Wall clock time and date at job start Tue Mar 31 2020 20:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99495 * 2 1 4 4 C 1.50702 * 109.47195 * 293.94970 * 3 2 1 5 5 O 1.21290 * 119.99825 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00223 * 180.02562 * 4 3 2 7 7 C 1.37095 * 120.00168 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99975 * 359.97438 * 7 6 4 9 9 C 1.38953 * 120.00104 * 179.97438 * 7 6 4 10 10 N 1.31413 * 120.00022 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99820 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.46728 * 90.00113 * 11 9 7 13 13 H 1.48505 * 109.46906 * 209.99659 * 11 9 7 14 14 H 1.48493 * 109.47148 * 329.99965 * 11 9 7 15 15 C 1.46901 * 110.99728 * 123.94997 * 2 1 3 16 16 H 1.09000 * 110.88834 * 292.16572 * 15 2 1 17 17 C 1.55157 * 111.00508 * 56.04693 * 15 2 1 18 18 C 1.54323 * 102.93924 * 153.57552 * 17 15 2 19 19 N 1.47018 * 107.27252 * 337.80856 * 18 17 15 20 20 C 1.34784 * 125.64722 * 178.90573 * 19 18 17 21 21 O 1.21691 * 119.99730 * 180.02562 * 20 19 18 22 22 C 1.46673 * 120.00100 * 0.02562 * 20 19 18 23 23 C 1.35668 * 126.13236 * 179.97438 * 22 20 19 24 24 N 1.30936 * 114.19081 * 179.97438 * 23 22 20 25 25 C 1.29432 * 117.37008 * 0.02562 * 24 23 22 26 26 S 1.70953 * 110.38562 * 359.72213 * 25 24 23 27 27 C 1.47421 * 108.70379 * 359.16638 * 19 18 17 28 28 H 1.08997 * 109.47228 * 296.04936 * 1 2 3 29 29 H 1.09002 * 109.47201 * 56.05398 * 1 2 3 30 30 H 1.09007 * 109.47001 * 176.04817 * 1 2 3 31 31 H 1.09000 * 109.47909 * 53.94969 * 3 2 1 32 32 H 1.09002 * 109.46656 * 173.95529 * 3 2 1 33 33 H 0.97008 * 119.99755 * 359.97438 * 6 4 3 34 34 H 0.97001 * 119.99829 * 179.97438 * 10 9 7 35 35 H 1.09002 * 110.71837 * 35.21264 * 17 15 2 36 36 H 1.09000 * 110.87285 * 272.00731 * 17 15 2 37 37 H 1.09003 * 109.88093 * 218.39301 * 18 17 15 38 38 H 1.09001 * 110.01124 * 97.30012 * 18 17 15 39 39 H 1.08001 * 122.90032 * 359.96572 * 23 22 20 40 40 H 1.07995 * 124.80645 * 180.02562 * 25 24 23 41 41 H 1.09006 * 110.36331 * 142.73710 * 27 19 18 42 42 H 1.08996 * 110.37004 * 265.06168 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0047 1.4455 -2.1408 6 7 2.0187 3.3198 -1.5238 7 6 1.6930 3.9343 -2.7053 8 1 1.1308 3.3983 -3.4557 9 6 2.0863 5.2466 -2.9373 10 7 1.7736 5.8358 -4.0697 11 14 3.0593 6.1734 -1.6397 12 1 4.5116 5.9605 -1.8643 13 1 2.7514 7.6233 -1.7319 14 1 2.6882 5.6732 -0.2917 15 6 1.9954 -0.7659 1.1377 16 1 1.7760 -0.2631 2.0795 17 6 1.4394 -2.2145 1.1378 18 6 2.5363 -3.0055 1.8814 19 7 3.7814 -2.2311 1.7745 20 6 4.9686 -2.5745 2.3124 21 8 5.9370 -1.8536 2.1597 22 6 5.0933 -3.8170 3.0818 23 6 6.2221 -4.2813 3.6741 24 7 6.0686 -5.4190 4.3038 25 6 4.8900 -5.9536 4.2877 26 16 3.8020 -4.9706 3.4088 27 6 3.5149 -1.0137 0.9869 28 1 -0.3633 0.4513 0.9232 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5610 1.9275 0.8308 32 1 3.0796 1.3444 0.1082 33 1 2.5240 3.8011 -0.8499 34 1 2.0478 6.7520 -4.2315 35 1 1.3222 -2.5826 0.1186 36 1 0.4934 -2.2673 1.6767 37 1 2.6669 -3.9833 1.4177 38 1 2.2635 -3.1260 2.9298 39 1 7.1657 -3.7578 3.6298 40 1 4.6295 -6.8860 4.7663 41 1 4.0787 -0.1715 1.3880 42 1 3.7682 -1.1766 -0.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189114902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:17 Heat of formation + Delta-G solvation = -19.902653 kcal Electronic energy + Delta-G solvation = -26433.457593 eV Core-core repulsion = 22540.323202 eV Total energy + Delta-G solvation = -3893.134391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51710 -40.72565 -40.24234 -38.93209 -36.84376 -35.83358 -33.74805 -32.57279 -31.55797 -29.99510 -29.47438 -27.20425 -26.67164 -25.23390 -24.11511 -22.41298 -21.42875 -21.14295 -20.57806 -20.17150 -19.50045 -18.01944 -17.85098 -17.44237 -17.06564 -16.81666 -16.56919 -15.96734 -15.82382 -15.48036 -15.32779 -15.12351 -14.95992 -14.88796 -14.72314 -14.35985 -14.24501 -13.93951 -13.92156 -13.47872 -13.19737 -12.95594 -12.70795 -12.51578 -12.42551 -12.39934 -11.98032 -11.95088 -11.90428 -11.47149 -11.42659 -10.67323 -10.60940 -10.36063 -10.22808 -10.21087 -9.74880 -9.25875 -8.40982 -6.01006 -0.80305 0.17750 0.57631 1.29268 1.35001 1.35394 1.42891 1.63853 1.96299 2.03609 2.22290 2.60387 3.13143 3.15890 3.22640 3.38258 3.55230 3.68757 4.00689 4.08191 4.12304 4.16696 4.24469 4.33337 4.35304 4.41707 4.47407 4.58682 4.68351 4.73954 4.84284 4.92325 4.99250 5.05667 5.13222 5.28548 5.53428 5.87129 5.98658 6.15298 6.22808 6.56969 6.60089 6.82316 6.89366 7.40753 7.97598 8.76470 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.002303 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.618510 B =12154.039811 C =13113.882618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.051 3.949 4 C 0.454 3.546 5 O -0.601 6.601 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.058 0.942 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.232 1.232 15 C 0.074 3.926 16 H 0.076 0.924 17 C -0.111 4.111 18 C 0.086 3.914 19 N -0.610 5.610 20 C 0.605 3.395 21 O -0.573 6.573 22 C -0.320 4.320 23 C 0.111 3.889 24 N -0.509 5.509 25 C 0.022 3.978 26 S 0.256 5.744 27 C 0.113 3.887 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.388 0.612 34 H 0.278 0.722 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.178 0.822 40 H 0.241 0.759 41 H 0.073 0.927 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -23.877 23.820 33.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.252 5.252 3 C -0.080 4.080 4 C 0.242 3.758 5 O -0.485 6.485 6 N -0.236 5.236 7 C -0.453 4.453 8 H 0.076 0.924 9 C -0.214 4.214 10 N -0.575 5.575 11 Si 0.781 3.219 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.155 1.155 15 C -0.035 4.035 16 H 0.094 0.906 17 C -0.149 4.149 18 C -0.037 4.037 19 N -0.343 5.343 20 C 0.394 3.606 21 O -0.454 6.454 22 C -0.444 4.444 23 C -0.048 4.048 24 N -0.223 5.223 25 C -0.271 4.271 26 S 0.512 5.488 27 C -0.010 4.010 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.223 0.777 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.195 0.805 40 H 0.257 0.743 41 H 0.091 0.909 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.404 -24.426 22.707 33.353 hybrid contribution 1.346 1.983 0.426 2.434 sum 1.750 -22.443 23.134 32.279 Atomic orbital electron populations 1.22453 0.85554 1.03411 1.00653 1.61477 1.09575 1.11900 1.42252 1.21856 1.02330 0.89996 0.93862 1.20784 0.82946 0.81713 0.90404 1.90517 1.44011 1.65004 1.48951 1.42070 1.51895 1.12731 1.16944 1.18989 1.34661 0.96952 0.94688 0.92381 1.26068 0.98694 0.97060 0.99562 1.69799 1.47285 1.14358 1.26035 0.85416 0.78962 0.78282 0.79204 1.18536 1.19967 1.15511 1.22754 0.92747 0.95619 0.92352 0.90589 1.22716 0.98252 0.91409 1.02484 1.22488 0.82688 0.95935 1.02634 1.48251 1.09417 1.24233 1.52358 1.16649 0.81684 0.83990 0.78286 1.90841 1.38314 1.53950 1.62299 1.25585 1.00666 1.03825 1.14326 1.22268 0.99210 0.91162 0.92205 1.66379 1.24142 1.10556 1.21193 1.29750 0.91438 1.05513 1.00358 1.83852 1.10427 1.10400 1.44103 1.22174 0.96136 0.86886 0.95782 0.94390 0.92900 0.89157 0.90131 0.87319 0.77699 0.91214 0.89401 0.86466 0.88938 0.88365 0.80466 0.74280 0.90895 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.93 127.69 1.14 1.82 16 2 N -0.53 -14.12 4.40 -893.87 -3.93 -18.06 16 3 C 0.05 1.52 5.35 85.56 0.46 1.98 16 4 C 0.45 20.10 7.47 87.66 0.66 20.76 16 5 O -0.60 -32.18 13.91 -3.06 -0.04 -32.22 16 6 N -0.59 -28.01 5.09 -306.99 -1.56 -29.57 16 7 C -0.32 -18.91 10.16 84.04 0.85 -18.06 16 8 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 9 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 10 N -0.93 -56.52 13.96 21.66 0.30 -56.22 16 11 Si 0.96 39.38 27.74 68.60 1.90 41.28 16 12 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 15 C 0.07 1.37 2.70 46.23 0.12 1.50 16 16 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 17 C -0.11 -1.33 5.10 31.78 0.16 -1.17 16 18 C 0.09 0.95 5.20 86.73 0.45 1.40 16 19 N -0.61 -12.02 3.33 -816.94 -2.72 -14.74 16 20 C 0.60 14.59 7.82 86.44 0.68 15.27 16 21 O -0.57 -18.72 17.12 -4.32 -0.07 -18.79 16 22 C -0.32 -5.79 6.40 23.88 0.15 -5.64 16 23 C 0.11 2.12 11.09 84.23 0.93 3.05 16 24 N -0.51 -8.45 10.51 -202.57 -2.13 -10.57 16 25 C 0.02 0.19 12.22 130.60 1.60 1.79 16 26 S 0.26 2.04 18.69 -56.49 -1.06 0.98 16 27 C 0.11 2.53 5.60 86.78 0.49 3.02 16 28 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 1.89 5.82 -2.39 -0.01 1.87 16 30 H 0.09 1.81 6.99 -2.38 -0.02 1.79 16 31 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 32 H 0.11 2.90 6.96 -2.39 -0.02 2.88 16 33 H 0.39 15.32 5.76 -92.70 -0.53 14.79 16 34 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 36 H 0.12 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.09 0.80 7.04 -2.39 -0.02 0.78 16 38 H 0.10 0.66 6.84 -2.39 -0.02 0.65 16 39 H 0.18 3.51 8.06 -2.91 -0.02 3.48 16 40 H 0.24 -0.02 8.06 -2.91 -0.02 -0.05 16 41 H 0.07 1.75 7.72 -2.38 -0.02 1.74 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -84.97 356.71 -0.68 -85.65 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.47 Total: 26.92 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 8.16 Total: 25.33 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -10.04 Total: -129.16 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.12 Total: -51.01 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.90 Total: 41.28 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.06 Total: 0.98 kcal Total: -84.97 -0.68 -85.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189114902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.751 kcal (2) G-P(sol) polarization free energy of solvation -84.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds