Wall clock time and date at job start Tue Mar 31 2020 20:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46890 * 111.00125 * 2 1 4 4 C 1.50694 * 109.47487 * 293.95606 * 3 2 1 5 5 O 1.21294 * 120.00212 * 0.02562 * 4 3 2 6 6 N 1.34785 * 120.00218 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99612 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00588 * 359.97438 * 7 6 4 9 9 C 1.38952 * 119.99498 * 179.97438 * 7 6 4 10 10 N 1.31415 * 119.99935 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47180 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47173 * 120.00045 * 11 9 7 14 14 H 1.48495 * 109.47530 * 240.00287 * 11 9 7 15 15 C 1.46898 * 110.99796 * 123.96125 * 2 1 3 16 16 H 1.09006 * 110.88428 * 297.86543 * 15 2 1 17 17 C 1.55155 * 111.00285 * 173.99221 * 15 2 1 18 18 C 1.54323 * 103.10120 * 206.33042 * 17 15 2 19 19 N 1.47489 * 107.03683 * 22.23877 * 18 17 15 20 20 C 1.34768 * 125.59160 * 181.00240 * 19 18 17 21 21 O 1.21574 * 119.99814 * 180.02562 * 20 19 18 22 22 C 1.47694 * 120.00371 * 0.02657 * 20 19 18 23 23 C 1.39481 * 122.10316 * 179.73725 * 22 20 19 24 24 C 1.35001 * 111.68220 * 179.78494 * 23 22 20 25 25 S 1.71752 * 105.45090 * 0.42881 * 24 23 22 26 26 N 1.30602 * 122.10394 * 0.02562 * 22 20 19 27 27 C 1.47428 * 108.75412 * 1.02642 * 19 18 17 28 28 H 1.09000 * 109.46887 * 301.78633 * 1 2 3 29 29 H 1.08996 * 109.47221 * 61.78154 * 1 2 3 30 30 H 1.09001 * 109.47191 * 181.78826 * 1 2 3 31 31 H 1.08997 * 109.47280 * 53.95668 * 3 2 1 32 32 H 1.08998 * 109.47201 * 173.95267 * 3 2 1 33 33 H 0.96990 * 119.99598 * 0.02562 * 6 4 3 34 34 H 0.96996 * 119.99381 * 180.02562 * 10 9 7 35 35 H 1.09000 * 110.72062 * 324.78021 * 17 15 2 36 36 H 1.08999 * 110.72603 * 87.87722 * 17 15 2 37 37 H 1.09006 * 109.88314 * 141.69970 * 18 17 15 38 38 H 1.08997 * 109.88452 * 262.86187 * 18 17 15 39 39 H 1.07999 * 124.16233 * 359.97438 * 23 22 20 40 40 H 1.08003 * 127.27583 * 180.17385 * 24 23 22 41 41 H 1.09005 * 110.36367 * 217.05233 * 27 19 18 42 42 H 1.09000 * 110.45750 * 94.78272 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 -1.2983 5 8 1.0046 1.4457 -2.1407 6 7 2.0181 3.3202 -1.5232 7 6 1.6914 3.9351 -2.7042 8 1 1.1291 3.3993 -3.4546 9 6 2.0839 5.2478 -2.9357 10 7 2.7686 5.8996 -2.0229 11 14 1.6395 6.0854 -4.5451 12 1 0.8723 5.1428 -5.3984 13 1 0.8112 7.2860 -4.2661 14 1 2.8811 6.4935 -5.2502 15 6 1.9954 -0.7661 1.1375 16 1 1.6902 -0.3173 2.0828 17 6 3.5395 -0.8935 1.0553 18 6 3.8249 -2.1962 1.8319 19 7 2.5801 -2.9872 1.8212 20 6 2.4078 -4.1867 2.4109 21 8 1.3338 -4.7516 2.3373 22 6 3.5238 -4.8150 3.1466 23 6 3.3924 -6.0520 3.7775 24 6 4.5399 -6.4286 4.3808 25 16 5.6525 -5.1542 4.0840 26 7 4.6940 -4.2448 3.2519 27 6 1.5563 -2.2495 1.0588 28 1 -0.3633 0.5413 0.8735 29 1 -0.3633 0.4859 -0.9055 30 1 -0.3634 -1.0272 0.0321 31 1 1.5612 1.9272 0.8309 32 1 3.0797 1.3443 0.1083 33 1 2.5234 3.8013 -0.8494 34 1 3.0422 6.8161 -2.1844 35 1 3.8644 -0.9835 0.0187 36 1 4.0229 -0.0436 1.5370 37 1 4.6247 -2.7521 1.3423 38 1 4.1080 -1.9617 2.8580 39 1 2.4852 -6.6380 3.7804 40 1 4.7191 -7.3371 4.9366 41 1 0.5755 -2.3796 1.5164 42 1 1.5379 -2.5853 0.0219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190846174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:15 Heat of formation + Delta-G solvation = 0.482924 kcal Electronic energy + Delta-G solvation = -26350.126226 eV Core-core repulsion = 22457.875820 eV Total energy + Delta-G solvation = -3892.250406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87457 -39.34771 -38.40067 -37.52263 -35.48368 -33.83029 -32.13284 -31.24924 -30.89881 -29.32899 -27.57214 -26.86243 -25.18313 -23.90353 -22.77632 -21.59398 -20.23860 -19.68170 -19.09131 -18.79405 -17.84516 -17.58467 -16.77356 -15.98726 -15.93597 -15.53474 -14.74276 -14.70546 -14.46407 -14.38341 -13.98717 -13.83805 -13.66476 -13.54150 -13.50878 -12.93867 -12.88579 -12.62407 -12.20982 -11.96914 -11.64263 -11.56426 -11.47819 -11.36453 -11.07822 -10.93776 -10.91712 -10.76117 -10.33940 -10.29196 -10.22282 -10.20416 -9.48739 -9.27499 -8.79728 -8.47928 -7.98820 -7.87943 -6.41758 -3.82315 0.18354 1.03541 1.39555 1.40793 2.67359 2.96045 3.16400 3.27120 3.34340 3.90435 3.94837 4.09034 4.23649 4.39099 4.56651 4.61483 4.89297 4.98586 5.09574 5.11360 5.19090 5.22301 5.29910 5.38561 5.56279 5.62977 5.69145 5.75005 5.78433 5.87643 5.89208 5.91200 5.98060 6.09826 6.18652 6.28554 6.56659 7.17221 7.26622 7.35196 7.55762 7.84107 8.06847 8.62039 9.18587 9.54659 10.06528 10.76081 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.002002 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.156704 B =13982.735211 C =14700.657319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.445 3.555 5 O -0.577 6.577 6 N -0.565 5.565 7 C -0.297 4.297 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.131 4.131 18 C 0.118 3.882 19 N -0.599 5.599 20 C 0.603 3.397 21 O -0.532 6.532 22 C 0.054 3.946 23 C -0.133 4.133 24 C -0.283 4.283 25 S 0.462 5.538 26 N -0.512 5.512 27 C 0.118 3.882 28 H 0.016 0.984 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.172 0.828 40 H 0.187 0.813 41 H 0.079 0.921 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 -20.582 16.721 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.230 3.770 5 O -0.461 6.461 6 N -0.202 5.202 7 C -0.427 4.427 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.169 4.169 18 C -0.006 4.006 19 N -0.332 5.332 20 C 0.387 3.613 21 O -0.408 6.408 22 C -0.121 4.121 23 C -0.166 4.166 24 C -0.432 4.432 25 S 0.617 5.383 26 N -0.346 5.346 27 C -0.005 4.005 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.225 0.775 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.189 0.811 40 H 0.204 0.796 41 H 0.098 0.902 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.507 -20.181 15.664 26.925 hybrid contribution -1.731 0.303 0.396 1.801 sum 6.776 -19.877 16.060 26.437 Atomic orbital electron populations 1.22600 0.86332 1.01467 1.02480 1.61614 1.08839 1.12983 1.39655 1.21882 1.00876 0.88522 0.97265 1.19704 0.85461 0.82938 0.88883 1.90488 1.43816 1.64640 1.47108 1.41866 1.49482 1.10729 1.18082 1.19746 1.32798 0.95390 0.94723 0.87844 1.25262 0.96869 0.96677 0.99228 1.69621 1.38177 1.12168 1.34395 0.85804 0.78195 0.79018 0.81356 1.19216 1.20815 1.20769 1.22768 0.95079 0.93134 0.93099 0.92682 1.22837 0.95181 0.96616 1.02285 1.22186 0.86130 0.91202 1.01045 1.48308 1.14786 1.18325 1.51777 1.16823 0.85955 0.79938 0.78613 1.90821 1.25922 1.62610 1.61478 1.21100 0.92104 0.95052 1.03818 1.21404 1.00951 0.95634 0.98617 1.27204 0.99788 1.08231 1.07964 1.80639 1.17732 1.01755 1.38188 1.72562 1.08313 1.32141 1.21633 1.22263 0.91309 0.89900 0.96992 0.96500 0.88209 0.92038 0.93395 0.89200 0.77522 0.91956 0.88969 0.89833 0.90532 0.90720 0.81054 0.79597 0.90247 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.05 60.07 0.54 0.85 16 2 N -0.51 -8.22 4.40 -233.76 -1.03 -9.25 16 3 C 0.05 0.79 5.33 -4.98 -0.03 0.77 16 4 C 0.44 10.30 7.52 -10.98 -0.08 10.21 16 5 O -0.58 -15.27 13.88 5.55 0.08 -15.20 16 6 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 10 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 11 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.07 0.89 2.71 -65.57 -0.18 0.71 16 16 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.13 -1.47 5.33 -24.90 -0.13 -1.60 16 18 C 0.12 1.26 5.47 -2.81 -0.02 1.25 16 19 N -0.60 -7.59 3.34 -171.31 -0.57 -8.16 16 20 C 0.60 8.12 7.84 -12.40 -0.10 8.03 16 21 O -0.53 -8.52 16.91 5.30 0.09 -8.43 16 22 C 0.05 0.58 6.61 -84.06 -0.56 0.03 16 23 C -0.13 -1.14 9.98 -40.27 -0.40 -1.54 16 24 C -0.28 -1.60 11.41 29.58 0.34 -1.26 16 25 S 0.46 2.74 23.20 -107.50 -2.49 0.25 16 26 N -0.51 -4.88 8.21 24.84 0.20 -4.68 16 27 C 0.12 1.54 5.33 -2.53 -0.01 1.53 16 28 H 0.02 0.25 8.13 -51.93 -0.42 -0.17 16 29 H 0.10 1.95 5.91 -51.93 -0.31 1.64 16 30 H 0.06 0.87 6.87 -51.93 -0.36 0.52 16 31 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 32 H 0.09 1.39 6.75 -51.93 -0.35 1.04 16 33 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.08 0.81 7.63 -51.93 -0.40 0.41 16 38 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 39 H 0.17 1.37 7.99 -52.49 -0.42 0.95 16 40 H 0.19 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.08 1.05 7.78 -51.93 -0.40 0.65 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -33.06 361.30 -8.90 -41.96 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.40 Total: 8.84 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -0.86 Total: 11.08 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.73 Total: -59.91 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.17 Total: -23.63 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.49 Total: 0.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.06 -8.90 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190846174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.443 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds