Wall clock time and date at job start Tue Mar 31 2020 21:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.36016 * 116.99556 * 2 1 4 4 C 1.38825 * 120.06999 * 270.02325 * 3 2 1 5 5 F 1.35105 * 120.03778 * 0.02562 * 4 3 2 6 6 C 1.38376 * 119.93270 * 179.97438 * 4 3 2 7 7 C 1.38255 * 120.06448 * 0.02562 * 6 4 3 8 8 C 1.50705 * 119.92652 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.46986 * 90.00085 * 8 7 6 10 10 O 1.21275 * 120.00296 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99784 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99921 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47186 * 90.00147 * 12 11 9 14 14 H 1.07998 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99875 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99986 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46835 * 120.00161 * 17 15 13 20 20 H 1.48500 * 109.47234 * 239.99936 * 17 15 13 21 21 C 1.46500 * 119.99715 * 0.02562 * 11 9 8 22 22 C 1.52999 * 109.47417 * 90.00198 * 21 11 9 23 23 C 1.47200 * 109.47336 * 179.97438 * 22 21 11 24 24 N 9.37302 * 157.23048 * 156.56982 * 3 1 2 25 25 C 1.38246 * 120.14200 * 0.02562 * 7 6 4 26 26 C 1.38377 * 120.06835 * 359.97438 * 25 7 6 27 27 F 1.35102 * 120.03361 * 180.02562 * 26 25 7 28 28 H 1.09000 * 109.46727 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46570 * 299.99082 * 1 2 3 30 30 H 1.08988 * 109.47384 * 59.99705 * 1 2 3 31 31 H 1.07997 * 119.96446 * 180.27709 * 6 4 3 32 32 H 1.08995 * 109.46702 * 210.00108 * 8 7 6 33 33 H 1.09000 * 109.46952 * 330.00024 * 8 7 6 34 34 H 1.09005 * 109.47120 * 210.00264 * 12 11 9 35 35 H 1.08998 * 109.46906 * 329.99396 * 12 11 9 36 36 H 0.96995 * 119.99931 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.46596 * 209.99851 * 21 11 9 38 38 H 1.08996 * 109.47467 * 329.99661 * 21 11 9 39 39 H 1.09001 * 109.46859 * 299.99959 * 22 21 11 40 40 H 1.09004 * 109.46949 * 59.99158 * 22 21 11 41 41 H 1.07998 * 119.96787 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 2.3618 1.8320 -1.2014 5 9 2.0553 1.2325 -2.3727 6 6 2.9894 3.0652 -1.1981 7 6 3.3030 3.6796 0.0001 8 6 3.9870 5.0224 0.0001 9 6 2.9490 6.1149 0.0007 10 8 1.7700 5.8312 0.0006 11 7 3.3311 7.4074 0.0013 12 6 2.3221 8.4695 0.0024 13 6 1.9768 8.8328 1.4236 14 1 2.4603 8.3233 2.2439 15 6 1.0428 9.8151 1.6765 16 7 0.4530 10.4345 0.6776 17 14 0.6143 10.2650 3.4382 18 1 1.4108 9.4276 4.3707 19 1 0.9246 11.6982 3.6725 20 1 -0.8329 10.0273 3.6718 21 6 4.7555 7.7502 0.0008 22 6 5.2507 7.8704 -1.4418 23 6 6.6817 8.2154 -1.4423 24 7 7.7868 8.4798 -1.4424 25 6 2.9912 3.0643 1.1982 26 6 2.3636 1.8310 1.2015 27 9 2.0588 1.2305 2.3727 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8898 31 1 3.2309 3.5501 -2.1324 32 1 4.6101 5.1127 0.8898 33 1 4.6095 5.1131 -0.8901 34 1 2.7168 9.3463 -0.5111 35 1 1.4264 8.1202 -0.5113 36 1 -0.2038 11.1258 0.8555 37 1 4.9006 8.7002 0.5152 38 1 5.3172 6.9697 0.5139 39 1 5.1054 6.9205 -1.9562 40 1 4.6888 8.6510 -1.9549 41 1 3.2371 3.5469 2.1325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181649982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:05 Heat of formation + Delta-G solvation = -109.150187 kcal Electronic energy + Delta-G solvation = -28646.974284 eV Core-core repulsion = 24163.836692 eV Total energy + Delta-G solvation = -4483.137592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11588 -49.07462 -40.09511 -39.22386 -37.71584 -36.88029 -35.32087 -33.07618 -32.17635 -30.92880 -30.55301 -28.72164 -27.32330 -26.14323 -24.11241 -23.27245 -23.18803 -21.79084 -18.83233 -18.29170 -17.88448 -17.66856 -17.49105 -16.72934 -16.53648 -16.45654 -15.97436 -15.65263 -15.42066 -15.16992 -14.94404 -14.80519 -14.67852 -14.61798 -14.38120 -13.83889 -13.72546 -13.26517 -12.97036 -12.55659 -12.50459 -12.42712 -12.39492 -12.29952 -11.97470 -11.83258 -11.67894 -11.49915 -11.32658 -11.04341 -10.90791 -10.69285 -10.32132 -10.25608 -9.76648 -9.28547 -8.92324 -8.76032 -8.53524 -7.95808 -6.15208 -4.20053 0.63384 0.80715 2.66255 2.75400 2.89200 3.14550 3.23895 3.32655 3.35200 3.41618 3.54505 3.68567 4.13295 4.18281 4.33688 4.37498 4.59266 4.84423 4.94122 5.00114 5.04052 5.07073 5.10665 5.14708 5.19825 5.21627 5.35442 5.40298 5.46041 5.55765 5.58586 5.75474 5.82122 5.99529 6.13818 6.33573 6.83174 7.10373 7.26453 7.33503 7.51757 7.80584 8.09541 8.13332 8.72732 8.88022 9.45981 10.92966 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009003 B = 0.003503 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.470899 B = 7990.786662 C = 9984.870518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.018 3.982 4 C 0.114 3.886 5 F -0.125 7.125 6 C -0.137 4.137 7 C -0.002 4.002 8 C -0.112 4.112 9 C 0.509 3.491 10 O -0.523 6.523 11 N -0.595 5.595 12 C 0.245 3.755 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.115 3.885 22 C -0.051 4.051 23 C 0.216 3.784 24 N -0.444 5.444 25 C -0.135 4.135 26 C 0.115 3.885 27 F -0.125 7.125 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -15.202 -3.721 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.239 6.239 3 C -0.027 4.027 4 C 0.094 3.906 5 F -0.104 7.104 6 C -0.156 4.156 7 C -0.002 4.002 8 C -0.152 4.152 9 C 0.295 3.705 10 O -0.399 6.399 11 N -0.327 5.327 12 C 0.126 3.874 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.011 4.011 22 C -0.092 4.092 23 C -0.102 4.102 24 N -0.121 5.121 25 C -0.154 4.154 26 C 0.095 3.905 27 F -0.103 7.103 28 H 0.117 0.883 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.914 -15.023 -3.761 16.960 hybrid contribution -1.058 0.271 0.966 1.458 sum 5.856 -14.752 -2.794 16.116 Atomic orbital electron populations 1.23132 0.78291 1.03670 1.01298 1.86122 1.20565 1.23013 1.94161 1.18504 1.04106 0.89490 0.90630 1.17597 1.00473 0.92132 0.80434 1.91519 1.90942 1.83076 1.44842 1.20978 1.01169 0.93582 0.99905 1.19003 0.95484 0.94385 0.91365 1.20918 0.98346 0.90245 1.05701 1.20055 0.89351 0.83263 0.77852 1.90737 1.18255 1.82230 1.48697 1.48218 1.06271 1.06656 1.71564 1.19374 0.86611 0.83659 0.97746 1.21437 1.23451 1.19719 0.92251 0.92284 1.24912 0.95630 0.96009 0.97369 1.69922 1.27430 1.25081 1.30707 0.86475 0.78448 0.78099 0.84602 1.19772 1.20952 1.20880 1.21346 0.82887 1.03738 0.93138 1.19900 0.82869 1.04924 1.01527 1.29100 0.94920 0.93037 0.93170 1.81235 1.12955 1.09371 1.08559 1.21029 1.00832 0.93484 1.00099 1.17616 1.00346 0.92076 0.80475 1.91522 1.90940 1.82995 1.44857 0.88286 0.93023 0.93040 0.83471 0.87325 0.87574 0.94632 0.93514 0.92674 0.88610 0.90470 0.87547 0.86439 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.13 101.05 1.13 1.43 16 2 O -0.32 -4.25 10.15 -19.79 -0.20 -4.45 16 3 C 0.02 0.25 5.74 -39.14 -0.22 0.02 16 4 C 0.11 1.45 7.31 -39.31 -0.29 1.16 16 5 F -0.13 -1.62 17.11 2.25 0.04 -1.58 16 6 C -0.14 -1.57 9.67 -39.52 -0.38 -1.96 16 7 C 0.00 -0.02 4.37 -104.61 -0.46 -0.48 16 8 C -0.11 -1.16 4.38 -29.03 -0.13 -1.29 16 9 C 0.51 8.20 7.67 -10.99 -0.08 8.12 16 10 O -0.52 -11.10 15.61 5.56 0.09 -11.01 16 11 N -0.60 -9.71 2.46 -175.06 -0.43 -10.14 16 12 C 0.24 5.44 5.16 -5.20 -0.03 5.41 16 13 C -0.53 -13.52 9.39 -34.44 -0.32 -13.84 16 14 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 17 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.12 1.31 5.17 -4.04 -0.02 1.29 16 22 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 23 C 0.22 2.31 15.43 -20.75 -0.32 1.99 16 24 N -0.44 -6.04 18.54 42.16 0.78 -5.26 16 25 C -0.14 -1.66 9.67 -39.53 -0.38 -2.04 16 26 C 0.11 1.52 7.31 -39.31 -0.29 1.23 16 27 F -0.12 -1.70 17.11 2.25 0.04 -1.66 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.50 8.14 -51.94 -0.42 0.08 16 31 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 0.89 7.34 -51.93 -0.38 0.51 16 33 H 0.11 0.73 7.13 -51.93 -0.37 0.36 16 34 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 38 H 0.08 0.67 6.44 -51.93 -0.33 0.33 16 39 H 0.11 0.67 7.22 -51.93 -0.38 0.29 16 40 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -33.30 375.51 -5.15 -38.45 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.77 Total: -3.60 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.07 Total: 2.01 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 1.09 Total: -39.45 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.11 Total: -15.47 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.30 -5.15 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181649982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.698 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds