Wall clock time and date at job start Tue Mar 31 2020 20:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47081 * 2 1 4 4 C 1.34226 * 117.00180 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99766 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00449 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47529 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.46725 * 55.66298 * 7 6 4 9 9 C 1.50695 * 109.47268 * 175.66077 * 7 6 4 10 10 H 1.08004 * 120.00258 * 245.49059 * 9 7 6 11 11 C 1.37873 * 120.00224 * 65.48719 * 9 7 6 12 12 N 1.31518 * 120.00406 * 200.34558 * 11 9 7 13 13 Si 1.86806 * 119.99778 * 20.34986 * 11 9 7 14 14 H 1.48497 * 109.47107 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.46718 * 299.99738 * 13 11 9 16 16 H 1.48497 * 109.47202 * 59.99641 * 13 11 9 17 17 O 1.42903 * 109.47179 * 295.66265 * 7 6 4 18 18 C 1.35607 * 116.99759 * 156.08217 * 17 7 6 19 19 C 1.38216 * 120.11358 * 5.46682 * 18 17 7 20 20 C 1.38922 * 120.21621 * 179.74865 * 19 18 17 21 21 O 1.35675 * 119.78343 * 180.28116 * 20 19 18 22 22 C 1.38966 * 120.43761 * 0.55386 * 20 19 18 23 23 C 1.38175 * 120.21346 * 359.70817 * 22 20 19 24 24 O 1.35613 * 120.11177 * 179.97438 * 23 22 20 25 25 C 1.40742 * 120.11025 * 185.75046 * 18 17 7 26 26 C 1.46143 * 120.21199 * 359.97438 * 25 18 17 27 27 C 1.50697 * 120.00267 * 93.51744 * 26 25 18 28 28 O 1.21383 * 119.99482 * 273.51833 * 26 25 18 29 29 H 1.09002 * 109.47000 * 299.99640 * 1 2 3 30 30 H 1.09000 * 109.46867 * 60.00115 * 1 2 3 31 31 H 1.08996 * 109.46825 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47000 * 240.00360 * 2 1 3 33 33 H 1.08997 * 109.47307 * 120.00112 * 2 1 3 34 34 H 1.08998 * 109.46927 * 60.00226 * 6 4 3 35 35 H 1.09001 * 109.47111 * 300.00255 * 6 4 3 36 36 H 0.96996 * 119.99789 * 354.94997 * 12 11 9 37 37 H 1.08003 * 119.89277 * 0.02562 * 19 18 17 38 38 H 0.96693 * 113.99963 * 270.27027 * 21 20 19 39 39 H 1.07999 * 119.89350 * 179.71867 * 22 20 19 40 40 H 0.96705 * 114.00294 * 270.01837 * 24 23 22 41 41 H 1.09007 * 109.46915 * 4.99847 * 27 26 25 42 42 H 1.08998 * 109.47163 * 124.99665 * 27 26 25 43 43 H 1.08998 * 109.47032 * 245.00127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 1 5.7811 2.2599 -0.8479 9 6 6.0244 4.2459 -0.1058 10 1 6.5859 4.5317 -0.9831 11 6 5.8344 5.1516 0.9162 12 7 5.9662 6.4398 0.6863 13 14 5.3897 4.5489 2.6275 14 1 5.2408 5.7120 3.5387 15 1 4.1097 3.7982 2.5708 16 1 6.4643 3.6576 3.1332 17 8 5.8939 2.2492 1.2151 18 6 7.1108 1.6513 1.1939 19 6 7.9099 1.7448 0.0700 20 6 9.1591 1.1375 0.0478 21 8 9.9386 1.2396 -1.0579 22 6 9.6134 0.4213 1.1487 23 6 8.8271 0.3118 2.2797 24 8 9.2722 -0.3880 3.3526 25 6 7.5620 0.9285 2.3141 26 6 6.7226 0.8188 3.5054 27 6 5.8053 -0.3647 3.6745 28 8 6.7644 1.6812 4.3586 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5845 3.4693 0.8912 35 1 3.5851 3.4699 -0.8888 36 1 6.2683 6.7491 -0.1820 37 1 7.5638 2.2955 -0.7922 38 1 9.7978 0.5349 -1.7048 39 1 10.5841 -0.0511 1.1203 40 1 9.0342 -1.3252 3.3373 41 1 5.9686 -1.0703 2.8598 42 1 6.0145 -0.8536 4.6259 43 1 4.7692 -0.0264 3.6598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225674041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:18 Heat of formation + Delta-G solvation = -245.691470 kcal Electronic energy + Delta-G solvation = -31034.904884 eV Core-core repulsion = 26624.641182 eV Total energy + Delta-G solvation = -4410.263702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90711 -41.39250 -39.98484 -39.68211 -38.75957 -37.62370 -36.23326 -35.08833 -33.26653 -32.42381 -31.99566 -30.43716 -29.76725 -28.08095 -24.70808 -24.54817 -23.98179 -22.86423 -21.87045 -21.16185 -20.64499 -19.53017 -18.72646 -18.30463 -18.10001 -17.88762 -17.73177 -17.38592 -17.20926 -16.57042 -16.17557 -15.92318 -15.54100 -15.44840 -15.35205 -15.25520 -15.05045 -14.70395 -14.32303 -14.07717 -13.73754 -13.65200 -13.46839 -13.23421 -13.16669 -12.93431 -12.84459 -12.52573 -12.45303 -12.43462 -12.10006 -12.04121 -11.76720 -11.49730 -11.48136 -11.23711 -11.16671 -10.74172 -10.59674 -9.64573 -9.23333 -8.86906 -6.68037 -0.08404 0.31391 0.87931 1.18198 1.31726 1.46873 1.69184 1.78248 2.24863 2.31583 2.43632 2.90586 3.02950 3.15562 3.39148 3.78088 4.02930 4.04878 4.08891 4.12377 4.13817 4.15872 4.23811 4.28886 4.37072 4.54958 4.58075 4.62871 4.70453 4.82130 4.90423 4.94145 4.98806 5.13649 5.15245 5.24436 5.28097 5.42252 5.49378 5.55858 5.85788 6.23868 6.46077 6.58137 6.71258 6.76393 6.81451 7.16002 8.44979 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.008876 B = 0.005531 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.729032 B = 5061.216228 C = 5863.923654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.366 6.366 4 C 0.467 3.533 5 O -0.521 6.521 6 C -0.112 4.112 7 C 0.201 3.799 8 H 0.056 0.944 9 C -0.626 4.626 10 H 0.047 0.953 11 C 0.023 3.977 12 N -0.909 5.909 13 Si 1.073 2.927 14 H -0.315 1.315 15 H -0.253 1.253 16 H -0.267 1.267 17 O -0.323 6.323 18 C 0.210 3.790 19 C -0.249 4.249 20 C 0.178 3.822 21 O -0.500 6.500 22 C -0.216 4.216 23 C 0.194 3.806 24 O -0.492 6.492 25 C -0.267 4.267 26 C 0.415 3.585 27 C -0.183 4.183 28 O -0.489 6.489 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.266 0.734 37 H 0.132 0.868 38 H 0.416 0.584 39 H 0.165 0.835 40 H 0.418 0.582 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 -20.836 -1.900 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.283 6.283 4 C 0.311 3.689 5 O -0.410 6.410 6 C -0.149 4.149 7 C 0.147 3.853 8 H 0.074 0.926 9 C -0.663 4.663 10 H 0.065 0.935 11 C -0.183 4.183 12 N -0.542 5.542 13 Si 0.902 3.098 14 H -0.245 1.245 15 H -0.179 1.179 16 H -0.193 1.193 17 O -0.237 6.237 18 C 0.162 3.838 19 C -0.268 4.268 20 C 0.132 3.868 21 O -0.314 6.314 22 C -0.234 4.234 23 C 0.149 3.851 24 O -0.306 6.306 25 C -0.270 4.270 26 C 0.293 3.707 27 C -0.240 4.240 28 O -0.365 6.365 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.277 0.723 39 H 0.183 0.817 40 H 0.279 0.721 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.215 -19.164 0.605 19.631 hybrid contribution 0.405 -0.526 -2.433 2.522 sum -3.810 -19.690 -1.828 20.138 Atomic orbital electron populations 1.21829 0.90355 1.04454 1.03589 1.23332 0.97152 0.79219 1.02644 1.86542 1.23849 1.34067 1.83863 1.23967 0.80726 0.92706 0.71492 1.90590 1.60808 1.43416 1.46200 1.22016 0.94808 0.90903 1.07186 1.20184 0.89988 0.91960 0.83174 0.92560 1.22222 1.40120 0.97788 1.06129 0.93489 1.26530 0.92964 0.93150 1.05609 1.70966 1.40982 1.15318 1.26949 0.83627 0.79464 0.74084 0.72621 1.24476 1.17895 1.19334 1.85782 1.31058 1.66616 1.40285 1.18507 0.85430 0.87930 0.91934 1.21544 0.96435 1.08254 1.00548 1.18079 0.87411 0.93051 0.88219 1.84692 1.61490 1.55019 1.30241 1.21449 1.03074 1.06234 0.92693 1.17625 0.87981 0.93182 0.86334 1.84719 1.77910 1.27371 1.40608 1.20296 0.99243 1.10323 0.97108 1.22612 0.79222 0.86317 0.82535 1.22190 0.99329 0.96273 1.06160 1.90571 1.62144 1.41089 1.42649 0.91592 0.91308 0.87767 0.91046 0.91344 0.88042 0.84744 0.92423 0.84997 0.72300 0.81725 0.72060 0.88181 0.86316 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.11 6.19 71.98 0.45 1.55 16 3 O -0.37 -11.09 10.22 -51.38 -0.53 -11.61 16 4 C 0.47 16.64 7.83 71.24 0.56 17.20 16 5 O -0.52 -19.78 15.15 27.16 0.41 -19.37 16 6 C -0.11 -4.42 5.23 29.85 0.16 -4.27 16 7 C 0.20 9.09 1.33 29.85 0.04 9.13 16 8 H 0.06 2.46 6.21 -2.38 -0.01 2.44 16 9 C -0.63 -33.52 8.28 25.60 0.21 -33.31 16 10 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 11 C 0.02 1.32 5.32 84.65 0.45 1.77 16 12 N -0.91 -55.42 13.70 21.45 0.29 -55.13 16 13 Si 1.07 56.39 24.84 68.60 1.70 58.10 16 14 H -0.32 -17.17 7.11 99.48 0.71 -16.46 16 15 H -0.25 -11.89 5.66 99.48 0.56 -11.33 16 16 H -0.27 -14.74 5.26 99.48 0.52 -14.22 16 17 O -0.32 -14.85 4.65 -74.75 -0.35 -15.19 16 18 C 0.21 8.98 6.52 22.88 0.15 9.13 16 19 C -0.25 -9.92 8.60 22.43 0.19 -9.72 16 20 C 0.18 5.80 6.70 22.61 0.15 5.95 16 21 O -0.50 -13.65 13.48 -89.93 -1.21 -14.86 16 22 C -0.22 -6.20 9.89 22.43 0.22 -5.97 16 23 C 0.19 6.04 6.72 22.88 0.15 6.19 16 24 O -0.49 -12.05 12.95 -89.25 -1.16 -13.21 16 25 C -0.27 -10.20 5.47 -19.99 -0.11 -10.30 16 26 C 0.42 15.55 5.72 27.74 0.16 15.71 16 27 C -0.18 -4.61 10.31 71.23 0.73 -3.87 16 28 O -0.49 -22.43 16.32 -3.35 -0.05 -22.48 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.07 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.10 4.25 5.06 -2.39 -0.01 4.24 16 35 H 0.13 4.80 8.14 -2.39 -0.02 4.79 16 36 H 0.27 16.00 8.73 -92.71 -0.81 15.19 16 37 H 0.13 5.63 5.64 -2.91 -0.02 5.61 16 38 H 0.42 6.29 9.06 -74.06 -0.67 5.62 16 39 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.42 4.85 9.06 -74.05 -0.67 4.18 16 41 H 0.10 2.07 7.99 -2.38 -0.02 2.05 16 42 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -79.80 366.71 2.75 -77.05 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.62 Total: 18.98 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.25 Total: -2.27 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.29 Total: -55.13 kcal Atomic # 8 Polarization: -93.85 SS G_CDS: -2.88 Total: -96.73 kcal Atomic # 14 Polarization: 56.39 SS G_CDS: 1.70 Total: 58.10 kcal Total: -79.80 2.75 -77.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225674041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.638 kcal (2) G-P(sol) polarization free energy of solvation -79.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds