Wall clock time and date at job start Tue Mar 31 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47081 * 2 1 4 4 C 1.34226 * 117.00180 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99766 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00449 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47529 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.46725 * 55.66298 * 7 6 4 9 9 C 1.50695 * 109.47268 * 175.66077 * 7 6 4 10 10 H 1.08004 * 120.00258 * 245.49059 * 9 7 6 11 11 C 1.37873 * 120.00224 * 65.48719 * 9 7 6 12 12 N 1.31518 * 120.00406 * 200.34558 * 11 9 7 13 13 Si 1.86806 * 119.99778 * 20.34986 * 11 9 7 14 14 H 1.48497 * 109.47107 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.46718 * 299.99738 * 13 11 9 16 16 H 1.48497 * 109.47202 * 59.99641 * 13 11 9 17 17 O 1.42903 * 109.47179 * 295.66265 * 7 6 4 18 18 C 1.35607 * 116.99759 * 156.08217 * 17 7 6 19 19 C 1.38216 * 120.11358 * 5.46682 * 18 17 7 20 20 C 1.38922 * 120.21621 * 179.74865 * 19 18 17 21 21 O 1.35675 * 119.78343 * 180.28116 * 20 19 18 22 22 C 1.38966 * 120.43761 * 0.55386 * 20 19 18 23 23 C 1.38175 * 120.21346 * 359.70817 * 22 20 19 24 24 O 1.35613 * 120.11177 * 179.97438 * 23 22 20 25 25 C 1.40742 * 120.11025 * 185.75046 * 18 17 7 26 26 C 1.46143 * 120.21199 * 359.97438 * 25 18 17 27 27 C 1.50697 * 120.00267 * 93.51744 * 26 25 18 28 28 O 1.21383 * 119.99482 * 273.51833 * 26 25 18 29 29 H 1.09002 * 109.47000 * 299.99640 * 1 2 3 30 30 H 1.09000 * 109.46867 * 60.00115 * 1 2 3 31 31 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47000 * 240.00360 * 2 1 3 33 33 H 1.08997 * 109.47307 * 120.00112 * 2 1 3 34 34 H 1.08998 * 109.46927 * 60.00226 * 6 4 3 35 35 H 1.09001 * 109.47111 * 300.00255 * 6 4 3 36 36 H 0.96996 * 119.99789 * 354.94997 * 12 11 9 37 37 H 1.08003 * 119.89277 * 0.02562 * 19 18 17 38 38 H 0.96693 * 113.99963 * 270.27027 * 21 20 19 39 39 H 1.07999 * 119.89350 * 179.71867 * 22 20 19 40 40 H 0.96705 * 114.00294 * 270.01837 * 24 23 22 41 41 H 1.09007 * 109.46915 * 4.99847 * 27 26 25 42 42 H 1.08998 * 109.47163 * 124.99665 * 27 26 25 43 43 H 1.08998 * 109.47032 * 245.00127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7811 2.2599 -0.8479 9 6 6.0244 4.2459 -0.1058 10 1 6.5859 4.5317 -0.9831 11 6 5.8344 5.1516 0.9162 12 7 5.9662 6.4398 0.6863 13 14 5.3897 4.5489 2.6275 14 1 5.2408 5.7120 3.5387 15 1 4.1097 3.7982 2.5708 16 1 6.4643 3.6576 3.1332 17 8 5.8939 2.2492 1.2151 18 6 7.1108 1.6513 1.1939 19 6 7.9099 1.7448 0.0700 20 6 9.1591 1.1375 0.0478 21 8 9.9386 1.2396 -1.0579 22 6 9.6134 0.4213 1.1487 23 6 8.8271 0.3118 2.2797 24 8 9.2722 -0.3880 3.3526 25 6 7.5620 0.9285 2.3141 26 6 6.7226 0.8188 3.5054 27 6 5.8053 -0.3647 3.6745 28 8 6.7644 1.6812 4.3586 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5845 3.4693 0.8912 35 1 3.5851 3.4699 -0.8888 36 1 6.2683 6.7491 -0.1820 37 1 7.5638 2.2955 -0.7922 38 1 9.7978 0.5349 -1.7048 39 1 10.5841 -0.0511 1.1203 40 1 9.0342 -1.3252 3.3373 41 1 5.9686 -1.0703 2.8598 42 1 6.0145 -0.8536 4.6259 43 1 4.7692 -0.0264 3.6598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225674041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:19 Heat of formation + Delta-G solvation = -218.284486 kcal Electronic energy + Delta-G solvation = -31033.716428 eV Core-core repulsion = 26624.641182 eV Total energy + Delta-G solvation = -4409.075246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45253 -40.02812 -38.49017 -38.24990 -37.51366 -36.29807 -34.79777 -33.19553 -31.89195 -31.13040 -30.64515 -29.02839 -28.50468 -26.31033 -23.30239 -23.18643 -22.70557 -21.39026 -20.38106 -19.75797 -19.16301 -17.75061 -17.30635 -17.00967 -16.68237 -16.44461 -16.39814 -15.97320 -15.81079 -15.17295 -14.69772 -14.35235 -14.22681 -14.12984 -14.02107 -13.81674 -13.28409 -13.17936 -12.83484 -12.79855 -12.52304 -12.35047 -12.21706 -11.93950 -11.80259 -11.63694 -11.52770 -11.39036 -10.90438 -10.65900 -10.60477 -10.43296 -10.39080 -10.33464 -9.95884 -9.39184 -9.34495 -9.09078 -8.48021 -8.27030 -7.67863 -6.73995 -4.53961 1.28054 1.70292 2.31816 2.62910 2.97389 3.34622 3.48614 3.66271 3.81896 4.04785 4.31347 4.39271 4.44508 4.61691 4.89130 4.92689 5.02746 5.12268 5.23311 5.30606 5.34358 5.48663 5.62016 5.62969 5.69274 5.70986 5.74374 5.84042 5.87689 5.93226 5.93982 6.09563 6.28739 6.42029 6.45956 6.56961 6.68117 6.74446 6.92367 7.43658 7.64492 7.80487 7.87317 8.00651 8.13142 8.15022 8.60184 9.26383 10.62053 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.005531 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.729032 B = 5061.216228 C = 5863.923654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.457 3.543 5 O -0.508 6.508 6 C -0.110 4.110 7 C 0.194 3.806 8 H 0.052 0.948 9 C -0.639 4.639 10 H 0.072 0.928 11 C 0.054 3.946 12 N -0.870 5.870 13 Si 1.046 2.954 14 H -0.299 1.299 15 H -0.282 1.282 16 H -0.253 1.253 17 O -0.313 6.313 18 C 0.242 3.758 19 C -0.224 4.224 20 C 0.166 3.834 21 O -0.495 6.495 22 C -0.226 4.226 23 C 0.179 3.821 24 O -0.490 6.490 25 C -0.243 4.243 26 C 0.420 3.580 27 C -0.192 4.192 28 O -0.440 6.440 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.151 0.849 38 H 0.389 0.611 39 H 0.132 0.868 40 H 0.389 0.611 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 -17.266 -2.028 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.301 3.699 5 O -0.396 6.396 6 C -0.148 4.148 7 C 0.141 3.859 8 H 0.070 0.930 9 C -0.675 4.675 10 H 0.090 0.910 11 C -0.157 4.157 12 N -0.501 5.501 13 Si 0.875 3.125 14 H -0.227 1.227 15 H -0.210 1.210 16 H -0.178 1.178 17 O -0.226 6.226 18 C 0.193 3.807 19 C -0.243 4.243 20 C 0.121 3.879 21 O -0.305 6.305 22 C -0.245 4.245 23 C 0.133 3.867 24 O -0.300 6.300 25 C -0.245 4.245 26 C 0.294 3.706 27 C -0.249 4.249 28 O -0.312 6.312 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.245 0.755 39 H 0.150 0.850 40 H 0.245 0.755 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.923 -15.509 0.514 16.005 hybrid contribution 0.179 -1.420 -2.316 2.722 sum -3.744 -16.928 -1.801 17.431 Atomic orbital electron populations 1.21793 0.93055 1.02542 1.03480 1.22917 0.95070 0.81275 1.02196 1.86574 1.25644 1.31507 1.84471 1.24591 0.79853 0.93856 0.71574 1.90599 1.60225 1.43281 1.45464 1.22238 0.96342 0.89269 1.06921 1.20386 0.88735 0.94160 0.82664 0.93041 1.22151 1.41570 0.95928 1.07837 0.91018 1.25949 0.92676 0.93200 1.03869 1.70912 1.37716 1.14327 1.27122 0.84018 0.78598 0.75075 0.74779 1.22740 1.20984 1.17764 1.85886 1.29951 1.65846 1.40909 1.18191 0.85534 0.86475 0.90503 1.21578 0.94812 1.06689 1.01229 1.18069 0.88522 0.94287 0.87035 1.84759 1.62339 1.53320 1.30118 1.21168 1.02213 1.07316 0.93833 1.17597 0.89254 0.93964 0.85841 1.84781 1.78316 1.25152 1.41771 1.19974 0.97624 1.09595 0.97316 1.21826 0.79411 0.85691 0.83645 1.22182 1.01019 0.98090 1.03617 1.90590 1.60522 1.38969 1.41088 0.91518 0.91588 0.90629 0.91633 0.91570 0.86939 0.86227 0.91650 0.83188 0.75493 0.84968 0.75540 0.90279 0.89401 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.82 10.22 -39.25 -0.40 -6.23 16 4 C 0.46 8.39 7.83 36.00 0.28 8.67 16 5 O -0.51 -9.94 15.15 -24.22 -0.37 -10.31 16 6 C -0.11 -2.19 5.23 -27.89 -0.15 -2.34 16 7 C 0.19 4.32 1.33 -27.89 -0.04 4.29 16 8 H 0.05 1.10 6.21 -51.93 -0.32 0.78 16 9 C -0.64 -16.54 8.28 -34.44 -0.29 -16.82 16 10 H 0.07 1.97 8.06 -52.48 -0.42 1.54 16 11 C 0.05 1.51 5.32 -17.82 -0.09 1.41 16 12 N -0.87 -25.53 13.70 55.43 0.76 -24.77 16 13 Si 1.05 26.99 24.84 -169.99 -4.22 22.76 16 14 H -0.30 -7.96 7.11 56.52 0.40 -7.55 16 15 H -0.28 -6.69 5.66 56.52 0.32 -6.37 16 16 H -0.25 -6.78 5.26 56.52 0.30 -6.48 16 17 O -0.31 -7.13 4.65 -33.60 -0.16 -7.28 16 18 C 0.24 5.18 6.52 -38.64 -0.25 4.93 16 19 C -0.22 -4.46 8.60 -39.34 -0.34 -4.80 16 20 C 0.17 2.84 6.70 -39.06 -0.26 2.58 16 21 O -0.50 -7.31 13.48 -18.73 -0.25 -7.57 16 22 C -0.23 -3.60 9.89 -39.33 -0.39 -3.99 16 23 C 0.18 3.00 6.72 -38.64 -0.26 2.74 16 24 O -0.49 -6.88 12.95 -18.54 -0.24 -7.12 16 25 C -0.24 -4.76 5.47 -104.82 -0.57 -5.33 16 26 C 0.42 8.10 5.72 -31.14 -0.18 7.92 16 27 C -0.19 -2.67 10.31 36.00 0.37 -2.30 16 28 O -0.44 -10.07 16.32 5.47 0.09 -9.98 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 34 H 0.11 2.37 5.06 -51.93 -0.26 2.10 16 35 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 36 H 0.27 7.83 8.73 -40.82 -0.36 7.48 16 37 H 0.15 3.09 5.64 -52.48 -0.30 2.80 16 38 H 0.39 3.48 9.06 45.56 0.41 3.89 16 39 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.39 3.12 9.06 45.56 0.41 3.54 16 41 H 0.08 0.95 7.99 -51.93 -0.41 0.54 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -35.23 366.71 -4.85 -40.08 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.04 Total: 7.94 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.55 Total: -3.06 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.76 Total: -24.77 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.33 Total: -48.49 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -4.22 Total: 22.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.23 -4.85 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225674041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.200 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds