Wall clock time and date at job start Tue Mar 31 2020 20:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00109 * 2 1 4 4 C 1.50703 * 109.47254 * 293.95251 * 3 2 1 5 5 O 1.21293 * 119.99482 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99729 * 180.27555 * 6 4 3 8 8 H 1.08002 * 120.00496 * 359.72414 * 7 6 4 9 9 C 1.38958 * 120.00096 * 179.72242 * 7 6 4 10 10 N 1.31414 * 119.99347 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47274 * 89.99972 * 11 9 7 13 13 H 1.48505 * 109.46713 * 210.00050 * 11 9 7 14 14 H 1.48502 * 109.46813 * 329.99470 * 11 9 7 15 15 C 1.46903 * 110.99672 * 123.95011 * 2 1 3 16 16 H 1.08997 * 110.88925 * 298.46891 * 15 2 1 17 17 C 1.55152 * 111.00345 * 62.39749 * 15 2 1 18 18 C 1.54327 * 102.94434 * 153.57491 * 17 15 2 19 19 N 1.47028 * 107.26717 * 337.80310 * 18 17 15 20 20 C 1.34777 * 125.64440 * 178.90339 * 19 18 17 21 21 O 1.21620 * 119.99729 * 180.02562 * 20 19 18 22 22 C 1.47251 * 120.00211 * 0.04663 * 20 19 18 23 23 N 1.30565 * 125.54335 * 359.68865 * 22 20 19 24 24 C 1.30699 * 115.90473 * 179.81675 * 23 22 20 25 25 C 1.34232 * 115.78498 * 0.48616 * 24 23 22 26 26 S 1.71059 * 109.09182 * 359.73842 * 25 24 23 27 27 C 1.47420 * 108.70231 * 358.94420 * 19 18 17 28 28 H 1.08995 * 109.47123 * 59.99865 * 1 2 3 29 29 H 1.08995 * 109.47210 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46831 * 300.00580 * 1 2 3 31 31 H 1.08998 * 109.47322 * 173.95253 * 3 2 1 32 32 H 1.09002 * 109.47668 * 53.95450 * 3 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 34 34 H 0.97004 * 119.99790 * 179.97438 * 10 9 7 35 35 H 1.09004 * 110.72087 * 271.93659 * 17 15 2 36 36 H 1.09003 * 110.72119 * 35.20995 * 17 15 2 37 37 H 1.08997 * 109.88297 * 218.39209 * 18 17 15 38 38 H 1.08996 * 110.01399 * 97.29586 * 18 17 15 39 39 H 1.08000 * 122.10574 * 180.21915 * 24 23 22 40 40 H 1.08001 * 125.45059 * 179.74319 * 25 24 23 41 41 H 1.09002 * 110.36387 * 265.28262 * 27 19 18 42 42 H 1.09001 * 110.36832 * 142.96402 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0190 3.3198 -1.5238 7 6 1.6880 3.9363 -2.7027 8 1 1.1250 3.4007 -3.4527 9 6 2.0768 5.2504 -2.9327 10 7 2.7614 5.9023 -2.0198 11 14 1.6252 6.0906 -4.5387 12 1 0.3114 6.7669 -4.3912 13 1 2.6637 7.0956 -4.8806 14 1 1.5417 5.0773 -5.6210 15 6 1.9954 -0.7659 1.1377 16 1 1.6815 -0.3231 2.0829 17 6 1.5681 -2.2549 1.0510 18 6 2.6861 -2.9812 1.8284 19 7 3.8634 -2.1006 1.8244 20 6 5.0439 -2.3648 2.4186 21 8 5.9527 -1.5594 2.3505 22 6 5.2335 -3.6288 3.1499 23 7 4.3339 -4.5638 3.2954 24 6 4.7065 -5.6131 3.9798 25 6 5.9628 -5.5864 4.4518 26 16 6.7080 -4.1217 3.9769 27 6 3.5385 -0.8804 1.0636 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 3.0797 1.3444 0.1083 32 1 1.5612 1.9274 0.8309 33 1 2.5243 3.8010 -0.8500 34 1 3.0332 6.8195 -2.1804 35 1 0.6020 -2.4076 1.5322 36 1 1.5404 -2.5885 0.0136 37 1 2.9268 -3.9241 1.3373 38 1 2.3666 -3.1684 2.8535 39 1 4.0438 -6.4470 4.1581 40 1 6.4285 -6.3651 5.0376 41 1 3.8621 -0.9819 0.0277 42 1 4.0059 -0.0102 1.5244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192999071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:29 Heat of formation + Delta-G solvation = 4.650932 kcal Electronic energy + Delta-G solvation = -26367.231799 eV Core-core repulsion = 22475.162131 eV Total energy + Delta-G solvation = -3892.069668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.68547 -39.62017 -38.65477 -37.63909 -35.47755 -33.80895 -31.63282 -31.22546 -30.57822 -28.95607 -27.83018 -26.72933 -24.91364 -24.06074 -22.97200 -21.65095 -20.31817 -19.82924 -19.08637 -18.36438 -17.81595 -17.21403 -16.79381 -16.01223 -15.85991 -15.60153 -15.00900 -14.64141 -14.59020 -14.54991 -14.09954 -13.87953 -13.72883 -13.60359 -13.33603 -12.99900 -12.93953 -12.58881 -12.11208 -11.95633 -11.74502 -11.50339 -11.37352 -11.25348 -11.03657 -10.92549 -10.78171 -10.65704 -10.37070 -10.19411 -10.14080 -10.11245 -9.45654 -9.38810 -8.82165 -8.46759 -7.97103 -7.87359 -6.39231 -3.79977 -0.16120 0.71490 1.28671 1.98334 2.70698 2.88623 3.19547 3.28256 3.34141 3.63783 3.91858 3.97894 4.23947 4.31663 4.57300 4.63394 4.65343 4.89914 4.97259 5.10438 5.19798 5.23106 5.30299 5.49326 5.60110 5.63437 5.71597 5.73977 5.81765 5.89761 5.92191 5.94096 6.06115 6.13466 6.30153 6.55020 7.02693 7.15443 7.23250 7.35224 7.57603 7.76901 8.08598 8.64127 9.20468 9.56916 10.08565 10.78480 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.002135 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.295496 B =13112.295080 C =14052.209782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.041 3.959 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.068 3.932 16 H 0.056 0.944 17 C -0.125 4.125 18 C 0.114 3.886 19 N -0.591 5.591 20 C 0.608 3.392 21 O -0.527 6.527 22 C -0.013 4.013 23 N -0.422 5.422 24 C 0.027 3.973 25 C -0.283 4.283 26 S 0.252 5.748 27 C 0.113 3.887 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.178 0.822 40 H 0.184 0.816 41 H 0.089 0.911 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 -22.134 16.270 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.090 4.090 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.074 0.926 17 C -0.164 4.164 18 C -0.009 4.009 19 N -0.324 5.324 20 C 0.393 3.607 21 O -0.403 6.403 22 C -0.288 4.288 23 N -0.140 5.140 24 C -0.130 4.130 25 C -0.424 4.424 26 S 0.507 5.493 27 C -0.010 4.010 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.195 0.805 40 H 0.201 0.799 41 H 0.108 0.892 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.888 -21.582 15.151 26.818 hybrid contribution -0.751 0.213 0.745 1.079 sum 4.137 -21.368 15.896 26.952 Atomic orbital electron populations 1.22546 0.86100 1.01642 1.02148 1.61627 1.08964 1.12858 1.39602 1.21948 1.00858 0.88801 0.97409 1.19673 0.85476 0.82966 0.88858 1.90480 1.44007 1.64626 1.47079 1.41865 1.49267 1.10746 1.18162 1.19689 1.32891 0.95272 0.94918 0.87897 1.25270 0.96842 0.96687 0.99214 1.69617 1.38047 1.12153 1.34439 0.85858 0.77985 0.78904 0.81543 1.20472 1.20948 1.19407 1.22785 0.93592 0.94581 0.93168 0.92597 1.22778 0.97708 0.93749 1.02117 1.22148 0.84069 0.93398 1.01282 1.48079 1.12031 1.20926 1.51370 1.16280 0.82042 0.83637 0.78790 1.90896 1.40629 1.47332 1.61486 1.27625 0.94362 0.99964 1.06852 1.66979 1.31829 1.00674 1.14522 1.21773 0.94993 0.97858 0.98399 1.26949 1.00636 1.05169 1.09634 1.84155 1.14582 1.08390 1.42204 1.22400 0.94787 0.86587 0.97189 0.88279 0.91962 0.96634 0.89272 0.93278 0.77474 0.91882 0.89989 0.89022 0.90430 0.90564 0.80484 0.79860 0.89247 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.05 60.07 0.54 0.90 16 2 N -0.51 -8.07 4.40 -233.75 -1.03 -9.10 16 3 C 0.04 0.73 5.32 -4.98 -0.03 0.70 16 4 C 0.44 10.39 7.51 -10.98 -0.08 10.31 16 5 O -0.58 -15.27 13.89 5.55 0.08 -15.19 16 6 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 10 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 11 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.07 0.86 2.71 -65.57 -0.18 0.68 16 16 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 17 C -0.13 -1.28 5.37 -24.90 -0.13 -1.42 16 18 C 0.11 1.16 5.52 -3.06 -0.02 1.14 16 19 N -0.59 -7.42 3.33 -171.85 -0.57 -8.00 16 20 C 0.61 8.26 7.84 -12.60 -0.10 8.16 16 21 O -0.53 -8.61 17.20 5.26 0.09 -8.52 16 22 C -0.01 -0.15 7.33 -14.43 -0.11 -0.25 16 23 N -0.42 -4.11 8.00 -11.51 -0.09 -4.20 16 24 C 0.03 0.19 11.24 -19.45 -0.22 -0.03 16 25 C -0.28 -1.66 11.09 29.32 0.33 -1.34 16 26 S 0.25 2.05 23.03 -107.50 -2.48 -0.43 16 27 C 0.11 1.50 5.32 -2.53 -0.01 1.49 16 28 H 0.10 1.88 5.88 -51.93 -0.31 1.57 16 29 H 0.06 0.80 7.02 -51.93 -0.36 0.44 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 1.46 6.68 -51.93 -0.35 1.12 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 33 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.08 0.70 8.01 -51.93 -0.42 0.29 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 38 H 0.08 0.73 7.61 -51.93 -0.40 0.34 16 39 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.18 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -32.98 363.30 -8.55 -41.52 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.42 Total: 8.23 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -0.25 Total: 12.38 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -1.03 Total: -59.60 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.17 Total: -23.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.48 Total: -0.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.98 -8.55 -41.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192999071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds