.16 6.43 99.48 0.64 -9.52 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 10 H -0.25 -11.55 7.11 99.48 0.71 -10.84 16 11 C 0.48 23.38 5.03 87.66 0.44 23.82 16 12 O -0.58 -33.04 16.85 -3.07 -0.05 -33.09 16 13 C 0.11 4.17 1.49 43.42 0.06 4.24 16 14 H 0.07 2.57 4.45 -2.39 -0.01 2.56 16 15 C -0.09 -2.85 3.77 -19.84 -0.07 -2.93 16 16 C -0.08 -2.34 7.93 22.26 0.18 -2.16 16 17 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 18 C -0.10 -1.78 10.05 22.27 0.22 -1.55 16 19 C -0.12 -2.67 9.83 22.29 0.22 -2.45 16 20 C -0.05 -1.43 6.31 22.32 0.14 -1.29 16 21 Cl -0.07 -2.22 24.48 -2.72 -0.07 -2.29 16 22 N -0.52 -16.67 3.84 -878.83 -3.37 -20.04 16 23 C 0.02 0.43 5.22 86.31 0.45 0.88 16 24 C 0.07 1.37 7.01 72.01 0.50 1.87 16 25 O -0.39 -9.79 10.83 -148.98 -1.61 -11.41 16 26 C 0.08 1.97 7.01 72.01 0.50 2.47 16 27 C 0.02 0.55 5.41 86.31 0.47 1.02 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.63 3.84 -2.39 -0.01 2.62 16 30 H 0.09 3.18 2.73 -2.39 -0.01 3.17 16 31 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.13 4.13 7.67 -2.91 -0.02 4.11 16 33 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.10 2.19 6.02 -2.39 -0.01 2.17 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.06 2.27 7.01 -2.39 -0.02 2.25 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.18 350.00 1.98 -74.20 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.97 Total: 20.98 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.68 Total: 7.18 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -4.69 Total: -100.86 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.66 Total: -44.50 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.74 Total: 45.28 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.29 kcal Total: -76.18 1.98 -74.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143857266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.340 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds