Wall clock time and date at job start Tue Mar 31 2020 20:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42893 * 109.47477 * 2 1 4 4 C 1.34935 * 117.00390 * 179.97438 * 3 2 1 5 5 O 1.21654 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.41747 * 119.99938 * 180.02562 * 4 3 2 7 7 C 1.35133 * 119.99883 * 180.02562 * 6 4 3 8 8 C 1.46912 * 120.00058 * 180.02562 * 7 6 4 9 9 C 1.40566 * 120.50870 * 180.02562 * 8 7 6 10 10 C 1.36836 * 118.46808 * 179.97438 * 9 8 7 11 11 C 1.39392 * 119.41308 * 359.97438 * 10 9 8 12 12 N 1.38692 * 119.50429 * 179.97438 * 11 10 9 13 13 C 1.38415 * 120.00535 * 354.23867 * 12 11 10 14 14 C 1.38949 * 119.99802 * 298.39351 * 13 12 11 15 15 H 1.08004 * 120.00477 * 162.51150 * 14 13 12 16 16 C 1.40864 * 120.00053 * 342.51281 * 14 13 12 17 17 N 1.30327 * 120.00256 * 348.97469 * 16 14 13 18 18 Si 1.86807 * 120.00118 * 168.97856 * 16 14 13 19 19 H 1.48493 * 109.47146 * 59.99516 * 18 16 14 20 20 H 1.48498 * 109.47103 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46820 * 299.99449 * 18 16 14 22 22 C 1.41134 * 120.00162 * 118.38620 * 13 12 11 23 23 C 1.43205 * 120.00180 * 185.19615 * 22 13 12 24 24 N 9.20783 * 165.33945 * 160.33681 * 7 1 2 25 25 C 1.43203 * 120.00174 * 5.20200 * 22 13 12 26 26 N 8.80566 * 149.40345 * 139.03566 * 6 1 2 27 27 N 1.32600 * 120.98710 * 0.26426 * 11 10 9 28 28 C 1.31635 * 121.66695 * 359.46921 * 27 11 10 29 29 H 1.09004 * 109.47496 * 60.00006 * 1 2 3 30 30 H 1.09004 * 109.47596 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47334 * 299.99888 * 1 2 3 32 32 H 1.09010 * 109.47040 * 239.99892 * 2 1 3 33 33 H 1.09005 * 109.47115 * 120.00377 * 2 1 3 34 34 H 1.07999 * 120.00684 * 359.97438 * 6 4 3 35 35 H 1.07997 * 119.99473 * 359.97438 * 7 6 4 36 36 H 1.08006 * 120.76282 * 359.97438 * 9 8 7 37 37 H 1.08004 * 120.29004 * 179.97438 * 10 9 8 38 38 H 0.97008 * 119.99683 * 174.50982 * 12 11 10 39 39 H 0.96989 * 120.00172 * 185.05050 * 17 16 14 40 40 H 1.08000 * 119.76538 * 180.25391 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3440 1.5240 0.0005 5 8 4.0851 0.5592 0.0005 6 6 3.8858 2.8338 0.0011 7 6 5.2255 3.0109 0.0011 8 6 5.7870 4.3684 0.0023 9 6 7.1789 4.5650 0.0018 10 6 7.6566 5.8472 0.0024 11 6 6.7577 6.9126 0.0029 12 7 7.2398 8.2131 0.0041 13 6 8.5985 8.4475 0.1250 14 6 9.2753 8.0376 1.2673 15 1 10.3522 7.9565 1.2571 16 6 8.5567 7.7278 2.4386 17 7 7.2911 8.0265 2.5249 18 14 9.4179 6.8888 3.8683 19 1 10.5320 7.7459 4.3469 20 1 8.4487 6.6734 4.9725 21 1 9.9575 5.5793 3.4215 22 6 9.2967 9.1026 -0.9120 23 6 10.7196 9.2463 -0.8378 24 7 11.8483 9.3600 -0.7806 25 6 8.5822 9.6238 -2.0383 26 7 8.0157 10.0357 -2.9344 27 7 5.4486 6.7013 0.0081 28 6 4.9449 5.4852 0.0026 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2280 3.6904 0.0007 35 1 5.8833 2.1544 0.0011 36 1 7.8557 3.7232 0.0009 37 1 8.7207 6.0322 0.0024 38 1 6.6242 8.9586 -0.0759 39 1 6.8140 7.8805 3.3566 40 1 3.8735 5.3486 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:16 Heat of formation + Delta-G solvation = 22.975572 kcal Electronic energy + Delta-G solvation = -26812.979791 eV Core-core repulsion = 22786.260788 eV Total energy + Delta-G solvation = -4026.719003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60034 -40.08068 -37.68388 -36.90351 -35.47923 -34.83934 -34.43203 -33.40468 -32.18161 -31.77096 -30.80628 -28.49257 -27.34687 -25.13504 -23.61283 -22.96133 -22.10775 -21.30185 -19.69751 -19.13527 -18.11919 -17.50703 -17.40631 -16.71170 -16.63889 -16.41730 -15.75148 -15.07856 -14.78408 -14.28016 -14.21334 -14.05677 -13.72304 -13.64915 -13.03530 -12.92941 -12.83990 -12.73062 -12.44348 -12.21833 -12.15458 -12.04950 -11.82760 -11.74040 -11.70713 -11.66520 -11.65778 -11.27341 -11.07946 -11.02460 -10.66863 -10.62704 -10.56266 -10.25624 -9.67405 -9.32004 -9.13688 -8.34137 -7.89932 -7.00507 -5.62801 0.49194 1.69966 1.83332 2.19484 2.58532 2.64308 2.74546 2.79200 3.15215 3.25630 3.54829 3.75472 3.94403 4.02630 4.20373 4.34150 4.69140 4.69552 4.78716 4.83023 4.99267 5.02465 5.03747 5.09753 5.25434 5.36106 5.46203 5.49366 5.51832 5.54767 5.70815 6.02607 6.07036 6.07908 6.15311 6.20360 6.39718 6.42526 6.58664 6.76666 6.89049 7.10341 7.44522 7.51543 7.79959 7.93001 8.05069 8.59842 8.84612 8.98795 9.02001 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.002610 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.831480 B =10727.426880 C =11770.748428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.508 3.492 5 O -0.530 6.530 6 C -0.260 4.260 7 C 0.062 3.938 8 C -0.237 4.237 9 C -0.009 4.009 10 C -0.229 4.229 11 C 0.469 3.531 12 N -0.625 5.625 13 C 0.370 3.630 14 C -0.368 4.368 15 H 0.116 0.884 16 C 0.067 3.933 17 N -0.710 5.710 18 Si 0.924 3.076 19 H -0.251 1.251 20 H -0.267 1.267 21 H -0.248 1.248 22 C -0.307 4.307 23 C 0.324 3.676 24 N -0.528 5.528 25 C 0.306 3.694 26 N -0.528 5.528 27 N -0.546 5.546 28 C 0.188 3.812 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.148 0.852 38 H 0.410 0.590 39 H 0.306 0.694 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 -13.171 5.087 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.357 3.643 5 O -0.422 6.422 6 C -0.280 4.280 7 C 0.042 3.958 8 C -0.243 4.243 9 C -0.034 4.034 10 C -0.253 4.253 11 C 0.232 3.768 12 N -0.245 5.245 13 C 0.266 3.734 14 C -0.396 4.396 15 H 0.134 0.866 16 C -0.166 4.166 17 N -0.328 5.328 18 Si 0.745 3.255 19 H -0.175 1.175 20 H -0.192 1.192 21 H -0.172 1.172 22 C -0.325 4.325 23 C 0.016 3.984 24 N -0.210 5.210 25 C -0.001 4.001 26 N -0.210 5.210 27 N -0.263 5.263 28 C 0.026 3.974 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.348 -11.890 3.917 16.242 hybrid contribution 0.204 -1.010 1.095 1.503 sum -10.144 -12.900 5.012 17.159 Atomic orbital electron populations 1.21805 0.92792 1.02789 1.03512 1.22566 0.95265 0.81210 1.02275 1.86210 1.24685 1.31668 1.84638 1.19974 0.80287 0.90838 0.73152 1.90861 1.60066 1.43465 1.47819 1.20953 0.96125 0.94574 1.16343 1.22339 0.94348 0.95679 0.83435 1.19452 0.94387 0.93213 1.17258 1.21195 0.93756 0.96977 0.91436 1.21401 1.01997 0.91845 1.10053 1.18222 0.88191 0.85394 0.84980 1.41286 1.06237 1.04424 1.72570 1.16705 0.79565 0.87641 0.89475 1.20381 0.97360 1.29433 0.92381 0.86638 1.26563 0.94720 0.93365 1.01911 1.69488 1.08863 1.25371 1.29058 0.85974 0.80407 0.81052 0.78085 1.17497 1.19162 1.17159 1.12811 0.84043 1.35557 1.00094 1.24633 0.91243 0.90807 0.91753 1.81082 1.12295 1.16727 1.10918 1.25211 0.92570 0.90905 0.91451 1.81149 1.09809 1.17284 1.12732 1.67175 1.12680 1.24743 1.21687 1.22722 0.99354 0.86037 0.89250 0.91499 0.90470 0.91508 0.91685 0.91701 0.84532 0.85019 0.84981 0.83480 0.75258 0.88159 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.15 0.38 -0.60 16 2 C 0.06 0.57 6.10 37.15 0.23 0.79 16 3 O -0.35 -4.16 10.10 -41.14 -0.42 -4.58 16 4 C 0.51 6.61 7.70 32.07 0.25 6.85 16 5 O -0.53 -8.08 15.88 -19.38 -0.31 -8.39 16 6 C -0.26 -3.03 9.34 -39.35 -0.37 -3.40 16 7 C 0.06 0.73 9.43 -37.18 -0.35 0.38 16 8 C -0.24 -3.16 5.89 -104.90 -0.62 -3.78 16 9 C -0.01 -0.12 9.88 -39.21 -0.39 -0.51 16 10 C -0.23 -3.68 8.44 -39.66 -0.33 -4.02 16 11 C 0.47 8.20 6.01 -155.06 -0.93 7.26 16 12 N -0.63 -11.40 3.30 -9.74 -0.03 -11.43 16 13 C 0.37 7.01 4.93 -83.53 -0.41 6.59 16 14 C -0.37 -6.74 7.02 -38.33 -0.27 -7.01 16 15 H 0.12 2.13 6.95 -52.48 -0.36 1.77 16 16 C 0.07 1.15 4.67 -17.20 -0.08 1.07 16 17 N -0.71 -12.49 10.85 55.60 0.60 -11.89 16 18 Si 0.92 13.55 29.58 -169.99 -5.03 8.52 16 19 H -0.25 -3.79 7.11 56.52 0.40 -3.39 16 20 H -0.27 -3.90 7.11 56.52 0.40 -3.50 16 21 H -0.25 -3.63 7.11 56.52 0.40 -3.23 16 22 C -0.31 -6.24 5.88 -104.95 -0.62 -6.86 16 23 C 0.32 6.91 13.87 -22.47 -0.31 6.60 16 24 N -0.53 -11.82 18.54 41.83 0.78 -11.05 16 25 C 0.31 6.60 14.83 -22.43 -0.33 6.27 16 26 N -0.53 -12.02 18.55 41.89 0.78 -11.24 16 27 N -0.55 -9.20 10.38 -12.01 -0.12 -9.33 16 28 C 0.19 2.66 10.59 -17.03 -0.18 2.48 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.59 8.13 -51.92 -0.42 0.17 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.14 1.37 6.09 -52.49 -0.32 1.05 16 35 H 0.13 1.50 7.45 -52.49 -0.39 1.11 16 36 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 37 H 0.15 2.40 6.16 -52.48 -0.32 2.08 16 38 H 0.41 7.53 8.94 -40.82 -0.36 7.16 16 39 H 0.31 5.02 8.29 -40.82 -0.34 4.68 16 40 H 0.16 1.74 6.18 -52.49 -0.32 1.42 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -24.96 372.17 -6.24 -31.20 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.76 Total: 10.44 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -4.34 Total: 12.13 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 2.00 Total: -54.94 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.72 Total: -12.97 kcal Atomic # 14 Polarization: 13.55 SS G_CDS: -5.03 Total: 8.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -24.96 -6.24 -31.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.180 kcal (2) G-P(sol) polarization free energy of solvation -24.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds