Wall clock time and date at job start Tue Mar 31 2020 20:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42893 * 109.47477 * 2 1 4 4 C 1.34935 * 117.00390 * 179.97438 * 3 2 1 5 5 O 1.21654 * 119.99755 * 0.02562 * 4 3 2 6 6 C 1.41747 * 119.99938 * 180.02562 * 4 3 2 7 7 C 1.35133 * 119.99883 * 180.02562 * 6 4 3 8 8 C 1.46912 * 120.00058 * 180.02562 * 7 6 4 9 9 C 1.40566 * 120.50870 * 180.02562 * 8 7 6 10 10 C 1.36836 * 118.46808 * 179.97438 * 9 8 7 11 11 C 1.39392 * 119.41308 * 359.97438 * 10 9 8 12 12 N 1.38692 * 119.50429 * 179.97438 * 11 10 9 13 13 C 1.38415 * 120.00535 * 354.23867 * 12 11 10 14 14 C 1.38949 * 119.99802 * 298.39351 * 13 12 11 15 15 H 1.08004 * 120.00477 * 162.51150 * 14 13 12 16 16 C 1.40864 * 120.00053 * 342.51281 * 14 13 12 17 17 N 1.30327 * 120.00256 * 348.97469 * 16 14 13 18 18 Si 1.86807 * 120.00118 * 168.97856 * 16 14 13 19 19 H 1.48493 * 109.47146 * 59.99516 * 18 16 14 20 20 H 1.48498 * 109.47103 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46820 * 299.99449 * 18 16 14 22 22 C 1.41134 * 120.00162 * 118.38620 * 13 12 11 23 23 C 1.43205 * 120.00180 * 185.19615 * 22 13 12 24 24 N 9.20783 * 165.33945 * 160.33681 * 7 1 2 25 25 C 1.43203 * 120.00174 * 5.20200 * 22 13 12 26 26 N 8.80566 * 149.40345 * 139.03566 * 6 1 2 27 27 N 1.32600 * 120.98710 * 0.26426 * 11 10 9 28 28 C 1.31635 * 121.66695 * 359.46921 * 27 11 10 29 29 H 1.09004 * 109.47496 * 60.00006 * 1 2 3 30 30 H 1.09004 * 109.47596 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47334 * 299.99888 * 1 2 3 32 32 H 1.09010 * 109.47040 * 239.99892 * 2 1 3 33 33 H 1.09005 * 109.47115 * 120.00377 * 2 1 3 34 34 H 1.07999 * 120.00684 * 359.97438 * 6 4 3 35 35 H 1.07997 * 119.99473 * 359.97438 * 7 6 4 36 36 H 1.08006 * 120.76282 * 359.97438 * 9 8 7 37 37 H 1.08004 * 120.29004 * 179.97438 * 10 9 8 38 38 H 0.97008 * 119.99683 * 174.50982 * 12 11 10 39 39 H 0.96989 * 120.00172 * 185.05050 * 17 16 14 40 40 H 1.08000 * 119.76538 * 180.25391 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3440 1.5240 0.0005 5 8 4.0851 0.5592 0.0005 6 6 3.8858 2.8338 0.0011 7 6 5.2255 3.0109 0.0011 8 6 5.7870 4.3684 0.0023 9 6 7.1789 4.5650 0.0018 10 6 7.6566 5.8472 0.0024 11 6 6.7577 6.9126 0.0029 12 7 7.2398 8.2131 0.0041 13 6 8.5985 8.4475 0.1250 14 6 9.2753 8.0376 1.2673 15 1 10.3522 7.9565 1.2571 16 6 8.5567 7.7278 2.4386 17 7 7.2911 8.0265 2.5249 18 14 9.4179 6.8888 3.8683 19 1 10.5320 7.7459 4.3469 20 1 8.4487 6.6734 4.9725 21 1 9.9575 5.5793 3.4215 22 6 9.2967 9.1026 -0.9120 23 6 10.7196 9.2463 -0.8378 24 7 11.8483 9.3600 -0.7806 25 6 8.5822 9.6238 -2.0383 26 7 8.0157 10.0357 -2.9344 27 7 5.4486 6.7013 0.0081 28 6 4.9449 5.4852 0.0026 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2280 3.6904 0.0007 35 1 5.8833 2.1544 0.0011 36 1 7.8557 3.7232 0.0009 37 1 8.7207 6.0322 0.0024 38 1 6.6242 8.9586 -0.0759 39 1 6.8140 7.8805 3.3566 40 1 3.8735 5.3486 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158213255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:15 Heat of formation + Delta-G solvation = 12.846992 kcal Electronic energy + Delta-G solvation = -26813.418999 eV Core-core repulsion = 22786.260788 eV Total energy + Delta-G solvation = -4027.158211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60724 -41.26096 -39.03141 -37.89813 -37.07008 -36.53635 -35.65410 -34.69786 -33.24846 -32.58637 -32.14290 -29.65245 -28.86222 -26.16597 -24.66044 -23.97662 -23.25419 -22.50031 -20.92080 -20.42607 -19.17346 -18.94784 -18.65411 -17.86652 -17.65758 -17.59360 -16.94829 -16.22741 -15.93588 -15.38361 -15.32022 -15.09781 -14.90225 -14.62934 -14.54446 -14.37344 -13.98418 -13.88233 -13.60163 -13.50231 -13.39595 -13.28442 -13.16871 -13.02047 -12.94370 -12.86893 -12.73733 -12.66440 -12.42984 -12.23620 -11.95789 -11.60477 -11.54188 -11.43537 -10.92242 -10.45366 -10.32166 -9.75301 -9.21987 -8.28391 -7.18083 -0.55637 0.46689 0.58633 1.02392 1.36715 1.50891 1.54784 1.92672 2.01773 2.06237 2.14159 2.20676 2.23207 2.56020 2.63887 3.14764 3.39085 3.70619 3.78827 3.81706 4.00529 4.04467 4.07715 4.14768 4.23038 4.32608 4.40018 4.42540 4.59852 4.64312 4.82358 4.95500 4.98994 5.02660 5.13299 5.18508 5.32984 5.38516 5.43458 5.53319 5.59432 5.80606 5.98877 6.10286 6.55499 6.70410 6.81998 7.15684 7.31469 7.38165 7.65549 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.002610 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.831480 B =10727.426880 C =11770.748428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.506 3.494 5 O -0.555 6.555 6 C -0.250 4.250 7 C 0.063 3.937 8 C -0.225 4.225 9 C -0.005 4.005 10 C -0.244 4.244 11 C 0.449 3.551 12 N -0.633 5.633 13 C 0.368 3.632 14 C -0.358 4.358 15 H 0.113 0.887 16 C 0.047 3.953 17 N -0.714 5.714 18 Si 0.974 3.026 19 H -0.257 1.257 20 H -0.262 1.262 21 H -0.244 1.244 22 C -0.322 4.322 23 C 0.331 3.669 24 N -0.553 5.553 25 C 0.314 3.686 26 N -0.559 5.559 27 N -0.565 5.565 28 C 0.178 3.822 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.155 0.845 35 H 0.139 0.861 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.404 0.596 39 H 0.313 0.687 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 -15.246 6.475 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.357 3.643 5 O -0.450 6.450 6 C -0.270 4.270 7 C 0.043 3.957 8 C -0.230 4.230 9 C -0.029 4.029 10 C -0.269 4.269 11 C 0.214 3.786 12 N -0.254 5.254 13 C 0.264 3.736 14 C -0.385 4.385 15 H 0.131 0.869 16 C -0.185 4.185 17 N -0.332 5.332 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.185 1.185 21 H -0.168 1.168 22 C -0.341 4.341 23 C 0.024 3.976 24 N -0.237 5.237 25 C 0.009 3.991 26 N -0.242 5.242 27 N -0.282 5.282 28 C 0.017 3.983 29 H 0.086 0.914 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.179 0.821 37 H 0.158 0.842 38 H 0.241 0.759 39 H 0.126 0.874 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.690 -13.986 5.292 18.981 hybrid contribution 0.415 -0.563 0.766 1.037 sum -11.275 -14.549 6.058 19.378 Atomic orbital electron populations 1.21823 0.90510 1.04293 1.03659 1.22854 0.97081 0.80073 1.02224 1.86214 1.23884 1.33177 1.84154 1.20200 0.80638 0.90936 0.72534 1.90852 1.60712 1.44375 1.49069 1.21118 0.96332 0.94635 1.14869 1.22281 0.94612 0.95003 0.83795 1.19572 0.94209 0.93656 1.15552 1.21540 0.94550 0.96943 0.89889 1.21425 1.01528 0.92563 1.11364 1.18372 0.88799 0.85223 0.86236 1.41199 1.05616 1.04760 1.73777 1.16659 0.80120 0.87611 0.89200 1.20562 0.97379 1.27967 0.92553 0.86887 1.27060 0.95012 0.93520 1.02945 1.69504 1.09461 1.24435 1.29774 0.85246 0.79419 0.80184 0.75900 1.18059 1.18540 1.16759 1.12859 0.83621 1.37070 1.00560 1.24762 0.91358 0.90286 0.91206 1.81068 1.12819 1.18021 1.11753 1.25385 0.92098 0.90375 0.91278 1.81129 1.10636 1.18766 1.13668 1.67166 1.12556 1.26204 1.22249 1.23209 1.00786 0.85473 0.88785 0.91355 0.88314 0.91312 0.91802 0.91759 0.82770 0.84319 0.82100 0.84225 0.75892 0.87398 0.80171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.05 0.87 6.10 71.98 0.44 1.31 16 3 O -0.36 -7.69 10.10 -58.51 -0.59 -8.28 16 4 C 0.51 12.15 7.70 68.69 0.53 12.68 16 5 O -0.56 -16.07 15.88 19.33 0.31 -15.77 16 6 C -0.25 -5.15 9.34 22.42 0.21 -4.94 16 7 C 0.06 1.32 9.43 23.83 0.22 1.54 16 8 C -0.22 -5.43 5.89 -20.04 -0.12 -5.55 16 9 C 0.00 -0.12 9.88 22.51 0.22 0.11 16 10 C -0.24 -7.66 8.44 22.22 0.19 -7.47 16 11 C 0.45 15.51 6.01 133.17 0.80 16.31 16 12 N -0.63 -23.29 3.30 -184.72 -0.61 -23.90 16 13 C 0.37 14.07 4.93 38.98 0.19 14.26 16 14 C -0.36 -12.95 7.02 23.08 0.16 -12.79 16 15 H 0.11 4.13 6.95 -2.91 -0.02 4.11 16 16 C 0.05 1.54 4.67 85.56 0.40 1.94 16 17 N -0.71 -24.31 10.85 21.98 0.24 -24.08 16 18 Si 0.97 26.04 29.58 68.60 2.03 28.07 16 19 H -0.26 -7.11 7.11 99.48 0.71 -6.40 16 20 H -0.26 -6.75 7.11 99.48 0.71 -6.04 16 21 H -0.24 -6.39 7.11 99.48 0.71 -5.69 16 22 C -0.32 -13.35 5.88 -20.07 -0.12 -13.47 16 23 C 0.33 14.32 13.87 88.33 1.23 15.54 16 24 N -0.55 -25.01 18.54 19.00 0.35 -24.66 16 25 C 0.31 13.89 14.83 88.32 1.31 15.20 16 26 N -0.56 -26.02 18.55 19.02 0.35 -25.67 16 27 N -0.56 -18.52 10.38 -191.92 -1.99 -20.52 16 28 C 0.18 4.67 10.59 85.12 0.90 5.57 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 33 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 34 H 0.15 2.58 6.09 -2.91 -0.02 2.56 16 35 H 0.14 2.78 7.45 -2.91 -0.02 2.76 16 36 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.14 4.52 6.16 -2.91 -0.02 4.50 16 38 H 0.40 15.22 8.94 -92.70 -0.83 14.39 16 39 H 0.31 9.76 8.29 -92.72 -0.77 8.99 16 40 H 0.18 3.57 6.18 -2.91 -0.02 3.56 16 Total: -1.00 -53.16 372.17 7.70 -45.46 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.31 Total: 29.89 kcal Atomic # 6 Polarization: 32.13 SS G_CDS: 7.31 Total: 39.43 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -1.66 Total: -118.82 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.28 Total: -24.04 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: 2.03 Total: 28.07 kcal Total: -53.16 7.70 -45.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.312 kcal (2) G-P(sol) polarization free energy of solvation -53.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds