Wall clock time and date at job start Tue Mar 31 2020 20:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00109 * 2 1 4 4 C 1.50703 * 109.47254 * 293.95251 * 3 2 1 5 5 O 1.21293 * 119.99482 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99729 * 180.27555 * 6 4 3 8 8 H 1.08002 * 120.00496 * 359.72414 * 7 6 4 9 9 C 1.38958 * 120.00096 * 179.72242 * 7 6 4 10 10 N 1.31414 * 119.99347 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00310 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47274 * 89.99972 * 11 9 7 13 13 H 1.48505 * 109.46713 * 210.00050 * 11 9 7 14 14 H 1.48502 * 109.46813 * 329.99470 * 11 9 7 15 15 C 1.46903 * 110.99672 * 123.95011 * 2 1 3 16 16 H 1.08997 * 110.88925 * 298.46891 * 15 2 1 17 17 C 1.55152 * 111.00345 * 62.39749 * 15 2 1 18 18 C 1.54327 * 102.94434 * 153.57491 * 17 15 2 19 19 N 1.47028 * 107.26717 * 337.80310 * 18 17 15 20 20 C 1.34777 * 125.64440 * 178.90339 * 19 18 17 21 21 O 1.21620 * 119.99729 * 180.02562 * 20 19 18 22 22 C 1.47251 * 120.00211 * 0.04663 * 20 19 18 23 23 N 1.30565 * 125.54335 * 359.68865 * 22 20 19 24 24 C 1.30699 * 115.90473 * 179.81675 * 23 22 20 25 25 C 1.34232 * 115.78498 * 0.48616 * 24 23 22 26 26 S 1.71059 * 109.09182 * 359.73842 * 25 24 23 27 27 C 1.47420 * 108.70231 * 358.94420 * 19 18 17 28 28 H 1.08995 * 109.47123 * 59.99865 * 1 2 3 29 29 H 1.08995 * 109.47210 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46831 * 300.00580 * 1 2 3 31 31 H 1.08998 * 109.47322 * 173.95253 * 3 2 1 32 32 H 1.09002 * 109.47668 * 53.95450 * 3 2 1 33 33 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 34 34 H 0.97004 * 119.99790 * 179.97438 * 10 9 7 35 35 H 1.09004 * 110.72087 * 271.93659 * 17 15 2 36 36 H 1.09003 * 110.72119 * 35.20995 * 17 15 2 37 37 H 1.08997 * 109.88297 * 218.39209 * 18 17 15 38 38 H 1.08996 * 110.01399 * 97.29586 * 18 17 15 39 39 H 1.08000 * 122.10574 * 180.21915 * 24 23 22 40 40 H 1.08001 * 125.45059 * 179.74319 * 25 24 23 41 41 H 1.09002 * 110.36387 * 265.28262 * 27 19 18 42 42 H 1.09001 * 110.36832 * 142.96402 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0190 3.3198 -1.5238 7 6 1.6880 3.9363 -2.7027 8 1 1.1250 3.4007 -3.4527 9 6 2.0768 5.2504 -2.9327 10 7 2.7614 5.9023 -2.0198 11 14 1.6252 6.0906 -4.5387 12 1 0.3114 6.7669 -4.3912 13 1 2.6637 7.0956 -4.8806 14 1 1.5417 5.0773 -5.6210 15 6 1.9954 -0.7659 1.1377 16 1 1.6815 -0.3231 2.0829 17 6 1.5681 -2.2549 1.0510 18 6 2.6861 -2.9812 1.8284 19 7 3.8634 -2.1006 1.8244 20 6 5.0439 -2.3648 2.4186 21 8 5.9527 -1.5594 2.3505 22 6 5.2335 -3.6288 3.1499 23 7 4.3339 -4.5638 3.2954 24 6 4.7065 -5.6131 3.9798 25 6 5.9628 -5.5864 4.4518 26 16 6.7080 -4.1217 3.9769 27 6 3.5385 -0.8804 1.0636 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 3.0797 1.3444 0.1083 32 1 1.5612 1.9274 0.8309 33 1 2.5243 3.8010 -0.8500 34 1 3.0332 6.8195 -2.1804 35 1 0.6020 -2.4076 1.5322 36 1 1.5404 -2.5885 0.0136 37 1 2.9268 -3.9241 1.3373 38 1 2.3666 -3.1684 2.8535 39 1 4.0438 -6.4470 4.1581 40 1 6.4285 -6.3651 5.0376 41 1 3.8621 -0.9819 0.0277 42 1 4.0059 -0.0102 1.5244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192999071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:29 Heat of formation + Delta-G solvation = -20.248515 kcal Electronic energy + Delta-G solvation = -26368.311520 eV Core-core repulsion = 22475.162131 eV Total energy + Delta-G solvation = -3893.149389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56730 -40.56352 -40.06393 -38.96456 -36.78403 -35.77469 -33.27376 -32.50105 -31.40470 -29.92704 -29.30653 -27.48761 -26.70787 -25.20313 -24.09038 -22.39011 -21.46034 -20.93090 -20.51895 -19.83188 -19.10744 -18.15563 -17.86628 -17.46054 -16.88769 -16.60837 -16.47361 -16.11652 -15.88597 -15.61696 -15.41455 -15.10268 -14.95641 -14.62268 -14.39629 -14.17924 -13.95311 -13.82479 -13.59572 -13.39020 -13.08198 -12.80165 -12.61610 -12.48584 -12.40664 -12.32468 -12.12362 -11.93225 -11.84932 -11.64596 -11.44299 -10.86915 -10.70955 -10.27410 -10.08219 -9.98985 -9.74238 -9.25472 -8.45129 -5.93672 -0.82591 0.06776 0.72461 1.27858 1.38475 1.41915 1.54942 1.78768 2.06523 2.07079 2.29089 2.71498 2.95483 3.21485 3.32135 3.49323 3.64535 3.91468 4.03961 4.16902 4.29317 4.30740 4.31989 4.39611 4.40955 4.49973 4.59470 4.60914 4.73161 4.82248 4.88927 4.94022 5.05949 5.16130 5.20382 5.29385 5.42584 5.85005 6.04622 6.17490 6.23598 6.41699 6.61785 6.81977 7.14350 7.57879 8.13389 8.72391 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.002135 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.295496 B =13112.295080 C =14052.209782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.523 5.523 3 C 0.054 3.946 4 C 0.444 3.556 5 O -0.611 6.611 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.922 5.922 11 Si 0.994 3.006 12 H -0.270 1.270 13 H -0.272 1.272 14 H -0.273 1.273 15 C 0.075 3.925 16 H 0.070 0.930 17 C -0.116 4.116 18 C 0.121 3.879 19 N -0.593 5.593 20 C 0.603 3.397 21 O -0.570 6.570 22 C -0.058 4.058 23 N -0.424 5.424 24 C 0.011 3.989 25 C -0.251 4.251 26 S 0.258 5.742 27 C 0.113 3.887 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.395 0.605 34 H 0.277 0.723 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.222 0.778 41 H 0.070 0.930 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 -24.267 18.056 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.247 5.247 3 C -0.078 4.078 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.213 5.213 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.563 5.563 11 Si 0.817 3.183 12 H -0.195 1.195 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.034 4.034 16 H 0.088 0.912 17 C -0.154 4.154 18 C -0.001 4.001 19 N -0.326 5.326 20 C 0.389 3.611 21 O -0.449 6.449 22 C -0.330 4.330 23 N -0.143 5.143 24 C -0.146 4.146 25 C -0.392 4.392 26 S 0.511 5.489 27 C -0.010 4.010 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.239 0.761 41 H 0.089 0.911 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.559 -23.733 16.955 29.521 hybrid contribution -0.613 0.698 0.278 0.970 sum 3.945 -23.035 17.234 29.037 Atomic orbital electron populations 1.22440 0.85665 1.03028 1.00792 1.61549 1.09491 1.11814 1.41882 1.21782 1.01759 0.89833 0.94376 1.20662 0.83714 0.82210 0.90289 1.90459 1.45070 1.65240 1.48877 1.41950 1.49990 1.11623 1.17782 1.19661 1.34253 0.96189 0.95830 0.90133 1.26065 0.96355 0.96725 1.02402 1.69686 1.38273 1.12562 1.35811 0.84917 0.78204 0.77761 0.77395 1.19546 1.19727 1.19732 1.22782 0.92703 0.95626 0.92334 0.91179 1.22777 0.98959 0.91577 1.02058 1.22206 0.82978 0.92976 1.01936 1.48171 1.12621 1.20877 1.50887 1.16690 0.81591 0.84276 0.78499 1.90852 1.41889 1.48980 1.63217 1.27157 0.96311 0.99934 1.09610 1.66942 1.31994 1.00945 1.14416 1.22274 0.96068 0.97933 0.98283 1.27428 0.99803 1.04306 1.07631 1.84175 1.13700 1.09592 1.41438 1.22271 0.95522 0.87019 0.96238 0.92361 0.89222 0.95107 0.88109 0.91305 0.77166 0.91385 0.87318 0.89822 0.90085 0.89403 0.77495 0.76148 0.91146 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.05 127.69 1.16 1.99 16 2 N -0.52 -16.34 4.40 -893.45 -3.93 -20.27 16 3 C 0.05 1.90 5.32 85.56 0.46 2.35 16 4 C 0.44 21.32 7.51 87.66 0.66 21.98 16 5 O -0.61 -33.45 13.89 -3.07 -0.04 -33.49 16 6 N -0.58 -30.10 5.29 -306.98 -1.62 -31.73 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 10 N -0.92 -50.81 13.05 21.67 0.28 -50.53 16 11 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.07 1.78 2.71 46.30 0.13 1.90 16 16 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 17 C -0.12 -2.12 5.37 31.78 0.17 -1.95 16 18 C 0.12 2.26 5.52 86.73 0.48 2.74 16 19 N -0.59 -14.83 3.33 -815.86 -2.71 -17.55 16 20 C 0.60 16.70 7.84 86.61 0.68 17.38 16 21 O -0.57 -19.49 17.20 -4.09 -0.07 -19.56 16 22 C -0.06 -1.24 7.33 87.25 0.64 -0.60 16 23 N -0.42 -7.44 8.00 -190.32 -1.52 -8.96 16 24 C 0.01 0.12 11.24 83.95 0.94 1.06 16 25 C -0.25 -2.04 11.09 66.90 0.74 -1.30 16 26 S 0.26 3.82 23.03 -56.49 -1.30 2.52 16 27 C 0.11 3.04 5.32 86.86 0.46 3.50 16 28 H 0.06 2.24 5.88 -2.39 -0.01 2.23 16 29 H 0.09 2.12 7.02 -2.39 -0.02 2.10 16 30 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 3.34 6.68 -2.39 -0.02 3.32 16 32 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 33 H 0.39 19.80 7.90 -92.71 -0.73 19.07 16 34 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.11 1.46 8.01 -2.39 -0.02 1.44 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.48 7.75 -2.39 -0.02 1.46 16 38 H 0.09 1.47 7.61 -2.39 -0.02 1.45 16 39 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 Total: -1.00 -74.60 363.30 -0.77 -75.37 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.33 Total: 28.02 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 7.79 Total: 30.51 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -9.51 Total: -129.03 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -0.11 Total: -53.05 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.30 Total: 2.52 kcal Total: -74.60 -0.77 -75.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192999071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.120 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds