Wall clock time and date at job start Tue Mar 31 2020 20:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99495 * 2 1 4 4 C 1.50702 * 109.47195 * 293.94970 * 3 2 1 5 5 O 1.21290 * 119.99825 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00223 * 180.02562 * 4 3 2 7 7 C 1.37095 * 120.00168 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99975 * 359.97438 * 7 6 4 9 9 C 1.38953 * 120.00104 * 179.97438 * 7 6 4 10 10 N 1.31413 * 120.00022 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99820 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.46728 * 90.00113 * 11 9 7 13 13 H 1.48505 * 109.46906 * 209.99659 * 11 9 7 14 14 H 1.48493 * 109.47148 * 329.99965 * 11 9 7 15 15 C 1.46901 * 110.99728 * 123.94997 * 2 1 3 16 16 H 1.09000 * 110.88834 * 292.16572 * 15 2 1 17 17 C 1.55157 * 111.00508 * 56.04693 * 15 2 1 18 18 C 1.54323 * 102.93924 * 153.57552 * 17 15 2 19 19 N 1.47018 * 107.27252 * 337.80856 * 18 17 15 20 20 C 1.34784 * 125.64722 * 178.90573 * 19 18 17 21 21 O 1.21691 * 119.99730 * 180.02562 * 20 19 18 22 22 C 1.46673 * 120.00100 * 0.02562 * 20 19 18 23 23 C 1.35668 * 126.13236 * 179.97438 * 22 20 19 24 24 N 1.30936 * 114.19081 * 179.97438 * 23 22 20 25 25 C 1.29432 * 117.37008 * 0.02562 * 24 23 22 26 26 S 1.70953 * 110.38562 * 359.72213 * 25 24 23 27 27 C 1.47421 * 108.70379 * 359.16638 * 19 18 17 28 28 H 1.08997 * 109.47228 * 296.04936 * 1 2 3 29 29 H 1.09002 * 109.47201 * 56.05398 * 1 2 3 30 30 H 1.09007 * 109.47001 * 176.04817 * 1 2 3 31 31 H 1.09000 * 109.47909 * 53.94969 * 3 2 1 32 32 H 1.09002 * 109.46656 * 173.95529 * 3 2 1 33 33 H 0.97008 * 119.99755 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99829 * 179.97438 * 10 9 7 35 35 H 1.09002 * 110.71837 * 35.21264 * 17 15 2 36 36 H 1.09000 * 110.87285 * 272.00731 * 17 15 2 37 37 H 1.09003 * 109.88093 * 218.39301 * 18 17 15 38 38 H 1.09001 * 110.01124 * 97.30012 * 18 17 15 39 39 H 1.08001 * 122.90032 * 359.96572 * 23 22 20 40 40 H 1.07995 * 124.80645 * 180.02562 * 25 24 23 41 41 H 1.09006 * 110.36331 * 142.73710 * 27 19 18 42 42 H 1.08996 * 110.37004 * 265.06168 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0187 3.3198 -1.5238 7 6 1.6930 3.9343 -2.7053 8 1 1.1308 3.3983 -3.4557 9 6 2.0863 5.2466 -2.9373 10 7 1.7736 5.8358 -4.0697 11 14 3.0593 6.1734 -1.6397 12 1 4.5116 5.9605 -1.8643 13 1 2.7514 7.6233 -1.7319 14 1 2.6882 5.6732 -0.2917 15 6 1.9954 -0.7659 1.1377 16 1 1.7760 -0.2631 2.0795 17 6 1.4394 -2.2145 1.1378 18 6 2.5363 -3.0055 1.8814 19 7 3.7814 -2.2311 1.7745 20 6 4.9686 -2.5745 2.3124 21 8 5.9370 -1.8536 2.1597 22 6 5.0933 -3.8170 3.0818 23 6 6.2221 -4.2813 3.6741 24 7 6.0686 -5.4190 4.3038 25 6 4.8900 -5.9536 4.2877 26 16 3.8020 -4.9706 3.4088 27 6 3.5149 -1.0137 0.9869 28 1 -0.3633 0.4513 0.9232 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5610 1.9275 0.8308 32 1 3.0796 1.3444 0.1082 33 1 2.5240 3.8011 -0.8499 34 1 2.0478 6.7520 -4.2315 35 1 1.3222 -2.5826 0.1186 36 1 0.4934 -2.2673 1.6767 37 1 2.6669 -3.9833 1.4177 38 1 2.2635 -3.1260 2.9298 39 1 7.1657 -3.7578 3.6298 40 1 4.6295 -6.8860 4.7663 41 1 4.0787 -0.1715 1.3880 42 1 3.7682 -1.1766 -0.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189114902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:19 Heat of formation + Delta-G solvation = 8.919176 kcal Electronic energy + Delta-G solvation = -26432.207785 eV Core-core repulsion = 22540.323202 eV Total energy + Delta-G solvation = -3891.884583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69825 -39.91849 -38.82872 -37.78533 -35.68200 -33.91256 -31.76991 -31.65771 -30.82825 -29.18021 -28.12118 -26.55483 -25.04604 -24.18535 -23.07062 -21.69592 -20.40043 -19.96423 -19.37729 -18.81635 -18.25185 -17.11473 -16.96412 -16.38978 -15.86104 -15.63520 -15.04370 -14.84926 -14.73726 -14.50960 -14.43061 -14.30031 -14.07522 -13.74525 -13.24129 -13.15436 -13.07511 -12.80954 -12.44918 -12.33623 -12.00199 -11.87167 -11.56638 -11.44588 -11.26870 -11.12639 -10.93272 -10.60053 -10.52650 -10.08851 -9.99661 -9.98539 -9.60118 -9.55223 -8.99065 -8.64289 -8.20246 -8.07756 -6.32210 -3.83666 -0.20560 0.72309 1.11539 2.04461 2.45482 2.80938 3.02254 3.07457 3.15440 3.70113 3.75554 3.78981 3.99283 4.09723 4.25105 4.42902 4.60218 4.67633 4.75083 4.85526 4.94282 5.01530 5.09812 5.20189 5.38839 5.47945 5.54189 5.58746 5.60466 5.70912 5.72095 5.76394 5.84870 5.89747 5.94066 6.41098 6.96976 7.03625 7.13795 7.18139 7.56688 7.68953 8.12928 8.58476 8.93826 9.41074 9.81160 10.80729 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002303 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.618510 B =12154.039811 C =13113.882618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.506 5.506 3 C 0.039 3.961 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.590 5.590 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.042 3.958 10 N -0.880 5.880 11 Si 0.879 3.121 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.058 0.942 17 C -0.118 4.118 18 C 0.089 3.911 19 N -0.611 5.611 20 C 0.609 3.391 21 O -0.522 6.522 22 C -0.285 4.285 23 C 0.116 3.884 24 N -0.477 5.477 25 C 0.015 3.985 26 S 0.183 5.817 27 C 0.115 3.885 28 H 0.016 0.984 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.370 0.630 34 H 0.273 0.727 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.189 0.811 40 H 0.203 0.797 41 H 0.082 0.918 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -21.987 19.733 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.230 5.230 3 C -0.092 4.092 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.229 5.229 7 C -0.433 4.433 8 H 0.138 0.862 9 C -0.161 4.161 10 N -0.520 5.520 11 Si 0.705 3.295 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.041 4.041 16 H 0.076 0.924 17 C -0.156 4.156 18 C -0.036 4.036 19 N -0.345 5.345 20 C 0.396 3.604 21 O -0.400 6.400 22 C -0.410 4.410 23 C -0.042 4.042 24 N -0.190 5.190 25 C -0.280 4.280 26 S 0.438 5.562 27 C -0.007 4.007 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.206 0.794 40 H 0.220 0.780 41 H 0.101 0.899 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.943 -22.482 18.596 29.192 hybrid contribution 1.316 1.606 1.769 2.728 sum 2.259 -20.876 20.365 29.252 Atomic orbital electron populations 1.22573 0.85864 1.02420 1.01746 1.61586 1.09126 1.12685 1.39645 1.21967 1.00962 0.89042 0.97269 1.19548 0.85236 0.82474 0.88868 1.90526 1.42725 1.64101 1.46764 1.42214 1.50905 1.11943 1.17863 1.19416 1.33894 0.96288 0.93705 0.86228 1.25042 0.97838 0.96523 0.96745 1.69621 1.45579 1.13620 1.23218 0.86683 0.81006 0.80478 0.81299 1.19531 1.20189 1.19536 1.22749 0.93807 0.94367 0.93213 0.92448 1.22685 0.96924 0.93725 1.02267 1.22239 0.84464 0.95833 1.01020 1.48202 1.08723 1.24340 1.53244 1.16280 0.82001 0.83574 0.78495 1.90884 1.36651 1.52127 1.60287 1.25752 0.98492 1.03380 1.13334 1.22281 0.99169 0.90715 0.92032 1.66328 1.22398 1.10392 1.19920 1.29044 0.92248 1.04830 1.01845 1.84255 1.13198 1.13001 1.45729 1.22282 0.95172 0.86443 0.96834 0.96528 0.88221 0.91677 0.93105 0.89169 0.79705 0.91599 0.88561 0.89527 0.90406 0.90778 0.79407 0.78020 0.89940 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.93 60.07 0.54 0.83 16 2 N -0.51 -7.24 4.40 -233.88 -1.03 -8.27 16 3 C 0.04 0.62 5.35 -4.98 -0.03 0.59 16 4 C 0.45 9.92 7.47 -10.99 -0.08 9.84 16 5 O -0.56 -14.30 13.91 5.55 0.08 -14.22 16 6 N -0.59 -13.80 5.09 -10.96 -0.06 -13.85 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.80 7.39 -52.48 -0.39 3.42 16 9 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 10 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 11 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 15 C 0.07 0.74 2.70 -65.68 -0.18 0.56 16 16 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 17 C -0.12 -0.94 5.10 -24.90 -0.13 -1.07 16 18 C 0.09 0.66 5.20 -3.07 -0.02 0.64 16 19 N -0.61 -6.53 3.33 -172.20 -0.57 -7.10 16 20 C 0.61 7.47 7.82 -12.85 -0.10 7.37 16 21 O -0.52 -8.23 17.12 5.20 0.09 -8.14 16 22 C -0.29 -2.77 6.40 -37.10 -0.24 -3.01 16 23 C 0.12 1.13 11.09 -18.85 -0.21 0.92 16 24 N -0.48 -4.36 10.51 -15.38 -0.16 -4.52 16 25 C 0.01 0.09 12.22 51.75 0.63 0.72 16 26 S 0.18 1.07 18.69 -107.50 -2.01 -0.94 16 27 C 0.11 1.35 5.60 -2.65 -0.01 1.34 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 1.76 5.82 -51.93 -0.30 1.46 16 30 H 0.06 0.74 6.99 -51.93 -0.36 0.38 16 31 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.09 1.29 6.96 -51.93 -0.36 0.93 16 33 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.08 0.49 7.04 -51.93 -0.37 0.13 16 38 H 0.07 0.44 6.84 -51.93 -0.36 0.08 16 39 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.20 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.08 1.02 7.72 -51.93 -0.40 0.62 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -34.97 356.71 -7.61 -42.58 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.32 Total: 8.13 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -0.07 Total: 11.14 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -1.05 Total: -58.54 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.17 Total: -22.37 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.01 Total: -0.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.97 -7.61 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189114902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.503 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds